Wall clock time and date at job start Tue Mar 31 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99740 * 2 1 4 4 H 1.48502 * 109.47199 * 240.00028 * 3 2 1 5 5 H 1.48495 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47124 * 120.00402 * 3 2 1 7 7 C 1.37874 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00112 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47452 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00077 * 95.43056 * 10 9 7 12 12 C 1.50698 * 109.46978 * 90.00106 * 11 10 9 13 13 C 1.38670 * 120.41767 * 90.00454 * 12 11 10 14 14 C 1.38623 * 118.42363 * 179.97438 * 13 12 11 15 15 C 1.38229 * 119.16085 * 0.25230 * 14 13 12 16 16 N 1.31854 * 120.76090 * 359.49408 * 15 14 13 17 17 C 1.31890 * 121.72639 * 0.50038 * 16 15 14 18 18 C 1.34779 * 119.99881 * 275.43691 * 10 9 7 19 19 O 1.21497 * 119.99477 * 185.18263 * 18 10 9 20 20 C 1.48347 * 120.00122 * 5.18790 * 18 10 9 21 21 C 1.41915 * 126.83942 * 185.59636 * 20 18 10 22 22 C 1.36716 * 103.81310 * 179.97438 * 21 20 18 23 23 C 1.47853 * 126.81833 * 179.97438 * 22 21 20 24 24 C 1.39565 * 120.14134 * 359.72964 * 23 22 21 25 25 C 1.37961 * 119.85215 * 179.76301 * 24 23 22 26 26 C 1.38360 * 120.14349 * 0.50923 * 25 24 23 27 27 C 1.38350 * 120.29077 * 359.74252 * 26 25 24 28 28 C 1.37962 * 120.14365 * 359.97438 * 27 26 25 29 29 O 1.34455 * 106.36306 * 0.02562 * 22 21 20 30 30 N 1.20880 * 111.74102 * 359.70134 * 29 22 21 31 31 H 0.96992 * 120.00223 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47226 * 60.00110 * 9 7 2 33 33 H 1.08996 * 109.47410 * 300.00152 * 9 7 2 34 34 H 1.09005 * 109.47249 * 330.00464 * 11 10 9 35 35 H 1.08993 * 109.47448 * 210.00502 * 11 10 9 36 36 H 1.08002 * 120.79237 * 359.94975 * 13 12 11 37 37 H 1.08000 * 120.42446 * 179.97438 * 14 13 12 38 38 H 1.07999 * 119.61822 * 179.74794 * 15 14 13 39 39 H 1.07997 * 119.61505 * 179.74887 * 17 16 15 40 40 H 1.08000 * 128.09838 * 359.97438 * 21 20 18 41 41 H 1.07997 * 120.07737 * 359.97438 * 24 23 22 42 42 H 1.07996 * 119.93305 * 180.25024 * 25 24 23 43 43 H 1.07998 * 119.85722 * 179.71928 * 26 25 24 44 44 H 1.07997 * 119.93098 * 180.02562 * 27 26 25 45 45 H 1.08004 * 120.07829 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.5879 -4.2474 1.2635 12 6 1.6447 -5.3842 1.5621 13 6 1.9214 -6.6642 1.1060 14 6 1.0257 -7.6792 1.4050 15 6 -0.1081 -7.3826 2.1380 16 7 -0.3365 -6.1544 2.5596 17 6 0.4936 -5.1644 2.2942 18 6 2.7251 -4.0530 -1.1614 19 8 3.4404 -5.0350 -1.1725 20 6 2.4263 -3.3386 -2.4268 21 6 2.8031 -3.7340 -3.7366 22 6 2.2911 -2.7493 -4.5348 23 6 2.3923 -2.6600 -6.0072 24 6 3.0716 -3.6462 -6.7240 25 6 3.1582 -3.5595 -8.0982 26 6 2.5825 -2.4925 -8.7647 27 6 1.9121 -1.5089 -8.0596 28 6 1.8133 -1.5866 -6.6857 29 8 1.6781 -1.8775 -3.7150 30 7 1.7570 -2.2193 -2.5582 31 1 -0.4850 0.8400 0.0004 32 1 0.6248 -2.5571 -0.8897 33 1 0.6241 -2.5567 0.8902 34 1 2.5392 -3.5140 2.0685 35 1 3.6049 -4.6309 1.1825 36 1 2.8132 -6.8657 0.5312 37 1 1.2090 -8.6879 1.0656 38 1 -0.8129 -8.1669 2.3716 39 1 0.2709 -4.1704 2.6531 40 1 3.3633 -4.6083 -4.0335 41 1 3.5256 -4.4770 -6.2045 42 1 3.6801 -4.3240 -8.6545 43 1 2.6570 -2.4269 -9.8402 44 1 1.4646 -0.6787 -8.5859 45 1 1.2894 -0.8184 -6.1364 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058364987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:28 Heat of formation + Delta-G solvation = 103.681495 kcal Electronic energy + Delta-G solvation = -31520.509011 eV Core-core repulsion = 27278.951832 eV Total energy + Delta-G solvation = -4241.557180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.48345 -40.09455 -39.16051 -38.89412 -35.40710 -33.77396 -33.22732 -32.67227 -32.07550 -31.28665 -31.06066 -29.34701 -27.57140 -26.46332 -24.12956 -23.60671 -23.43454 -22.88803 -22.46527 -21.72885 -21.27234 -18.93459 -17.61067 -17.31263 -16.91854 -16.64892 -16.35901 -16.26093 -15.87992 -15.55733 -15.18056 -15.04721 -14.87848 -14.42026 -14.07942 -13.77722 -13.61015 -13.48096 -13.11254 -13.09122 -13.01586 -12.86133 -12.75507 -12.32557 -11.93116 -11.80060 -11.55374 -11.25700 -11.17681 -10.99265 -10.87310 -10.39167 -10.20637 -10.17035 -9.89780 -9.87950 -9.68246 -9.50558 -9.25613 -9.12148 -8.81869 -8.49435 -8.24081 -7.93237 -6.10669 -4.14261 0.68444 1.24362 1.26677 1.50220 1.90259 2.28720 3.22453 3.27788 3.32321 3.34758 3.55921 3.70554 3.77068 4.10775 4.36889 4.54065 4.63643 4.64932 4.78618 4.85336 4.95372 5.00484 5.11192 5.20249 5.25069 5.25809 5.27326 5.33084 5.35386 5.51690 5.59249 5.64187 5.78169 5.85840 5.88409 6.00969 6.06035 6.16316 6.29597 6.32664 6.34052 6.37223 6.51947 6.59858 6.76449 6.90720 7.24167 7.40023 7.79011 8.06048 8.09195 8.16574 8.52244 8.76337 8.87217 9.49661 10.97483 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.007779 B = 0.003435 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.598848 B = 8149.253955 C =10886.682268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.236 3.764 10 N -0.576 5.576 11 C 0.162 3.838 12 C -0.149 4.149 13 C -0.054 4.054 14 C -0.182 4.182 15 C 0.091 3.909 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.599 3.401 19 O -0.560 6.560 20 C -0.039 4.039 21 C -0.164 4.164 22 C -0.028 4.028 23 C -0.007 4.007 24 C -0.096 4.096 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.118 4.118 28 C -0.097 4.097 29 O 0.131 5.869 30 N -0.241 5.241 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.174 0.826 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -9.289 -10.725 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.073 0.927 9 C 0.116 3.884 10 N -0.305 5.305 11 C 0.039 3.961 12 C -0.152 4.152 13 C -0.080 4.080 14 C -0.202 4.202 15 C -0.066 4.066 16 N -0.198 5.198 17 C -0.041 4.041 18 C 0.386 3.614 19 O -0.439 6.439 20 C -0.197 4.197 21 C -0.186 4.186 22 C -0.090 4.090 23 C -0.008 4.008 24 C -0.115 4.115 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.136 4.136 28 C -0.116 4.116 29 O 0.048 5.952 30 N 0.066 4.934 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.191 0.809 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.566 -8.704 -9.220 12.936 hybrid contribution 1.559 0.294 -0.887 1.818 sum 4.125 -8.410 -10.107 13.780 Atomic orbital electron populations 1.69897 1.05885 1.27145 1.49453 1.24772 0.94676 0.98725 0.94644 0.86685 0.79677 0.83184 0.78646 1.20259 1.21114 1.20303 1.21162 0.92930 0.90142 1.51658 0.92735 1.19722 0.87358 0.82227 0.99051 1.48213 1.44147 1.34088 1.04034 1.20218 0.96525 0.92330 0.87041 1.21389 0.98388 0.96076 0.99333 1.21677 0.99135 0.92023 0.95198 1.22109 0.96415 1.00334 1.01333 1.22715 0.95558 0.94010 0.94337 1.67712 1.30829 1.00474 1.20739 1.22812 0.89247 0.98154 0.93865 1.16892 0.79895 0.82619 0.82011 1.90652 1.40125 1.26695 1.86470 1.23192 1.04693 0.95826 0.95995 1.22443 1.04397 1.01510 0.90265 1.22424 1.01686 0.92414 0.92455 1.17649 1.00115 0.96577 0.86448 1.21129 0.98195 0.98011 0.94161 1.21035 1.00222 0.98612 0.93821 1.21273 0.97700 0.94427 1.00030 1.21102 0.99448 0.99201 0.93827 1.21381 0.98298 0.97257 0.94629 1.85084 1.56019 1.42017 1.12117 1.75116 1.12491 1.11503 0.94288 0.92608 0.93202 0.94497 0.88615 0.89596 0.84320 0.85196 0.83237 0.82474 0.80872 0.85319 0.85521 0.85894 0.85510 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.84 16 2 C 0.08 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.53 7.77 -34.44 -0.27 -13.79 16 8 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.24 5.67 4.75 -5.19 -0.02 5.64 16 10 N -0.58 -12.11 2.45 -177.37 -0.44 -12.55 16 11 C 0.16 2.86 5.49 -5.20 -0.03 2.83 16 12 C -0.15 -2.46 5.48 -104.48 -0.57 -3.03 16 13 C -0.05 -0.82 9.74 -39.28 -0.38 -1.20 16 14 C -0.18 -2.40 10.11 -39.44 -0.40 -2.80 16 15 C 0.09 1.26 11.18 -17.55 -0.20 1.06 16 16 N -0.49 -8.07 10.36 -13.25 -0.14 -8.21 16 17 C 0.12 1.95 10.86 -17.55 -0.19 1.76 16 18 C 0.60 12.77 7.64 -12.10 -0.09 12.68 16 19 O -0.56 -11.86 15.88 5.37 0.09 -11.78 16 20 C -0.04 -0.82 6.74 -82.63 -0.56 -1.37 16 21 C -0.16 -2.77 10.34 -38.73 -0.40 -3.17 16 22 C -0.03 -0.45 7.15 -36.20 -0.26 -0.71 16 23 C -0.01 -0.09 5.87 -104.97 -0.62 -0.70 16 24 C -0.10 -1.04 9.58 -39.19 -0.38 -1.42 16 25 C -0.12 -1.07 10.03 -39.64 -0.40 -1.46 16 26 C -0.12 -1.00 10.04 -39.50 -0.40 -1.40 16 27 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 28 C -0.10 -1.16 9.73 -39.19 -0.38 -1.54 16 29 O 0.13 2.56 11.01 16.07 0.18 2.73 16 30 N -0.24 -5.33 7.75 33.35 0.26 -5.07 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.05 1.31 5.94 -51.93 -0.31 1.00 16 33 H 0.04 0.92 8.03 -51.93 -0.42 0.50 16 34 H 0.10 1.61 8.02 -51.93 -0.42 1.19 16 35 H 0.09 1.45 7.45 -51.93 -0.39 1.06 16 36 H 0.14 2.10 7.47 -52.49 -0.39 1.71 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.16 2.56 8.06 -52.49 -0.42 2.14 16 40 H 0.17 2.43 7.46 -52.49 -0.39 2.04 16 41 H 0.13 1.21 7.15 -52.49 -0.38 0.84 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.57 7.96 -52.48 -0.42 1.15 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -31.29 393.58 -9.63 -40.91 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.19 Total: 4.16 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -6.03 Total: -8.25 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.42 Total: -49.66 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.26 Total: -9.05 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.29 -9.63 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058364987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.595 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds