Wall clock time and date at job start Tue Mar 31 2020 05:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48503 * 109.46846 * 89.99950 * 3 2 1 5 5 H 1.48501 * 109.47035 * 209.99662 * 3 2 1 6 6 H 1.48492 * 109.47132 * 329.99776 * 3 2 1 7 7 C 1.38810 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00199 * 202.12343 * 7 2 1 9 9 N 1.36933 * 120.00348 * 22.12814 * 7 2 1 10 10 C 1.46501 * 120.00193 * 34.56068 * 9 7 2 11 11 C 1.50694 * 109.46929 * 90.00101 * 10 9 7 12 12 N 1.30373 * 126.18533 * 89.69608 * 11 10 9 13 13 N 1.28670 * 109.53034 * 179.82270 * 12 11 10 14 14 C 1.31240 * 109.24586 * 0.44031 * 13 12 11 15 15 C 1.47828 * 126.38261 * 179.71111 * 14 13 12 16 16 C 1.39575 * 120.14437 * 0.02799 * 15 14 13 17 17 C 1.37939 * 119.86114 * 179.97438 * 16 15 14 18 18 C 1.38390 * 120.16675 * 359.97438 * 17 16 15 19 19 C 1.38298 * 120.30396 * 0.02562 * 18 17 16 20 20 C 1.38091 * 120.12995 * 359.73717 * 19 18 17 21 21 Br 1.89102 * 120.08507 * 180.28096 * 20 19 18 22 22 O 1.34419 * 126.18745 * 270.00120 * 11 10 9 23 23 C 1.46505 * 120.00057 * 214.56636 * 9 7 2 24 24 C 1.52994 * 117.49722 * 13.67611 * 23 9 7 25 25 C 1.53003 * 117.49664 * 305.01664 * 23 9 7 26 26 H 0.97004 * 120.00096 * 0.14172 * 1 2 3 27 27 H 1.08998 * 109.47462 * 210.00389 * 10 9 7 28 28 H 1.09004 * 109.46489 * 330.00215 * 10 9 7 29 29 H 1.07997 * 120.07115 * 359.94998 * 16 15 14 30 30 H 1.08006 * 119.91815 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.84599 * 179.97438 * 18 17 16 32 32 H 1.07992 * 119.93392 * 180.02562 * 19 18 17 33 33 H 1.08997 * 115.54918 * 159.35372 * 23 9 7 34 34 H 1.08995 * 117.50178 * 0.02562 * 24 23 9 35 35 H 1.09007 * 117.49403 * 145.02296 * 24 23 9 36 36 H 1.08999 * 117.50007 * 214.98135 * 25 23 9 37 37 H 1.09003 * 117.49773 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0305 -1.2366 0.3528 9 7 1.4011 -2.3446 -0.4456 10 6 0.4386 -2.2789 -1.5481 11 6 1.1625 -2.4544 -2.8581 12 7 1.3959 -3.5854 -3.4631 13 7 2.0327 -3.3636 -4.5589 14 6 2.2373 -2.0736 -4.6869 15 6 2.9382 -1.4033 -5.8026 16 6 3.4581 -2.1559 -6.8568 17 6 4.1107 -1.5245 -7.8952 18 6 4.2503 -0.1476 -7.8939 19 6 3.7378 0.6048 -6.8528 20 6 3.0780 -0.0141 -5.8095 21 35 2.3708 1.0167 -4.3906 22 8 1.6895 -1.4735 -3.6112 23 6 1.7119 -3.6325 0.1796 24 6 2.4625 -3.6078 1.5126 25 6 3.1818 -4.0535 0.2370 26 1 -0.4850 0.8401 -0.0021 27 1 -0.3009 -3.0714 -1.4327 28 1 -0.0618 -1.3106 -1.5363 29 1 3.3501 -3.2305 -6.8594 30 1 4.5137 -2.1060 -8.7112 31 1 4.7625 0.3414 -8.7093 32 1 3.8498 1.6789 -6.8582 33 1 0.9691 -4.4169 0.0347 34 1 2.7247 -2.6334 1.9246 35 1 2.2136 -4.3763 2.2445 36 1 3.4059 -5.1149 0.1302 37 1 3.9175 -3.3720 -0.1901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058406869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:29 Heat of formation + Delta-G solvation = 127.076985 kcal Electronic energy + Delta-G solvation = -24202.806149 eV Core-core repulsion = 20609.569844 eV Total energy + Delta-G solvation = -3593.236305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31555 -39.31376 -37.23749 -35.36438 -33.97165 -32.85131 -32.28529 -31.20426 -29.60552 -28.98672 -26.39146 -24.24146 -24.01520 -22.55260 -21.45574 -21.43147 -21.26561 -20.02946 -17.69395 -16.95833 -16.39682 -16.06431 -15.76954 -15.45806 -15.13843 -14.53474 -14.19587 -13.99814 -13.71692 -13.60675 -13.43562 -12.96287 -12.08080 -11.92137 -11.66679 -11.52401 -11.43765 -11.26285 -11.01115 -10.97693 -10.84380 -10.79910 -10.69130 -10.28631 -10.18816 -10.00160 -9.88246 -9.78683 -9.42642 -8.93741 -8.65842 -8.26254 -6.90274 -6.11895 -3.65740 0.50789 0.97225 1.62258 2.12201 2.91450 3.02394 3.19698 3.27797 3.34138 3.54575 4.19136 4.26387 4.56226 4.71559 4.83485 4.94679 5.00572 5.08796 5.13909 5.27980 5.38931 5.57520 5.77974 5.81813 5.88643 5.99625 6.05539 6.07680 6.16638 6.20603 6.38475 6.43050 6.44924 6.51982 6.55072 6.87705 7.07014 7.12684 7.58710 8.16556 8.82148 8.98105 9.45846 9.97798 10.89498 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.005231 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.668341 B = 5351.496671 C = 6928.634127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.026 3.974 3 Si 0.884 3.116 4 H -0.279 1.279 5 H -0.269 1.269 6 H -0.284 1.284 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.529 5.529 10 C 0.217 3.783 11 C 0.191 3.809 12 N -0.317 5.317 13 N -0.268 5.268 14 C 0.143 3.857 15 C 0.028 3.972 16 C -0.075 4.075 17 C -0.107 4.107 18 C -0.105 4.105 19 C -0.093 4.093 20 C -0.078 4.078 21 Br -0.007 7.007 22 O -0.185 6.185 23 C 0.123 3.877 24 C -0.188 4.188 25 C -0.221 4.221 26 H 0.262 0.738 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 1.348 -13.742 14.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.194 1.194 6 H -0.209 1.209 7 C -0.395 4.395 8 H 0.087 0.913 9 N -0.243 5.243 10 C 0.087 3.913 11 C -0.020 4.020 12 N -0.165 5.165 13 N -0.118 5.118 14 C -0.065 4.065 15 C 0.024 3.976 16 C -0.095 4.095 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.113 4.113 20 C -0.160 4.160 21 Br 0.080 6.920 22 O -0.062 6.062 23 C 0.015 3.985 24 C -0.227 4.227 25 C -0.261 4.261 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.149 0.851 29 H 0.163 0.837 30 H 0.154 0.846 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.844 0.664 -13.345 14.213 hybrid contribution 0.834 1.849 -0.063 2.029 sum 5.679 2.513 -13.408 14.776 Atomic orbital electron populations 1.69879 1.05547 1.26604 1.49732 1.25048 0.94973 0.98712 0.98844 0.86548 0.80342 0.83413 0.78560 1.20546 1.19389 1.20945 1.18985 0.95312 0.85196 1.40004 0.91337 1.43357 1.48742 1.02360 1.29881 1.20061 0.89574 1.06435 0.75263 1.31233 0.94077 0.80746 0.95993 1.74335 1.15898 1.24158 1.02129 1.74466 1.12712 1.12054 1.12554 1.24989 1.02053 0.89147 0.90353 1.17196 0.98570 0.90362 0.91510 1.21235 0.95658 1.00939 0.91644 1.21200 0.98391 0.94718 0.98258 1.21310 0.98979 0.94064 0.98063 1.21062 0.96983 1.00695 0.92568 1.22184 1.03311 0.93556 0.96972 1.96969 1.83709 1.68732 1.42587 1.85456 1.54815 1.38454 1.27511 1.21206 0.91776 0.89353 0.96205 1.23112 1.06100 1.02351 0.91091 1.23327 0.99677 0.99688 1.03439 0.92803 0.89880 0.85096 0.83654 0.84553 0.84740 0.84410 0.88516 0.88158 0.90323 0.90484 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.17 11.30 55.49 0.63 -22.55 16 2 C 0.03 0.67 4.97 -17.43 -0.09 0.58 16 3 Si 0.88 20.77 29.61 -169.99 -5.03 15.74 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.27 -6.85 8.17 -15.06 -0.12 -6.97 16 8 H 0.07 1.81 7.09 -52.48 -0.37 1.43 16 9 N -0.53 -12.57 2.79 -167.02 -0.47 -13.04 16 10 C 0.22 4.92 5.96 -5.20 -0.03 4.89 16 11 C 0.19 4.29 8.05 -12.90 -0.10 4.19 16 12 N -0.32 -7.02 12.22 32.58 0.40 -6.62 16 13 N -0.27 -5.59 11.92 32.07 0.38 -5.21 16 14 C 0.14 2.85 7.87 -13.88 -0.11 2.74 16 15 C 0.03 0.44 5.87 -104.96 -0.62 -0.17 16 16 C -0.07 -0.95 9.70 -39.19 -0.38 -1.33 16 17 C -0.11 -1.01 10.03 -39.64 -0.40 -1.41 16 18 C -0.10 -0.94 10.04 -39.50 -0.40 -1.34 16 19 C -0.09 -1.06 9.78 -39.61 -0.39 -1.44 16 20 C -0.08 -1.18 6.26 -39.12 -0.24 -1.43 16 21 Br -0.01 -0.13 30.61 -68.01 -2.08 -2.21 16 22 O -0.19 -4.08 7.90 3.99 0.03 -4.05 16 23 C 0.12 2.58 6.61 -67.93 -0.45 2.13 16 24 C -0.19 -3.64 9.79 -26.70 -0.26 -3.91 16 25 C -0.22 -4.34 10.09 -26.69 -0.27 -4.61 16 26 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.08 1.72 8.04 -51.93 -0.42 1.30 16 28 H 0.13 3.24 5.32 -51.93 -0.28 2.97 16 29 H 0.15 1.76 7.87 -52.49 -0.41 1.35 16 30 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.10 1.87 8.10 -51.93 -0.42 1.45 16 34 H 0.10 2.12 6.87 -51.93 -0.36 1.77 16 35 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.78 8.05 -51.93 -0.42 1.36 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -28.92 340.97 -8.78 -37.71 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.92 Total: 3.16 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -3.86 Total: -8.07 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.94 Total: -47.42 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: 0.03 Total: -4.05 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -2.08 Total: -2.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.92 -8.78 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058406869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.784 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds