Wall clock time and date at job start Tue Mar 31 2020 05:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48503 * 109.46846 * 89.99950 * 3 2 1 5 5 H 1.48501 * 109.47035 * 209.99662 * 3 2 1 6 6 H 1.48492 * 109.47132 * 329.99776 * 3 2 1 7 7 C 1.38810 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00199 * 202.12343 * 7 2 1 9 9 N 1.36933 * 120.00348 * 22.12814 * 7 2 1 10 10 C 1.46501 * 120.00193 * 34.56068 * 9 7 2 11 11 C 1.50694 * 109.46929 * 90.00101 * 10 9 7 12 12 N 1.30373 * 126.18533 * 89.69608 * 11 10 9 13 13 N 1.28670 * 109.53034 * 179.82270 * 12 11 10 14 14 C 1.31240 * 109.24586 * 0.44031 * 13 12 11 15 15 C 1.47828 * 126.38261 * 179.71111 * 14 13 12 16 16 C 1.39575 * 120.14437 * 0.02799 * 15 14 13 17 17 C 1.37939 * 119.86114 * 179.97438 * 16 15 14 18 18 C 1.38390 * 120.16675 * 359.97438 * 17 16 15 19 19 C 1.38298 * 120.30396 * 0.02562 * 18 17 16 20 20 C 1.38091 * 120.12995 * 359.73717 * 19 18 17 21 21 Br 1.89102 * 120.08507 * 180.28096 * 20 19 18 22 22 O 1.34419 * 126.18745 * 270.00120 * 11 10 9 23 23 C 1.46505 * 120.00057 * 214.56636 * 9 7 2 24 24 C 1.52994 * 117.49722 * 13.67611 * 23 9 7 25 25 C 1.53003 * 117.49664 * 305.01664 * 23 9 7 26 26 H 0.97004 * 120.00096 * 0.14172 * 1 2 3 27 27 H 1.08998 * 109.47462 * 210.00389 * 10 9 7 28 28 H 1.09004 * 109.46489 * 330.00215 * 10 9 7 29 29 H 1.07997 * 120.07115 * 359.94998 * 16 15 14 30 30 H 1.08006 * 119.91815 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.84599 * 179.97438 * 18 17 16 32 32 H 1.07992 * 119.93392 * 180.02562 * 19 18 17 33 33 H 1.08997 * 115.54918 * 159.35372 * 23 9 7 34 34 H 1.08995 * 117.50178 * 0.02562 * 24 23 9 35 35 H 1.09007 * 117.49403 * 145.02296 * 24 23 9 36 36 H 1.08999 * 117.50007 * 214.98135 * 25 23 9 37 37 H 1.09003 * 117.49773 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0305 -1.2366 0.3528 9 7 1.4011 -2.3446 -0.4456 10 6 0.4386 -2.2789 -1.5481 11 6 1.1625 -2.4544 -2.8581 12 7 1.3959 -3.5854 -3.4631 13 7 2.0327 -3.3636 -4.5589 14 6 2.2373 -2.0736 -4.6869 15 6 2.9382 -1.4033 -5.8026 16 6 3.4581 -2.1559 -6.8568 17 6 4.1107 -1.5245 -7.8952 18 6 4.2503 -0.1476 -7.8939 19 6 3.7378 0.6048 -6.8528 20 6 3.0780 -0.0141 -5.8095 21 35 2.3708 1.0167 -4.3906 22 8 1.6895 -1.4735 -3.6112 23 6 1.7119 -3.6325 0.1796 24 6 2.4625 -3.6078 1.5126 25 6 3.1818 -4.0535 0.2370 26 1 -0.4850 0.8401 -0.0021 27 1 -0.3009 -3.0714 -1.4327 28 1 -0.0618 -1.3106 -1.5363 29 1 3.3501 -3.2305 -6.8594 30 1 4.5137 -2.1060 -8.7112 31 1 4.7625 0.3414 -8.7093 32 1 3.8498 1.6789 -6.8582 33 1 0.9691 -4.4169 0.0347 34 1 2.7247 -2.6334 1.9246 35 1 2.2136 -4.3763 2.2445 36 1 3.4059 -5.1149 0.1302 37 1 3.9175 -3.3720 -0.1901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058406869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:28 Heat of formation + Delta-G solvation = 108.645538 kcal Electronic energy + Delta-G solvation = -24203.605397 eV Core-core repulsion = 20609.569844 eV Total energy + Delta-G solvation = -3594.035553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.94821 -40.28174 -38.94384 -37.01306 -35.69993 -34.16511 -33.45170 -32.83601 -30.94329 -30.27286 -28.11374 -25.99510 -25.34189 -23.79476 -23.02674 -22.75028 -22.65001 -21.79310 -19.02408 -18.61236 -18.04810 -17.65736 -17.12513 -16.64066 -16.40127 -16.32195 -15.88337 -15.34289 -15.05886 -14.74715 -14.59500 -14.46295 -13.78188 -13.35256 -13.33210 -13.03356 -12.87629 -12.84548 -12.81668 -12.55636 -12.31713 -12.27650 -12.12143 -11.99335 -11.87666 -11.64345 -11.29278 -11.14404 -10.99541 -10.55280 -9.95933 -9.58159 -8.76955 -8.06326 -5.63535 -0.64682 0.05317 0.47415 0.67806 1.29553 1.34629 1.43254 1.43604 1.48187 2.33468 2.54369 2.79787 3.03730 3.27118 3.36278 3.53167 3.69829 3.96270 4.07118 4.19534 4.22919 4.28400 4.37294 4.40809 4.43461 4.53851 4.66558 4.75463 4.83176 4.87984 4.98470 5.06648 5.20013 5.24364 5.28053 5.29619 5.47669 5.55589 5.68968 6.24965 6.90300 7.33308 7.57195 8.06997 8.92000 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.012120 B = 0.005231 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.668341 B = 5351.496671 C = 6928.634127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 0.921 3.079 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.284 1.284 7 C -0.268 4.268 8 H 0.055 0.945 9 N -0.543 5.543 10 C 0.224 3.776 11 C 0.174 3.826 12 N -0.322 5.322 13 N -0.290 5.290 14 C 0.159 3.841 15 C -0.017 4.017 16 C -0.075 4.075 17 C -0.091 4.091 18 C -0.078 4.078 19 C -0.094 4.094 20 C -0.091 4.091 21 Br -0.048 7.048 22 O -0.199 6.199 23 C 0.100 3.900 24 C -0.175 4.175 25 C -0.211 4.211 26 H 0.260 0.740 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.147 0.853 30 H 0.181 0.819 31 H 0.183 0.817 32 H 0.159 0.841 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.115 1.065 -16.461 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.205 4.205 3 Si 0.748 3.252 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.398 4.398 8 H 0.072 0.928 9 N -0.259 5.259 10 C 0.094 3.906 11 C -0.039 4.039 12 N -0.170 5.170 13 N -0.138 5.138 14 C -0.050 4.050 15 C -0.021 4.021 16 C -0.095 4.095 17 C -0.109 4.109 18 C -0.097 4.097 19 C -0.114 4.114 20 C -0.172 4.172 21 Br 0.039 6.961 22 O -0.077 6.077 23 C -0.008 4.008 24 C -0.214 4.214 25 C -0.251 4.251 26 H 0.070 0.930 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.164 0.836 30 H 0.198 0.802 31 H 0.201 0.799 32 H 0.176 0.824 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.130 0.870 36 H 0.121 0.879 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.687 0.353 -16.073 17.412 hybrid contribution 0.410 1.920 0.498 2.026 sum 7.097 2.273 -15.575 17.266 Atomic orbital electron populations 1.69946 1.06160 1.26752 1.50977 1.25443 0.95455 1.00340 0.99226 0.85964 0.79298 0.81394 0.78520 1.19983 1.19900 1.20912 1.18947 0.94751 0.86326 1.39770 0.92764 1.43450 1.48845 1.02810 1.30759 1.19837 0.89595 1.05702 0.75454 1.30954 0.95297 0.81043 0.96562 1.74243 1.16017 1.24165 1.02603 1.74406 1.14230 1.12675 1.12499 1.25870 1.00012 0.88995 0.90117 1.17461 1.01483 0.91145 0.92040 1.21455 0.95468 1.01072 0.91490 1.21722 0.96132 0.95338 0.97717 1.21903 0.96325 0.93813 0.97637 1.21442 0.95959 1.02099 0.91864 1.22250 1.04914 0.92886 0.97184 1.96928 1.84521 1.69475 1.45138 1.85454 1.55202 1.38734 1.28285 1.21500 0.92956 0.88825 0.97487 1.23103 1.04904 1.02182 0.91165 1.23254 0.98047 1.00526 1.03261 0.93009 0.88449 0.87288 0.83553 0.80169 0.79929 0.82374 0.86733 0.90425 0.87043 0.87858 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.86 11.30 21.65 0.24 -48.61 16 2 C -0.01 -0.27 4.97 84.86 0.42 0.15 16 3 Si 0.92 43.68 29.61 68.60 2.03 45.71 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.27 -14.28 8.17 84.03 0.69 -13.59 16 8 H 0.05 2.99 7.09 -2.91 -0.02 2.96 16 9 N -0.54 -26.51 2.79 -682.34 -1.90 -28.41 16 10 C 0.22 10.54 5.96 85.63 0.51 11.05 16 11 C 0.17 8.10 8.05 88.32 0.71 8.81 16 12 N -0.32 -14.62 12.22 -165.34 -2.02 -16.64 16 13 N -0.29 -12.31 11.92 -166.31 -1.98 -14.29 16 14 C 0.16 6.46 7.87 87.32 0.69 7.14 16 15 C -0.02 -0.55 5.87 -20.08 -0.12 -0.67 16 16 C -0.07 -1.71 9.70 22.52 0.22 -1.50 16 17 C -0.09 -1.25 10.03 22.23 0.22 -1.02 16 18 C -0.08 -0.96 10.04 22.32 0.22 -0.74 16 19 C -0.09 -1.82 9.78 22.25 0.22 -1.60 16 20 C -0.09 -2.65 6.26 22.57 0.14 -2.51 16 21 Br -0.05 -1.71 30.61 -20.37 -0.62 -2.33 16 22 O -0.20 -9.10 7.90 -8.63 -0.07 -9.17 16 23 C 0.10 4.18 6.61 44.99 0.30 4.48 16 24 C -0.18 -6.67 9.79 30.62 0.30 -6.37 16 25 C -0.21 -8.19 10.09 30.62 0.31 -7.88 16 26 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 27 H 0.10 4.15 8.04 -2.39 -0.02 4.13 16 28 H 0.11 5.66 5.32 -2.39 -0.01 5.65 16 29 H 0.15 3.28 7.87 -2.91 -0.02 3.26 16 30 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.12 4.35 8.10 -2.39 -0.02 4.33 16 34 H 0.08 3.33 6.87 -2.39 -0.02 3.31 16 35 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 36 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.06 2.51 8.05 -2.39 -0.02 2.49 16 Total: -1.00 -66.52 340.97 1.62 -64.90 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.11 Total: 13.09 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.83 Total: -4.23 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -5.66 Total: -107.96 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.07 Total: -9.17 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 35 Polarization: -1.71 SS G_CDS: -0.62 Total: -2.33 kcal Total: -66.52 1.62 -64.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058406869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.545 kcal (2) G-P(sol) polarization free energy of solvation -66.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds