Wall clock time and date at job start Tue Mar 31 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51297 * 120.80327 * 2 1 4 4 C 1.53394 * 108.42565 * 232.94064 * 3 2 1 5 5 N 1.46855 * 108.77719 * 310.57250 * 4 3 2 6 6 C 1.34775 * 120.38430 * 237.62305 * 5 4 3 7 7 O 1.21550 * 119.99826 * 5.91228 * 6 5 4 8 8 C 1.47848 * 119.99832 * 185.91405 * 6 5 4 9 9 C 1.39573 * 120.14143 * 223.75611 * 8 6 5 10 10 C 1.37957 * 119.84978 * 179.97438 * 9 8 6 11 11 C 1.38359 * 120.14732 * 359.97438 * 10 9 8 12 12 S 1.76203 * 119.85380 * 179.97438 * 11 10 9 13 13 O 1.42094 * 106.40351 * 336.46228 * 12 11 10 14 14 O 1.42096 * 106.40206 * 203.53877 * 12 11 10 15 15 N 1.65607 * 107.21823 * 90.00252 * 12 11 10 16 16 C 1.46504 * 119.99729 * 64.99508 * 15 12 11 17 17 C 1.50704 * 109.46782 * 165.00128 * 16 15 12 18 18 H 1.08004 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99706 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00386 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47189 * 60.00021 * 21 19 17 23 23 H 1.48495 * 109.47040 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47229 * 300.00095 * 21 19 17 25 25 C 1.38359 * 120.29316 * 0.27689 * 11 10 9 26 26 C 1.37959 * 120.13834 * 359.48695 * 25 11 10 27 27 C 1.46860 * 119.23181 * 57.89818 * 5 4 3 28 28 C 1.51292 * 120.81203 * 179.97438 * 2 1 3 29 29 H 1.07996 * 120.00027 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99244 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.67210 * 113.20842 * 3 2 1 32 32 H 1.09001 * 109.67413 * 352.67719 * 3 2 1 33 33 H 1.09003 * 109.58467 * 190.78789 * 4 3 2 34 34 H 1.08995 * 109.58848 * 70.36827 * 4 3 2 35 35 H 1.08001 * 120.07705 * 0.02562 * 9 8 6 36 36 H 1.08009 * 119.92675 * 180.02562 * 10 9 8 37 37 H 0.96992 * 120.00061 * 244.72525 * 15 12 11 38 38 H 1.09000 * 109.47107 * 285.00095 * 16 15 12 39 39 H 1.08995 * 109.46755 * 45.00492 * 16 15 12 40 40 H 0.96999 * 119.99921 * 180.02562 * 20 19 17 41 41 H 1.07998 * 119.93032 * 179.74180 * 25 11 10 42 42 H 1.08005 * 120.06949 * 180.25362 * 26 25 11 43 43 H 1.09000 * 109.59052 * 61.89266 * 27 5 4 44 44 H 1.09004 * 109.58698 * 182.31570 * 27 5 4 45 45 H 1.09002 * 109.67453 * 246.79648 * 28 2 1 46 46 H 1.09005 * 109.67350 * 7.32788 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0848 1.2995 0.0000 4 6 3.0864 1.2669 -1.1613 5 7 3.8275 0.0001 -1.1109 6 6 5.1722 0.0002 -1.0196 7 8 5.7711 1.0473 -0.8704 8 6 5.9187 -1.2734 -1.1010 9 6 6.9665 -1.5294 -0.2152 10 6 7.6587 -2.7200 -0.2962 11 6 7.3159 -3.6595 -1.2524 12 16 8.2056 -5.1773 -1.3493 13 8 9.4776 -4.9349 -0.7643 14 8 8.0392 -5.6558 -2.6769 15 7 7.4355 -6.2609 -0.3617 16 6 6.0724 -6.6969 -0.6749 17 6 5.7401 -7.9253 0.1325 18 1 6.4710 -8.3395 0.8112 19 6 4.5030 -8.5204 0.0045 20 7 3.6131 -8.0164 -0.8223 21 14 4.0908 -10.0427 1.0058 22 1 4.1879 -9.7245 2.4531 23 1 2.7092 -10.4847 0.6883 24 1 5.0474 -11.1284 0.6724 25 6 6.2816 -3.4098 -2.1368 26 6 5.5782 -2.2252 -2.0634 27 6 3.0869 -1.2669 -1.1672 28 6 2.0849 -1.2994 0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 2.6201 1.4076 0.9433 32 1 1.3983 2.1360 -0.1308 33 1 3.7818 2.1010 -1.0677 34 1 2.5509 1.3395 -2.1079 35 1 7.2344 -0.7975 0.5324 36 1 8.4696 -2.9196 0.3888 37 1 7.8884 -6.6098 0.4218 38 1 5.3705 -5.8999 -0.4293 39 1 6.0005 -6.9299 -1.7372 40 1 2.7426 -8.4349 -0.9120 41 1 6.0216 -4.1454 -2.8835 42 1 4.7683 -2.0332 -2.7516 43 1 2.5514 -1.3354 -2.1141 44 1 3.7827 -2.1012 -1.0774 45 1 2.6202 -1.4070 0.9440 46 1 1.3986 -2.1361 -0.1300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058433882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:43 Heat of formation + Delta-G solvation = -61.672935 kcal Electronic energy + Delta-G solvation = -30528.247275 eV Core-core repulsion = 26317.245078 eV Total energy + Delta-G solvation = -4211.002197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.85560 -38.79601 -37.66449 -36.81190 -35.42677 -34.70831 -34.37521 -32.32017 -32.21703 -31.25385 -30.98862 -28.54380 -26.81364 -24.96581 -24.06166 -22.89111 -22.84916 -22.51645 -20.39688 -19.20404 -18.69376 -17.77461 -17.39645 -17.21204 -16.57327 -16.02040 -15.82979 -15.44312 -15.24653 -15.00406 -14.87302 -14.62143 -14.50924 -14.18557 -13.89319 -13.70431 -13.53768 -13.37489 -13.07721 -13.00847 -12.73100 -12.55875 -12.29229 -12.18417 -11.88582 -11.70037 -11.64262 -11.60246 -11.38186 -11.21492 -10.98864 -10.89866 -10.86560 -10.76656 -10.18859 -10.12214 -9.65768 -9.52592 -9.41034 -9.11044 -8.97238 -8.83806 -8.31367 -6.24993 -4.29421 0.37503 0.90463 1.20229 1.91834 2.38771 2.62016 3.22360 3.27205 3.28803 3.34302 3.68255 4.08659 4.17631 4.29009 4.36499 4.44913 4.50746 4.67719 4.74010 4.87723 4.89530 4.91897 5.08707 5.12491 5.16455 5.22206 5.32595 5.39398 5.42344 5.46544 5.51357 5.59870 5.64702 5.73766 5.82726 5.91104 6.02245 6.05739 6.18609 6.31756 6.34673 6.54193 6.64907 7.01284 7.18564 7.25186 7.71223 7.73038 7.80708 8.09678 8.74229 9.35913 10.85264 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.003293 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.340563 B = 8499.869697 C =11258.229381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.124 4.124 3 C -0.100 4.100 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.562 3.438 7 O -0.532 6.532 8 C -0.083 4.083 9 C -0.093 4.093 10 C -0.022 4.022 11 C -0.649 4.649 12 S 2.689 3.311 13 O -0.976 6.976 14 O -0.958 6.958 15 N -1.101 6.101 16 C 0.246 3.754 17 C -0.531 4.531 18 H 0.066 0.934 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.017 4.017 26 C -0.114 4.114 27 C 0.096 3.904 28 C -0.103 4.103 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.412 0.588 38 H 0.022 0.978 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 16.457 0.295 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.125 4.125 3 C -0.138 4.138 4 C -0.007 4.007 5 N -0.338 5.338 6 C 0.350 3.650 7 O -0.409 6.409 8 C -0.087 4.087 9 C -0.113 4.113 10 C -0.041 4.041 11 C -0.734 4.734 12 S 2.776 3.224 13 O -0.966 6.966 14 O -0.948 6.948 15 N -0.864 5.864 16 C 0.123 3.877 17 C -0.571 4.571 18 H 0.084 0.916 19 C -0.140 4.140 20 N -0.528 5.528 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.036 4.036 26 C -0.133 4.133 27 C -0.026 4.026 28 C -0.140 4.140 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.155 0.845 36 H 0.164 0.836 37 H 0.246 0.754 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.169 0.831 42 H 0.156 0.844 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.098 0.902 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.533 16.954 -0.385 17.323 hybrid contribution -0.990 -0.505 1.121 1.579 sum -4.523 16.449 0.736 17.076 Atomic orbital electron populations 1.23684 0.94829 1.02060 1.02120 1.21850 0.95056 0.95554 0.99997 1.21187 0.97786 0.95429 0.99398 1.21621 0.94340 0.86514 0.98248 1.47972 1.05389 1.07783 1.72607 1.18442 0.81783 0.88773 0.75967 1.90781 1.68279 1.32869 1.49013 1.20098 0.96909 0.93843 0.97813 1.21220 0.94084 0.97340 0.98613 1.20898 0.96834 0.91776 0.94632 1.31490 1.13399 1.23221 1.05260 1.01986 0.72933 0.73311 0.74177 1.93537 1.38640 1.85952 1.78509 1.93576 1.86212 1.78662 1.36369 1.55446 1.29607 1.57943 1.43410 1.19102 0.75197 0.95783 0.97628 1.21154 0.99790 1.11170 1.24937 0.91627 1.24941 0.95960 0.97681 0.95418 1.69911 1.06391 1.40595 1.35932 0.86486 0.77546 0.82684 0.80296 1.20090 1.21101 1.19983 1.20989 0.90733 0.96552 0.95323 1.21432 1.00065 0.93296 0.98514 1.22296 0.95274 0.86079 0.98971 1.21300 0.98024 0.95489 0.99233 0.88432 0.88112 0.90452 0.90071 0.88518 0.90951 0.84481 0.83568 0.75351 0.96016 0.94266 0.92393 0.83135 0.84406 0.90397 0.87787 0.90231 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 13.99 29.01 0.41 -1.05 16 2 C -0.12 -1.06 5.31 -100.48 -0.53 -1.59 16 3 C -0.10 -0.79 6.20 -27.39 -0.17 -0.96 16 4 C 0.11 1.03 6.44 -3.64 -0.02 1.00 16 5 N -0.60 -6.44 2.90 -173.43 -0.50 -6.94 16 6 C 0.56 7.41 7.27 -12.33 -0.09 7.32 16 7 O -0.53 -8.45 16.36 5.32 0.09 -8.37 16 8 C -0.08 -1.10 5.03 -104.97 -0.53 -1.63 16 9 C -0.09 -1.23 9.68 -39.19 -0.38 -1.61 16 10 C -0.02 -0.31 9.50 -39.64 -0.38 -0.68 16 11 C -0.65 -9.98 5.95 -39.49 -0.24 -10.22 16 12 S 2.69 46.99 5.74 -107.50 -0.62 46.37 16 13 O -0.98 -17.94 17.27 -57.17 -0.99 -18.93 16 14 O -0.96 -19.39 16.73 -57.17 -0.96 -20.35 16 15 N -1.10 -20.75 5.99 -11.65 -0.07 -20.82 16 16 C 0.25 5.66 5.98 -5.19 -0.03 5.63 16 17 C -0.53 -13.51 9.27 -34.44 -0.32 -13.83 16 18 H 0.07 1.60 7.65 -52.48 -0.40 1.20 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 21 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 C -0.02 -0.24 9.50 -39.64 -0.38 -0.62 16 26 C -0.11 -1.43 7.37 -39.19 -0.29 -1.72 16 27 C 0.10 0.91 5.19 -3.37 -0.02 0.89 16 28 C -0.10 -0.94 6.22 -27.12 -0.17 -1.11 16 29 H 0.10 0.63 7.91 -52.49 -0.42 0.22 16 30 H 0.10 0.74 7.91 -52.48 -0.42 0.33 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.50 7.88 -51.93 -0.41 0.09 16 33 H 0.10 0.95 6.96 -51.93 -0.36 0.59 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.15 1.77 7.60 -52.48 -0.40 1.37 16 37 H 0.41 7.07 8.53 -34.47 -0.29 6.78 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 40 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 41 H 0.15 2.12 7.60 -52.49 -0.40 1.72 16 42 H 0.14 1.38 6.90 -52.48 -0.36 1.02 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 1.08 4.64 -51.93 -0.24 0.84 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -32.57 393.80 -10.81 -43.37 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.18 Total: 6.65 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -3.23 Total: -18.62 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.16 Total: -51.03 kcal Atomic # 8 Polarization: -45.79 SS G_CDS: -1.86 Total: -47.64 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 46.99 SS G_CDS: -0.62 Total: 46.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.57 -10.81 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058433882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.299 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds