Wall clock time and date at job start Tue Mar 31 2020 06:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.51297 * 120.80327 * 2 1 4 4 C 1.53394 * 108.42565 * 232.94064 * 3 2 1 5 5 N 1.46855 * 108.77719 * 310.57250 * 4 3 2 6 6 C 1.34775 * 120.38430 * 237.62305 * 5 4 3 7 7 O 1.21550 * 119.99826 * 5.91228 * 6 5 4 8 8 C 1.47848 * 119.99832 * 185.91405 * 6 5 4 9 9 C 1.39573 * 120.14143 * 223.75611 * 8 6 5 10 10 C 1.37957 * 119.84978 * 179.97438 * 9 8 6 11 11 C 1.38359 * 120.14732 * 359.97438 * 10 9 8 12 12 S 1.76203 * 119.85380 * 179.97438 * 11 10 9 13 13 O 1.42094 * 106.40351 * 336.46228 * 12 11 10 14 14 O 1.42096 * 106.40206 * 203.53877 * 12 11 10 15 15 N 1.65607 * 107.21823 * 90.00252 * 12 11 10 16 16 C 1.46504 * 119.99729 * 64.99508 * 15 12 11 17 17 C 1.50704 * 109.46782 * 165.00128 * 16 15 12 18 18 H 1.08004 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99706 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00386 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47189 * 60.00021 * 21 19 17 23 23 H 1.48495 * 109.47040 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47229 * 300.00095 * 21 19 17 25 25 C 1.38359 * 120.29316 * 0.27689 * 11 10 9 26 26 C 1.37959 * 120.13834 * 359.48695 * 25 11 10 27 27 C 1.46860 * 119.23181 * 57.89818 * 5 4 3 28 28 C 1.51292 * 120.81203 * 179.97438 * 2 1 3 29 29 H 1.07996 * 120.00027 * 359.97438 * 1 2 3 30 30 H 1.08006 * 119.99244 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.67210 * 113.20842 * 3 2 1 32 32 H 1.09001 * 109.67413 * 352.67719 * 3 2 1 33 33 H 1.09003 * 109.58467 * 190.78789 * 4 3 2 34 34 H 1.08995 * 109.58848 * 70.36827 * 4 3 2 35 35 H 1.08001 * 120.07705 * 0.02562 * 9 8 6 36 36 H 1.08009 * 119.92675 * 180.02562 * 10 9 8 37 37 H 0.96992 * 120.00061 * 244.72525 * 15 12 11 38 38 H 1.09000 * 109.47107 * 285.00095 * 16 15 12 39 39 H 1.08995 * 109.46755 * 45.00492 * 16 15 12 40 40 H 0.96999 * 119.99921 * 180.02562 * 20 19 17 41 41 H 1.07998 * 119.93032 * 179.74180 * 25 11 10 42 42 H 1.08005 * 120.06949 * 180.25362 * 26 25 11 43 43 H 1.09000 * 109.59052 * 61.89266 * 27 5 4 44 44 H 1.09004 * 109.58698 * 182.31570 * 27 5 4 45 45 H 1.09002 * 109.67453 * 246.79648 * 28 2 1 46 46 H 1.09005 * 109.67350 * 7.32788 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0848 1.2995 0.0000 4 6 3.0864 1.2669 -1.1613 5 7 3.8275 0.0001 -1.1109 6 6 5.1722 0.0002 -1.0196 7 8 5.7711 1.0473 -0.8704 8 6 5.9187 -1.2734 -1.1010 9 6 6.9665 -1.5294 -0.2152 10 6 7.6587 -2.7200 -0.2962 11 6 7.3159 -3.6595 -1.2524 12 16 8.2056 -5.1773 -1.3493 13 8 9.4776 -4.9349 -0.7643 14 8 8.0392 -5.6558 -2.6769 15 7 7.4355 -6.2609 -0.3617 16 6 6.0724 -6.6969 -0.6749 17 6 5.7401 -7.9253 0.1325 18 1 6.4710 -8.3395 0.8112 19 6 4.5030 -8.5204 0.0045 20 7 3.6131 -8.0164 -0.8223 21 14 4.0908 -10.0427 1.0058 22 1 4.1879 -9.7245 2.4531 23 1 2.7092 -10.4847 0.6883 24 1 5.0474 -11.1284 0.6724 25 6 6.2816 -3.4098 -2.1368 26 6 5.5782 -2.2252 -2.0634 27 6 3.0869 -1.2669 -1.1672 28 6 2.0849 -1.2994 0.0006 29 1 -0.5400 0.9353 0.0004 30 1 -0.5399 -0.9354 -0.0004 31 1 2.6201 1.4076 0.9433 32 1 1.3983 2.1360 -0.1308 33 1 3.7818 2.1010 -1.0677 34 1 2.5509 1.3395 -2.1079 35 1 7.2344 -0.7975 0.5324 36 1 8.4696 -2.9196 0.3888 37 1 7.8884 -6.6098 0.4218 38 1 5.3705 -5.8999 -0.4293 39 1 6.0005 -6.9299 -1.7372 40 1 2.7426 -8.4349 -0.9120 41 1 6.0216 -4.1454 -2.8835 42 1 4.7683 -2.0332 -2.7516 43 1 2.5514 -1.3354 -2.1141 44 1 3.7827 -2.1012 -1.0774 45 1 2.6202 -1.4070 0.9440 46 1 1.3986 -2.1361 -0.1300 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058433882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:42 Heat of formation + Delta-G solvation = -82.970577 kcal Electronic energy + Delta-G solvation = -30529.170810 eV Core-core repulsion = 26317.245078 eV Total energy + Delta-G solvation = -4211.925732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.129 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82447 -39.79157 -38.57379 -38.31812 -36.94598 -36.45100 -35.19101 -34.10002 -33.20181 -32.32878 -31.89074 -29.30365 -28.69462 -25.93891 -24.86662 -24.46854 -23.81943 -23.73497 -21.29091 -20.62117 -19.55108 -19.26951 -18.75538 -18.18134 -17.72337 -17.55883 -17.19227 -16.71470 -16.34856 -15.89878 -15.89726 -15.83123 -15.59712 -15.18565 -15.02045 -14.70630 -14.66128 -14.56090 -14.26499 -14.13961 -14.01270 -13.88574 -13.58236 -13.50807 -13.22218 -13.12771 -12.95711 -12.72334 -12.55066 -12.45173 -12.31587 -12.13018 -12.03187 -11.98367 -11.57955 -11.40876 -11.17412 -10.82194 -10.52110 -10.37308 -10.17857 -10.08055 -9.61623 -8.21615 -6.32364 -0.78896 -0.48741 0.12724 1.23663 1.40459 1.48042 1.49343 1.56779 1.72895 2.07885 2.38106 2.45856 2.76724 3.13721 3.15705 3.28718 3.65872 3.69242 3.74294 3.78268 3.97207 4.11121 4.19475 4.23320 4.25225 4.38994 4.40568 4.47896 4.63098 4.66632 4.71555 4.77873 4.80718 4.87548 4.90744 4.95982 4.98625 5.03451 5.06017 5.31513 5.35358 5.36992 5.56720 5.70113 5.78012 5.91218 6.01202 6.10728 6.33427 6.80554 6.82704 7.36786 8.88923 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.003293 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.340563 B = 8499.869697 C =11258.229381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.140 4.140 3 C -0.094 4.094 4 C 0.111 3.889 5 N -0.597 5.597 6 C 0.561 3.439 7 O -0.565 6.565 8 C -0.085 4.085 9 C -0.095 4.095 10 C -0.025 4.025 11 C -0.658 4.658 12 S 2.708 3.292 13 O -0.984 6.984 14 O -0.989 6.989 15 N -1.101 6.101 16 C 0.258 3.742 17 C -0.552 4.552 18 H 0.072 0.928 19 C 0.015 3.985 20 N -0.920 5.920 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.031 4.031 26 C -0.103 4.103 27 C 0.094 3.906 28 C -0.103 4.103 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.419 0.581 38 H 0.018 0.982 39 H 0.015 0.985 40 H 0.269 0.731 41 H 0.149 0.851 42 H 0.164 0.836 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 17.161 0.888 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.140 4.140 3 C -0.131 4.131 4 C -0.010 4.010 5 N -0.328 5.328 6 C 0.349 3.651 7 O -0.445 6.445 8 C -0.088 4.088 9 C -0.114 4.114 10 C -0.044 4.044 11 C -0.746 4.746 12 S 2.798 3.202 13 O -0.974 6.974 14 O -0.980 6.980 15 N -0.863 5.863 16 C 0.134 3.866 17 C -0.591 4.591 18 H 0.090 0.910 19 C -0.186 4.186 20 N -0.559 5.559 21 Si 0.790 3.210 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.051 4.051 26 C -0.122 4.122 27 C -0.028 4.028 28 C -0.140 4.140 29 H 0.131 0.869 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.255 0.745 38 H 0.036 0.964 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.167 0.833 42 H 0.182 0.818 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.084 0.916 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.844 17.614 0.218 18.269 hybrid contribution -0.642 -0.621 0.928 1.288 sum -5.486 16.993 1.146 17.893 Atomic orbital electron populations 1.23857 0.94537 1.02925 1.00280 1.21841 0.95399 0.95213 1.01569 1.21148 0.97674 0.96040 0.98283 1.21794 0.94262 0.85228 0.99732 1.48061 1.04720 1.08978 1.71021 1.18418 0.82549 0.88138 0.75977 1.90768 1.69066 1.33689 1.50934 1.20278 0.96841 0.94004 0.97706 1.21437 0.93816 0.97293 0.98887 1.21102 0.97284 0.91623 0.94403 1.31067 1.14308 1.22275 1.06957 1.01163 0.72592 0.73388 0.73010 1.93520 1.39224 1.86172 1.78495 1.93532 1.86664 1.79794 1.37961 1.55260 1.28178 1.59066 1.43797 1.18715 0.76911 0.95129 0.95861 1.21586 1.00196 1.12046 1.25258 0.90994 1.25757 0.95945 1.00482 0.96399 1.70013 1.06772 1.41950 1.37189 0.85499 0.77230 0.79131 0.79145 1.19160 1.20837 1.19707 1.21110 0.91024 0.97478 0.95446 1.21630 1.00008 0.92161 0.98429 1.22401 0.95136 0.85099 1.00190 1.21274 0.98003 0.96397 0.98371 0.86943 0.87912 0.91649 0.87912 0.89549 0.89027 0.82985 0.82013 0.74510 0.96424 0.96673 0.92253 0.83294 0.81826 0.88411 0.88793 0.91594 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.29 13.99 67.78 0.95 -1.34 16 2 C -0.14 -2.10 5.31 -16.11 -0.09 -2.18 16 3 C -0.09 -1.30 6.20 30.17 0.19 -1.12 16 4 C 0.11 1.79 6.44 86.44 0.56 2.35 16 5 N -0.60 -11.87 2.90 -820.88 -2.38 -14.25 16 6 C 0.56 14.28 7.27 86.79 0.63 14.91 16 7 O -0.56 -17.66 16.36 -3.87 -0.06 -17.72 16 8 C -0.08 -2.16 5.03 -20.09 -0.10 -2.26 16 9 C -0.09 -2.41 9.68 22.53 0.22 -2.19 16 10 C -0.02 -0.67 9.50 22.23 0.21 -0.46 16 11 C -0.66 -20.16 5.95 22.33 0.13 -20.03 16 12 S 2.71 95.54 5.74 -56.49 -0.32 95.22 16 13 O -0.98 -35.88 17.27 -128.00 -2.21 -38.09 16 14 O -0.99 -40.96 16.73 -128.00 -2.14 -43.10 16 15 N -1.10 -41.88 5.99 -190.78 -1.14 -43.02 16 16 C 0.26 12.09 5.98 85.63 0.51 12.60 16 17 C -0.55 -28.11 9.27 25.60 0.24 -27.88 16 18 H 0.07 3.48 7.65 -2.91 -0.02 3.45 16 19 C 0.01 0.76 5.46 84.65 0.46 1.22 16 20 N -0.92 -49.86 13.29 21.45 0.28 -49.58 16 21 Si 0.97 40.50 29.54 68.60 2.03 42.53 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 C -0.03 -0.90 9.50 22.23 0.21 -0.69 16 26 C -0.10 -2.49 7.37 22.53 0.17 -2.33 16 27 C 0.09 1.63 5.19 86.62 0.45 2.08 16 28 C -0.10 -1.76 6.22 30.34 0.19 -1.57 16 29 H 0.11 1.10 7.91 -2.91 -0.02 1.08 16 30 H 0.10 1.27 7.91 -2.91 -0.02 1.25 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 0.99 7.88 -2.39 -0.02 0.97 16 33 H 0.09 1.61 6.96 -2.39 -0.02 1.59 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.16 3.75 7.60 -2.91 -0.02 3.73 16 37 H 0.42 14.40 8.53 -96.75 -0.83 13.57 16 38 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 39 H 0.02 0.79 7.75 -2.39 -0.02 0.77 16 40 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 41 H 0.15 4.29 7.60 -2.91 -0.02 4.26 16 42 H 0.16 2.99 6.90 -2.91 -0.02 2.97 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.09 1.84 4.64 -2.38 -0.01 1.83 16 45 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.48 7.88 -2.38 -0.02 1.46 16 Total: -1.00 -68.74 393.80 -0.84 -69.58 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.19 Total: 27.32 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: 4.93 Total: -28.88 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -3.24 Total: -106.85 kcal Atomic # 8 Polarization: -94.50 SS G_CDS: -4.41 Total: -98.91 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 95.54 SS G_CDS: -0.32 Total: 95.22 kcal Total: -68.74 -0.84 -69.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058433882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.390 kcal (2) G-P(sol) polarization free energy of solvation -68.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds