Wall clock time and date at job start Tue Mar 31 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35949 * 116.99928 * 2 1 4 4 C 1.38186 * 120.00669 * 359.72489 * 3 2 1 5 5 C 1.39763 * 119.85237 * 179.77340 * 4 3 2 6 6 C 1.47367 * 120.06140 * 180.22804 * 5 4 3 7 7 N 1.29834 * 119.99507 * 199.81353 * 6 5 4 8 8 N 1.40098 * 120.00279 * 18.18253 * 7 6 5 9 9 C 1.34772 * 119.99824 * 188.14803 * 8 7 6 10 10 O 1.21317 * 120.00298 * 359.97438 * 9 8 7 11 11 C 1.50704 * 119.99951 * 179.97438 * 9 8 7 12 12 N 1.46896 * 109.47241 * 179.97438 * 11 9 8 13 13 C 1.47013 * 111.00048 * 293.63652 * 12 11 9 14 14 C 1.53099 * 109.25984 * 177.60769 * 13 12 11 15 15 O 1.43018 * 109.25955 * 56.84720 * 14 13 12 16 16 C 1.43021 * 113.73475 * 301.33324 * 15 14 13 17 17 C 1.47014 * 111.00005 * 170.00347 * 12 11 9 18 18 C 1.39829 * 119.87389 * 0.51983 * 5 4 3 19 19 C 1.37759 * 120.00929 * 359.73094 * 18 5 4 20 20 C 1.38967 * 120.15060 * 359.97438 * 19 18 5 21 21 O 1.35693 * 119.93642 * 179.97438 * 20 19 18 22 22 C 1.34790 * 117.00298 * 5.71037 * 21 20 19 23 23 H 1.08004 * 119.99619 * 4.43854 * 22 21 20 24 24 C 1.38620 * 120.00247 * 184.44914 * 22 21 20 25 25 N 1.31571 * 120.00106 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00132 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46848 * 59.99406 * 26 24 22 28 28 H 1.48498 * 109.47310 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.46838 * 299.99759 * 26 24 22 30 30 H 1.09000 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47006 * 60.00200 * 1 2 3 32 32 H 1.08996 * 109.47407 * 299.99950 * 1 2 3 33 33 H 1.07998 * 120.07556 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.00017 * 19.82121 * 6 5 4 35 35 H 0.97003 * 119.99967 * 8.14079 * 8 7 6 36 36 H 1.08994 * 109.47355 * 300.00087 * 11 9 8 37 37 H 1.09001 * 109.46701 * 59.99818 * 11 9 8 38 38 H 1.09000 * 109.50798 * 297.54262 * 13 12 11 39 39 H 1.09002 * 109.51137 * 57.67071 * 13 12 11 40 40 H 1.09004 * 109.50685 * 296.91669 * 14 13 12 41 41 H 1.09003 * 109.54554 * 176.80490 * 14 13 12 42 42 H 1.08997 * 109.50551 * 298.73173 * 16 15 14 43 43 H 1.09001 * 109.53491 * 178.62487 * 16 15 14 44 44 H 1.09002 * 109.50435 * 302.32065 * 17 12 11 45 45 H 1.08991 * 109.50935 * 62.41510 * 17 12 11 46 46 H 1.07999 * 119.99492 * 179.74760 * 18 5 4 47 47 H 1.08004 * 119.92862 * 179.97438 * 19 18 5 48 48 H 0.96999 * 120.00329 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2936 2.3703 -0.0057 5 6 1.9314 3.6139 -0.0009 6 6 1.1334 4.8528 -0.0020 7 7 1.6729 5.9720 -0.3789 8 7 2.8546 5.9617 -1.1313 9 6 3.5034 7.1159 -1.3828 10 8 3.0639 8.1639 -0.9580 11 6 4.7749 7.1048 -2.1916 12 7 5.2830 8.4767 -2.3242 13 6 4.3707 9.3008 -3.1303 14 6 4.9064 10.7336 -3.1929 15 8 6.2342 10.7180 -3.7241 16 6 7.1494 9.9252 -2.9631 17 6 6.6364 8.4842 -2.8983 18 6 3.3281 3.6803 -0.0013 19 6 4.0730 2.5215 -0.0008 20 6 3.4395 1.2846 0.0006 21 8 4.1775 0.1458 0.0005 22 6 5.5133 0.2822 0.1185 23 1 5.9441 1.2594 0.2795 24 6 6.3340 -0.8317 0.0331 25 7 5.8091 -2.0221 -0.1627 26 14 8.1852 -0.6425 0.1960 27 1 8.5084 -0.0596 1.5230 28 1 8.8318 -1.9734 0.0696 29 1 8.6871 0.2558 -0.8748 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 0.2150 2.3153 -0.0107 34 1 0.1001 4.8298 0.3110 35 1 3.2059 5.1238 -1.4711 36 1 5.5199 6.4881 -1.6890 37 1 4.5723 6.6955 -3.1813 38 1 4.3060 8.8921 -4.1387 39 1 3.3811 9.3019 -2.6732 40 1 4.9206 11.1610 -2.1902 41 1 4.2642 11.3353 -3.8360 42 1 7.2288 10.3290 -1.9538 43 1 8.1295 9.9415 -3.4398 44 1 7.3008 7.8892 -2.2717 45 1 6.6080 8.0617 -3.9026 46 1 3.8230 4.6402 -0.0017 47 1 5.1517 2.5743 -0.0016 48 1 6.3833 -2.8016 -0.2221 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059246452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:04 Heat of formation + Delta-G solvation = -37.811070 kcal Electronic energy + Delta-G solvation = -32208.504275 eV Core-core repulsion = 27653.502598 eV Total energy + Delta-G solvation = -4555.001678 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.167 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.33223 -39.89715 -39.05928 -37.79137 -37.44071 -35.71086 -35.09682 -32.66108 -32.19834 -31.40217 -29.92037 -29.49330 -28.78095 -26.79596 -25.69755 -25.34082 -24.26279 -22.97953 -21.97416 -21.00697 -20.56341 -20.26700 -18.31409 -17.99754 -17.52083 -16.91189 -16.55205 -16.28716 -15.83872 -15.69522 -15.54283 -15.33654 -15.28576 -14.91707 -14.82884 -14.56610 -14.27790 -14.08980 -13.79096 -13.71385 -13.52060 -13.44145 -12.78643 -12.68000 -12.42952 -12.25595 -11.92838 -11.83984 -11.69057 -11.59506 -11.45960 -11.38686 -11.09314 -11.06241 -10.83809 -10.64551 -10.61499 -10.15106 -10.06792 -9.77961 -9.65810 -9.13536 -8.70842 -8.58397 -8.13621 -7.11060 -6.70203 -4.23538 1.19219 1.88750 2.32601 2.60835 2.95359 2.98972 3.03539 3.06346 3.51127 3.66716 3.75190 3.80877 4.23904 4.47856 4.61740 4.71631 4.80073 4.85488 4.87757 4.89729 4.93881 4.95569 5.08603 5.14682 5.21313 5.29880 5.32469 5.39306 5.42868 5.43072 5.49792 5.52317 5.67764 5.71295 5.72398 5.79250 6.06035 6.20908 6.29030 6.49065 6.57769 6.62332 6.72563 6.88988 6.92938 7.00441 7.22480 7.29653 7.67244 7.69072 7.93656 8.51451 8.72580 9.39117 10.45342 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.008539 B = 0.002507 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.148263 B =11166.168697 C =14126.229665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.302 6.302 3 C 0.059 3.941 4 C -0.133 4.133 5 C -0.190 4.190 6 C 0.145 3.855 7 N -0.264 5.264 8 N -0.584 5.584 9 C 0.525 3.475 10 O -0.500 6.500 11 C 0.038 3.962 12 N -0.518 5.518 13 C 0.011 3.989 14 C 0.067 3.933 15 O -0.389 6.389 16 C 0.065 3.935 17 C 0.017 3.983 18 C -0.092 4.092 19 C -0.217 4.217 20 C 0.146 3.854 21 O -0.146 6.146 22 C -0.392 4.392 23 H 0.096 0.904 24 C 0.043 3.957 25 N -0.844 5.844 26 Si 0.944 3.056 27 H -0.267 1.267 28 H -0.275 1.275 29 H -0.267 1.267 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.127 0.873 34 H 0.174 0.826 35 H 0.395 0.605 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.119 0.881 47 H 0.138 0.862 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.922 14.108 -4.938 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.216 6.216 3 C 0.013 3.987 4 C -0.155 4.155 5 C -0.194 4.194 6 C -0.063 4.063 7 N -0.069 5.069 8 N -0.332 5.332 9 C 0.311 3.689 10 O -0.372 6.372 11 C -0.094 4.094 12 N -0.244 5.244 13 C -0.117 4.117 14 C -0.010 4.010 15 O -0.307 6.307 16 C -0.012 4.012 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.237 4.237 20 C 0.089 3.911 21 O -0.046 6.046 22 C -0.468 4.468 23 H 0.113 0.887 24 C -0.164 4.164 25 N -0.476 5.476 26 Si 0.768 3.232 27 H -0.192 1.192 28 H -0.200 1.200 29 H -0.192 1.192 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.145 0.855 34 H 0.191 0.809 35 H 0.239 0.761 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.136 0.864 47 H 0.156 0.844 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.019 15.505 -4.443 16.409 hybrid contribution 0.909 -1.798 -0.519 2.081 sum -2.111 13.707 -4.962 14.729 Atomic orbital electron populations 1.22935 0.80026 1.03220 1.00444 1.86249 1.19700 1.26138 1.89509 1.18103 0.89403 0.84685 1.06460 1.20796 0.98698 0.90683 1.05301 1.18714 0.92905 0.92508 1.15307 1.25186 0.98548 0.87766 0.94825 1.75167 0.98076 1.24536 1.09112 1.47457 1.25233 1.10397 1.50079 1.20343 0.84683 0.83060 0.80811 1.90656 1.66310 1.30407 1.49795 1.21966 0.95630 0.91877 0.99951 1.61830 1.02185 1.09484 1.50906 1.23004 0.98753 0.94279 0.95649 1.22651 0.83252 0.95354 0.99773 1.87968 1.19904 1.70095 1.52776 1.22642 0.92762 0.88993 0.96784 1.22851 0.90442 0.98930 0.98928 1.21165 0.92685 0.97890 0.99553 1.20808 1.00680 0.90583 1.11641 1.18847 0.88371 0.87655 0.96235 1.84037 1.19716 1.25562 1.75327 1.21428 0.78357 0.96083 1.50912 0.88655 1.25395 1.00859 0.94190 0.95995 1.70050 1.36732 0.98533 1.42254 0.85726 0.79701 0.78327 0.79456 1.19187 1.20004 1.19220 0.88905 0.93400 0.93307 0.85538 0.80949 0.76135 0.87109 0.91286 0.94311 0.87570 0.91956 0.88438 0.92083 0.88313 0.89195 0.93602 0.86358 0.84433 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.95 10.28 -34.19 -0.35 -6.30 16 3 C 0.06 1.16 6.70 -39.12 -0.26 0.90 16 4 C -0.13 -2.10 8.77 -39.03 -0.34 -2.44 16 5 C -0.19 -2.92 5.60 -105.02 -0.59 -3.51 16 6 C 0.14 1.95 11.20 -14.68 -0.16 1.78 16 7 N -0.26 -4.08 11.08 32.14 0.36 -3.72 16 8 N -0.58 -8.31 4.42 31.22 0.14 -8.17 16 9 C 0.53 7.49 7.65 -10.99 -0.08 7.40 16 10 O -0.50 -8.80 14.69 5.52 0.08 -8.72 16 11 C 0.04 0.41 5.45 -4.98 -0.03 0.38 16 12 N -0.52 -5.82 4.46 -235.76 -1.05 -6.87 16 13 C 0.01 0.12 5.29 -3.71 -0.02 0.10 16 14 C 0.07 0.67 7.01 37.21 0.26 0.93 16 15 O -0.39 -4.23 10.83 -35.23 -0.38 -4.61 16 16 C 0.07 0.57 7.01 37.21 0.26 0.83 16 17 C 0.02 0.15 5.64 -3.71 -0.02 0.13 16 18 C -0.09 -1.52 7.77 -39.16 -0.30 -1.82 16 19 C -0.22 -4.18 9.11 -39.49 -0.36 -4.54 16 20 C 0.15 3.26 6.67 -38.83 -0.26 3.01 16 21 O -0.15 -3.91 9.53 -14.27 -0.14 -4.05 16 22 C -0.39 -10.09 9.44 30.87 0.29 -9.80 16 23 H 0.10 2.21 5.26 -52.48 -0.28 1.93 16 24 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 25 N -0.84 -23.25 13.67 55.48 0.76 -22.49 16 26 Si 0.94 18.88 29.55 -169.99 -5.02 13.86 16 27 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 28 H -0.28 -5.42 7.11 56.52 0.40 -5.01 16 29 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 32 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 33 H 0.13 1.55 6.28 -52.49 -0.33 1.22 16 34 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.40 5.17 5.66 -182.60 -1.03 4.14 16 36 H 0.11 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 38 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.11 1.37 5.88 -51.93 -0.31 1.06 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.12 1.79 5.64 -52.49 -0.30 1.49 16 47 H 0.14 2.59 5.68 -52.48 -0.30 2.29 16 48 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 395.77 15.07 5.96 5.96 Total: -1.00 -33.53 395.77 -7.48 -41.00 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -7.11 Total: 8.38 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.72 Total: -4.28 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.20 Total: -41.25 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.79 Total: -23.68 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.53 -7.48 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059246452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.194 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds