Wall clock time and date at job start Tue Mar 31 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 120.00107 * 2 1 4 4 C 1.34779 * 120.00015 * 180.02562 * 2 1 3 5 5 O 1.21649 * 120.00117 * 4.85143 * 4 2 1 6 6 C 1.47124 * 119.99929 * 184.84321 * 4 2 1 7 7 C 1.43202 * 119.99290 * 103.07146 * 6 4 2 8 8 N 4.38647 * 138.08243 * 127.04988 * 2 1 3 9 9 C 1.37851 * 120.00310 * 283.34736 * 6 4 2 10 10 C 1.46385 * 119.99737 * 358.58845 * 9 6 4 11 11 C 1.40304 * 120.11407 * 143.71208 * 10 9 6 12 12 C 1.36485 * 120.01304 * 180.02562 * 11 10 9 13 13 C 1.39248 * 120.26415 * 359.95142 * 12 11 10 14 14 O 1.35512 * 119.88043 * 180.02562 * 13 12 11 15 15 C 1.34743 * 117.00042 * 5.52944 * 14 13 12 16 16 H 1.08001 * 120.00479 * 4.61699 * 15 14 13 17 17 C 1.38771 * 120.00144 * 184.60754 * 15 14 13 18 18 N 1.31477 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00142 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 60.00398 * 19 17 15 21 21 H 1.48509 * 109.46883 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47193 * 300.00203 * 19 17 15 23 23 C 1.39354 * 120.23833 * 0.02562 * 13 12 11 24 24 Br 1.89096 * 120.01125 * 180.02562 * 23 13 12 25 25 C 1.37619 * 119.97778 * 359.78402 * 23 13 12 26 26 H 1.09000 * 109.46816 * 269.99783 * 1 2 3 27 27 H 1.09008 * 109.46877 * 29.99493 * 1 2 3 28 28 H 1.08993 * 109.47087 * 149.99679 * 1 2 3 29 29 H 1.08991 * 109.47192 * 264.84955 * 3 2 1 30 30 H 1.08999 * 109.46944 * 24.85020 * 3 2 1 31 31 H 1.08999 * 109.46797 * 144.84900 * 3 2 1 32 32 H 1.07998 * 119.99761 * 178.58708 * 9 6 4 33 33 H 1.08005 * 119.99130 * 359.97438 * 11 10 9 34 34 H 1.08001 * 119.86729 * 179.97438 * 12 11 10 35 35 H 0.97008 * 119.99472 * 180.02562 * 18 17 15 36 36 H 1.08001 * 120.12988 * 180.25396 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5339 -2.2188 -0.0901 6 6 3.6062 -1.1695 0.1071 7 6 4.2322 -1.5024 1.3512 8 7 4.7290 -1.7656 2.3388 9 6 4.3782 -0.8457 -0.9882 10 6 3.7388 -0.5296 -2.2665 11 6 4.2828 0.4592 -3.1002 12 6 3.6847 0.7525 -4.2914 13 6 2.5348 0.0732 -4.6855 14 8 1.9477 0.3704 -5.8701 15 6 2.5884 1.2475 -6.6674 16 1 3.5615 1.6221 -6.3860 17 6 1.9980 1.6696 -7.8502 18 7 0.8132 1.2138 -8.1926 19 14 2.8865 2.8851 -8.9558 20 1 4.1825 2.3042 -9.3892 21 1 2.0498 3.1724 -10.1487 22 1 3.1336 4.1445 -8.2089 23 6 1.9857 -0.9112 -3.8661 24 35 0.4245 -1.8303 -4.4079 25 6 2.5829 -1.2177 -2.6647 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3633 -0.8899 -0.5139 29 1 2.4591 1.5373 -1.0234 30 1 1.5716 2.0497 0.4319 31 1 3.1069 1.1632 0.5917 32 1 5.4546 -0.8252 -0.9030 33 1 5.1744 0.9888 -2.7987 34 1 4.1051 1.5144 -4.9311 35 1 0.4007 1.5086 -9.0196 36 1 2.1618 -1.9831 -2.0296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059333928.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:10 Heat of formation + Delta-G solvation = 26.166769 kcal Electronic energy + Delta-G solvation = -23958.085708 eV Core-core repulsion = 20262.754945 eV Total energy + Delta-G solvation = -3695.330763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 364.021 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28108 -39.27448 -37.12301 -36.54148 -35.42964 -33.62390 -32.61639 -31.67978 -29.28066 -28.53683 -27.90248 -26.34721 -25.76132 -23.75802 -22.16019 -21.07862 -20.02710 -18.53140 -17.72267 -17.35269 -16.44434 -15.91880 -15.37581 -15.23889 -14.79073 -14.51055 -14.19909 -13.97261 -13.67996 -13.53477 -13.31411 -13.05813 -12.70213 -12.62079 -12.57566 -12.52690 -12.43601 -12.04884 -11.98264 -11.86118 -11.34847 -11.22696 -10.94061 -10.71316 -10.39161 -9.96803 -9.80302 -9.46536 -9.38030 -9.06261 -8.64390 -8.34043 -7.38624 -6.86582 -4.39358 0.60564 1.77641 2.07990 2.39618 2.48103 2.73997 2.91501 2.93093 2.96743 3.12737 3.41367 3.63989 4.04548 4.14041 4.58699 4.72628 4.77020 5.07815 5.11333 5.31177 5.36486 5.37018 5.41708 5.61855 5.73773 5.78850 5.85260 5.87404 5.92943 6.26227 6.38744 6.47177 6.53781 6.68410 6.86455 6.92467 7.29370 7.29897 7.53759 7.54033 8.15169 8.54508 9.17002 10.27069 Molecular weight = 364.02amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.003850 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.619451 B = 7270.308547 C = 8328.010095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.605 5.605 3 C 0.079 3.921 4 C 0.585 3.415 5 O -0.533 6.533 6 C -0.171 4.171 7 C 0.275 3.725 8 N -0.435 5.435 9 C 0.077 3.923 10 C -0.221 4.221 11 C -0.017 4.017 12 C -0.233 4.233 13 C 0.180 3.820 14 O -0.128 6.128 15 C -0.394 4.394 16 H 0.101 0.899 17 C 0.047 3.953 18 N -0.829 5.829 19 Si 0.947 3.053 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.265 1.265 23 C -0.169 4.169 24 Br -0.056 7.056 25 C -0.012 4.012 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.121 0.879 34 H 0.138 0.862 35 H 0.279 0.721 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 2.581 8.044 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.337 5.337 3 C -0.064 4.064 4 C 0.372 3.628 5 O -0.410 6.410 6 C -0.178 4.178 7 C -0.039 4.039 8 N -0.112 5.112 9 C 0.053 3.947 10 C -0.224 4.224 11 C -0.036 4.036 12 C -0.253 4.253 13 C 0.119 3.881 14 O -0.025 6.025 15 C -0.469 4.469 16 H 0.119 0.881 17 C -0.163 4.163 18 N -0.459 5.459 19 Si 0.770 3.230 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.190 1.190 23 C -0.250 4.250 24 Br 0.029 6.971 25 C -0.032 4.032 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.139 0.861 34 H 0.156 0.844 35 H 0.090 0.910 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.916 1.256 8.939 9.228 hybrid contribution 0.640 1.017 -0.879 1.489 sum 2.556 2.274 8.060 8.756 Atomic orbital electron populations 1.21692 0.78621 1.03974 1.01493 1.47551 1.07108 1.06186 1.72876 1.21850 0.97019 0.84673 1.02898 1.17608 0.86082 0.83656 0.75447 1.90826 1.69552 1.31093 1.49542 1.17704 0.92815 1.17864 0.89392 1.25169 0.93378 0.92956 0.92383 1.81235 1.08602 1.10704 1.10647 1.22709 0.98652 0.83886 0.89423 1.18176 1.00903 1.06440 0.96838 1.20696 0.96923 0.93939 0.91998 1.20760 0.99416 1.05890 0.99278 1.19225 0.91202 0.91700 0.86018 1.83978 1.44161 1.52667 1.21735 1.21582 1.02388 1.22298 1.00610 0.88133 1.25488 0.95999 0.97852 0.96950 1.70012 1.13679 1.38981 1.23178 0.85681 0.79082 0.79452 0.78821 1.19001 1.19873 1.19015 1.20542 1.00018 1.04837 0.99581 1.96574 1.33395 1.75300 1.91820 1.21480 0.91708 0.96672 0.93340 0.92863 0.90895 0.90001 0.91423 0.91028 0.91195 0.84435 0.86131 0.84415 0.91045 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.45 59.85 0.63 1.59 16 2 N -0.60 -7.65 3.24 -190.91 -0.62 -8.26 16 3 C 0.08 0.77 9.54 59.85 0.57 1.34 16 4 C 0.59 8.73 4.13 -12.65 -0.05 8.68 16 5 O -0.53 -9.65 15.10 5.23 0.08 -9.57 16 6 C -0.17 -2.24 3.94 -104.51 -0.41 -2.65 16 7 C 0.27 3.84 15.36 -22.46 -0.34 3.50 16 8 N -0.44 -6.75 18.54 41.85 0.78 -5.97 16 9 C 0.08 0.88 9.22 -36.45 -0.34 0.55 16 10 C -0.22 -3.12 4.46 -105.07 -0.47 -3.59 16 11 C -0.02 -0.23 9.74 -39.44 -0.38 -0.61 16 12 C -0.23 -4.05 9.06 -39.84 -0.36 -4.41 16 13 C 0.18 3.75 6.65 -38.79 -0.26 3.49 16 14 O -0.13 -3.16 9.07 1.03 0.01 -3.15 16 15 C -0.39 -9.43 9.45 30.93 0.29 -9.14 16 16 H 0.10 2.15 5.25 -52.49 -0.28 1.87 16 17 C 0.05 1.12 5.50 -17.51 -0.10 1.02 16 18 N -0.83 -21.51 13.67 55.49 0.76 -20.75 16 19 Si 0.95 17.72 29.55 -169.99 -5.02 12.69 16 20 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 22 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 23 C -0.17 -3.30 6.23 -39.39 -0.25 -3.55 16 24 Br -0.06 -1.10 33.15 -68.01 -2.25 -3.35 16 25 C -0.01 -0.20 8.03 -39.04 -0.31 -0.52 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.72 8.07 -51.92 -0.42 0.30 16 28 H 0.08 1.09 7.36 -51.93 -0.38 0.70 16 29 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 30 H 0.07 0.55 8.03 -51.93 -0.42 0.14 16 31 H 0.07 0.62 6.99 -51.93 -0.36 0.25 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.14 2.32 5.67 -52.49 -0.30 2.03 16 35 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.14 2.54 4.98 -52.49 -0.26 2.27 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -29.03 341.83 -6.11 -35.15 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.21 Total: 2.35 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.78 Total: -4.29 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.92 Total: -34.99 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.02 Total: 12.69 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -2.25 Total: -3.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.03 -6.11 -35.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059333928.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.314 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds