Wall clock time and date at job start Tue Mar 31 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.46983 * 2 1 4 4 C 1.35953 * 116.99986 * 179.97438 * 3 2 1 5 5 C 1.37969 * 119.98473 * 359.73080 * 4 3 2 6 6 C 1.40254 * 119.84042 * 179.73422 * 5 4 3 7 7 C 1.46392 * 120.09497 * 180.29145 * 6 5 4 8 8 C 1.37861 * 119.99767 * 145.78173 * 7 6 5 9 9 C 1.43198 * 119.99502 * 172.99390 * 8 7 6 10 10 N 8.21398 * 162.68586 * 190.80204 * 2 1 3 11 11 C 1.47115 * 120.00106 * 352.98908 * 8 7 6 12 12 O 1.21653 * 119.99740 * 103.59868 * 11 8 7 13 13 N 1.34772 * 120.00131 * 283.59669 * 11 8 7 14 14 C 1.46504 * 119.99733 * 175.05851 * 13 11 8 15 15 C 1.46499 * 120.00287 * 355.05629 * 13 11 8 16 16 C 1.40306 * 119.81103 * 0.51140 * 6 5 4 17 17 C 1.37629 * 119.96277 * 359.75504 * 16 6 5 18 18 Cl 1.73601 * 119.91950 * 180.02562 * 17 16 6 19 19 C 1.39265 * 120.15790 * 0.02562 * 17 16 6 20 20 O 1.35557 * 119.90249 * 179.97438 * 19 17 16 21 21 C 1.34730 * 116.99898 * 269.98025 * 20 19 17 22 22 H 1.07999 * 119.99981 * 359.97438 * 21 20 19 23 23 C 1.38762 * 119.99787 * 180.02562 * 21 20 19 24 24 N 1.31482 * 119.99620 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00079 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47335 * 90.00196 * 25 23 21 27 27 H 1.48501 * 109.47243 * 210.00399 * 25 23 21 28 28 H 1.48502 * 109.47287 * 329.99881 * 25 23 21 29 29 H 1.08999 * 109.47543 * 299.99980 * 1 2 3 30 30 H 1.09004 * 109.47437 * 60.00170 * 1 2 3 31 31 H 1.09002 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47543 * 240.00020 * 2 1 3 33 33 H 1.08999 * 109.46993 * 119.99791 * 2 1 3 34 34 H 1.07997 * 120.08000 * 359.97025 * 5 4 3 35 35 H 1.07995 * 119.99648 * 325.77719 * 7 6 5 36 36 H 1.09005 * 109.46849 * 90.00113 * 14 13 11 37 37 H 1.09001 * 109.47011 * 209.99627 * 14 13 11 38 38 H 1.08998 * 109.47148 * 330.00048 * 14 13 11 39 39 H 1.09005 * 109.47034 * 94.10851 * 15 13 11 40 40 H 1.09000 * 109.47199 * 214.10545 * 15 13 11 41 41 H 1.08994 * 109.46757 * 334.11291 * 15 13 11 42 42 H 1.07997 * 120.01870 * 179.73492 * 16 6 5 43 43 H 0.96998 * 120.00004 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3540 1.5254 0.0005 5 6 4.1942 0.4311 0.0067 6 6 5.5842 0.6183 0.0016 7 6 6.4808 -0.5389 0.0016 8 6 7.6811 -0.4808 -0.6740 9 6 8.6239 -1.5517 -0.5518 10 7 9.3717 -2.4012 -0.4582 11 6 7.9934 0.6812 -1.5204 12 8 8.7702 1.5301 -1.1255 13 7 7.4189 0.8054 -2.7332 14 6 7.6446 2.0136 -3.5304 15 6 6.5688 -0.2679 -3.2544 16 6 6.1129 1.9180 0.0011 17 6 5.2675 3.0040 0.0006 18 17 5.9229 4.6115 -0.0006 19 6 3.8876 2.8164 0.0010 20 8 3.0597 3.8898 0.0010 21 6 2.6861 4.3741 1.2015 22 1 3.0450 3.9081 2.1072 23 6 1.8394 5.4710 1.2741 24 7 1.4744 5.9433 2.4456 25 14 1.2180 6.2766 -0.2925 26 1 -0.0550 5.6346 -0.7080 27 1 0.9861 7.7227 -0.0472 28 1 2.2290 6.1129 -1.3679 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7826 -0.5674 0.0115 35 1 6.2019 -1.4380 0.5309 36 1 8.5218 1.8735 -4.1621 37 1 6.7728 2.2040 -4.1563 38 1 7.8072 2.8622 -2.8659 39 1 5.5273 -0.0565 -3.0122 40 1 6.6847 -0.3302 -4.3364 41 1 6.8619 -1.2154 -2.8023 42 1 7.1827 2.0660 0.0015 43 1 0.8828 6.7103 2.4964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059334657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:22 Heat of formation + Delta-G solvation = -11.782131 kcal Electronic energy + Delta-G solvation = -30788.499340 eV Core-core repulsion = 26441.783770 eV Total energy + Delta-G solvation = -4346.715570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.68576 -39.89458 -37.85485 -37.15457 -36.71469 -35.88109 -35.72787 -33.66867 -32.04804 -31.63359 -30.08820 -29.05456 -28.15187 -26.54196 -25.30043 -24.08456 -23.58037 -21.67771 -21.36447 -20.53367 -18.18577 -18.10933 -17.81515 -16.94642 -16.70056 -16.40533 -15.95112 -15.78828 -15.49534 -14.89681 -14.66680 -14.22896 -14.09359 -13.87140 -13.71257 -13.46001 -13.31278 -13.14404 -12.89416 -12.82716 -12.72425 -12.59458 -12.55529 -12.40835 -12.24612 -12.19126 -12.08374 -11.83181 -11.28376 -11.19008 -10.99727 -10.73989 -10.51618 -10.32449 -10.25535 -10.17029 -9.66744 -9.50399 -8.92582 -8.39744 -8.32894 -7.72741 -6.11558 -3.84838 0.10336 1.37928 1.62650 2.08385 2.40565 2.52643 2.81519 3.07162 3.36203 3.38897 3.44136 3.55096 3.64664 3.69398 4.20814 4.46027 4.58795 4.73063 4.80960 4.95042 4.95821 5.03124 5.08342 5.11586 5.13459 5.17535 5.25033 5.38073 5.39857 5.44104 5.45666 5.52416 5.66897 5.73807 5.85721 5.90648 6.09559 6.15890 6.18968 6.25395 6.41907 6.58556 6.99027 7.20294 7.55526 7.83461 7.84676 8.24712 9.23592 9.76189 10.99472 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.003791 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.502252 B = 7384.612528 C = 8700.979156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.284 6.284 4 C 0.109 3.891 5 C -0.167 4.167 6 C -0.089 4.089 7 C 0.051 3.949 8 C -0.126 4.126 9 C 0.266 3.734 10 N -0.412 5.412 11 C 0.577 3.423 12 O -0.522 6.522 13 N -0.605 5.605 14 C 0.085 3.915 15 C 0.076 3.924 16 C -0.113 4.113 17 C -0.034 4.034 18 Cl -0.039 7.039 19 C 0.160 3.840 20 O -0.252 6.252 21 C -0.357 4.357 22 H 0.085 0.915 23 C 0.061 3.939 24 N -0.900 5.900 25 Si 0.897 3.103 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.261 1.261 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.153 0.847 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -15.297 -10.752 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.197 6.197 4 C 0.062 3.938 5 C -0.186 4.186 6 C -0.090 4.090 7 C 0.028 3.972 8 C -0.133 4.133 9 C -0.049 4.049 10 N -0.088 5.088 11 C 0.363 3.637 12 O -0.398 6.398 13 N -0.337 5.337 14 C -0.057 4.057 15 C -0.067 4.067 16 C -0.132 4.132 17 C -0.062 4.062 18 Cl -0.010 7.010 19 C 0.112 3.888 20 O -0.164 6.164 21 C -0.432 4.432 22 H 0.103 0.897 23 C -0.139 4.139 24 N -0.543 5.543 25 Si 0.724 3.276 26 H -0.204 1.204 27 H -0.214 1.214 28 H -0.185 1.185 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.170 0.830 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.732 -15.598 -10.533 19.674 hybrid contribution -0.585 0.519 -0.467 0.911 sum 5.147 -15.079 -10.999 19.361 Atomic orbital electron populations 1.21745 0.92796 1.02232 1.04129 1.22792 0.96237 0.82716 1.00690 1.86366 1.17468 1.27843 1.87978 1.19298 0.83417 0.92871 0.98183 1.21221 0.92192 0.98172 1.06986 1.18248 0.92200 0.91559 1.06999 1.22813 0.88383 0.96472 0.89572 1.17945 0.94149 0.93741 1.07455 1.25038 0.93311 0.92578 0.93963 1.81248 1.08533 1.10602 1.08442 1.17627 0.80163 0.85089 0.80839 1.90863 1.34480 1.42316 1.72177 1.47567 1.49100 1.19957 1.17117 1.21732 1.01364 0.86938 0.95686 1.21871 0.94972 0.89874 0.99980 1.21669 1.01227 0.89857 1.00414 1.21071 0.92119 0.87660 1.05353 1.98374 1.84925 1.21121 1.96580 1.18215 0.88018 0.86642 0.95949 1.83437 1.61607 1.40572 1.30812 1.20277 1.28889 1.13376 0.80668 0.89702 1.24189 0.96391 0.95982 0.97290 1.69609 1.36227 1.25658 1.22834 0.86299 0.79671 0.77891 0.83738 1.20431 1.21393 1.18521 0.91080 0.91496 0.90793 0.92478 0.92266 0.84540 0.83246 0.92489 0.90687 0.89914 0.91700 0.90731 0.90913 0.82963 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 37.16 0.38 -1.23 16 2 C 0.05 0.59 5.46 37.16 0.20 0.79 16 3 O -0.28 -5.00 9.92 -34.22 -0.34 -5.34 16 4 C 0.11 1.89 6.70 -39.14 -0.26 1.62 16 5 C -0.17 -2.08 8.78 -38.92 -0.34 -2.42 16 6 C -0.09 -1.10 5.51 -105.08 -0.58 -1.68 16 7 C 0.05 0.46 9.42 -36.44 -0.34 0.12 16 8 C -0.13 -1.34 3.71 -104.51 -0.39 -1.73 16 9 C 0.27 3.07 15.36 -22.49 -0.35 2.73 16 10 N -0.41 -5.48 18.54 41.82 0.78 -4.71 16 11 C 0.58 7.23 4.31 -12.66 -0.05 7.18 16 12 O -0.52 -8.31 14.99 5.23 0.08 -8.23 16 13 N -0.60 -6.14 3.27 -190.91 -0.63 -6.76 16 14 C 0.08 0.80 10.42 59.85 0.62 1.42 16 15 C 0.08 0.52 10.14 59.85 0.61 1.13 16 16 C -0.11 -1.74 8.09 -39.03 -0.32 -2.06 16 17 C -0.03 -0.64 6.32 -39.42 -0.25 -0.89 16 18 Cl -0.04 -0.77 28.49 -51.86 -1.48 -2.24 16 19 C 0.16 3.31 5.61 -38.66 -0.22 3.09 16 20 O -0.25 -6.33 7.72 -13.71 -0.11 -6.43 16 21 C -0.36 -9.95 10.28 30.93 0.32 -9.63 16 22 H 0.09 2.53 7.99 -52.49 -0.42 2.11 16 23 C 0.06 1.73 5.49 -17.51 -0.10 1.64 16 24 N -0.90 -26.77 13.96 55.48 0.77 -26.00 16 25 Si 0.90 22.30 28.62 -169.99 -4.86 17.44 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.26 -6.47 7.11 56.52 0.40 -6.06 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.06 0.60 7.64 -51.93 -0.40 0.20 16 34 H 0.14 1.19 6.28 -52.49 -0.33 0.86 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.08 0.94 7.49 -51.93 -0.39 0.55 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 41 H 0.07 0.44 6.83 -51.93 -0.35 0.08 16 42 H 0.15 2.42 4.92 -52.49 -0.26 2.16 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -34.52 394.76 -5.95 -40.47 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -5.06 Total: -4.23 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.06 Total: 0.08 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.92 Total: -37.47 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.37 Total: -20.00 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.86 Total: 17.44 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.52 -5.95 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059334657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.689 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds