Wall clock time and date at job start Tue Mar 31 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.46983 * 2 1 4 4 C 1.35953 * 116.99986 * 179.97438 * 3 2 1 5 5 C 1.37969 * 119.98473 * 359.73080 * 4 3 2 6 6 C 1.40254 * 119.84042 * 179.73422 * 5 4 3 7 7 C 1.46392 * 120.09497 * 180.29145 * 6 5 4 8 8 C 1.37861 * 119.99767 * 145.78173 * 7 6 5 9 9 C 1.43198 * 119.99502 * 172.99390 * 8 7 6 10 10 N 8.21398 * 162.68586 * 190.80204 * 2 1 3 11 11 C 1.47115 * 120.00106 * 352.98908 * 8 7 6 12 12 O 1.21653 * 119.99740 * 103.59868 * 11 8 7 13 13 N 1.34772 * 120.00131 * 283.59669 * 11 8 7 14 14 C 1.46504 * 119.99733 * 175.05851 * 13 11 8 15 15 C 1.46499 * 120.00287 * 355.05629 * 13 11 8 16 16 C 1.40306 * 119.81103 * 0.51140 * 6 5 4 17 17 C 1.37629 * 119.96277 * 359.75504 * 16 6 5 18 18 Cl 1.73601 * 119.91950 * 180.02562 * 17 16 6 19 19 C 1.39265 * 120.15790 * 0.02562 * 17 16 6 20 20 O 1.35557 * 119.90249 * 179.97438 * 19 17 16 21 21 C 1.34730 * 116.99898 * 269.98025 * 20 19 17 22 22 H 1.07999 * 119.99981 * 359.97438 * 21 20 19 23 23 C 1.38762 * 119.99787 * 180.02562 * 21 20 19 24 24 N 1.31482 * 119.99620 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00079 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47335 * 90.00196 * 25 23 21 27 27 H 1.48501 * 109.47243 * 210.00399 * 25 23 21 28 28 H 1.48502 * 109.47287 * 329.99881 * 25 23 21 29 29 H 1.08999 * 109.47543 * 299.99980 * 1 2 3 30 30 H 1.09004 * 109.47437 * 60.00170 * 1 2 3 31 31 H 1.09002 * 109.47334 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47543 * 240.00020 * 2 1 3 33 33 H 1.08999 * 109.46993 * 119.99791 * 2 1 3 34 34 H 1.07997 * 120.08000 * 359.97025 * 5 4 3 35 35 H 1.07995 * 119.99648 * 325.77719 * 7 6 5 36 36 H 1.09005 * 109.46849 * 90.00113 * 14 13 11 37 37 H 1.09001 * 109.47011 * 209.99627 * 14 13 11 38 38 H 1.08998 * 109.47148 * 330.00048 * 14 13 11 39 39 H 1.09005 * 109.47034 * 94.10851 * 15 13 11 40 40 H 1.09000 * 109.47199 * 214.10545 * 15 13 11 41 41 H 1.08994 * 109.46757 * 334.11291 * 15 13 11 42 42 H 1.07997 * 120.01870 * 179.73492 * 16 6 5 43 43 H 0.96998 * 120.00004 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3540 1.5254 0.0005 5 6 4.1942 0.4311 0.0067 6 6 5.5842 0.6183 0.0016 7 6 6.4808 -0.5389 0.0016 8 6 7.6811 -0.4808 -0.6740 9 6 8.6239 -1.5517 -0.5518 10 7 9.3717 -2.4012 -0.4582 11 6 7.9934 0.6812 -1.5204 12 8 8.7702 1.5301 -1.1255 13 7 7.4189 0.8054 -2.7332 14 6 7.6446 2.0136 -3.5304 15 6 6.5688 -0.2679 -3.2544 16 6 6.1129 1.9180 0.0011 17 6 5.2675 3.0040 0.0006 18 17 5.9229 4.6115 -0.0006 19 6 3.8876 2.8164 0.0010 20 8 3.0597 3.8898 0.0010 21 6 2.6861 4.3741 1.2015 22 1 3.0450 3.9081 2.1072 23 6 1.8394 5.4710 1.2741 24 7 1.4744 5.9433 2.4456 25 14 1.2180 6.2766 -0.2925 26 1 -0.0550 5.6346 -0.7080 27 1 0.9861 7.7227 -0.0472 28 1 2.2290 6.1129 -1.3679 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7826 -0.5674 0.0115 35 1 6.2019 -1.4380 0.5309 36 1 8.5218 1.8735 -4.1621 37 1 6.7728 2.2040 -4.1563 38 1 7.8072 2.8622 -2.8659 39 1 5.5273 -0.0565 -3.0122 40 1 6.6847 -0.3302 -4.3364 41 1 6.8619 -1.2154 -2.8023 42 1 7.1827 2.0660 0.0015 43 1 0.8828 6.7103 2.4964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059334657.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:21 Heat of formation + Delta-G solvation = -33.722848 kcal Electronic energy + Delta-G solvation = -30789.450761 eV Core-core repulsion = 26441.783770 eV Total energy + Delta-G solvation = -4347.666991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.77429 -41.02534 -39.25237 -38.40425 -37.85636 -37.28761 -36.60459 -34.80331 -34.06326 -32.57758 -31.31418 -30.22840 -28.89685 -27.49246 -26.87220 -25.29510 -24.74057 -22.73868 -22.48490 -21.52687 -20.05535 -19.24745 -18.95038 -18.42257 -17.69843 -17.55003 -16.98977 -16.80296 -16.56338 -16.24921 -15.96401 -15.44208 -15.14187 -15.11167 -14.79545 -14.72186 -14.47621 -14.13935 -14.08090 -13.99030 -13.83488 -13.63310 -13.54828 -13.40953 -13.37415 -13.30352 -13.14305 -12.92884 -12.78358 -12.41497 -12.32250 -12.22798 -11.94159 -11.77233 -11.70247 -11.59977 -11.26089 -10.61467 -10.50915 -9.73365 -9.54398 -9.03819 -8.28048 -6.00492 -0.88850 0.13684 0.48337 1.12469 1.17308 1.36486 1.39413 1.49907 1.57232 2.00336 2.13814 2.34120 2.41314 2.44724 2.76115 3.06320 3.33440 3.42610 3.68205 3.93263 4.00868 4.07616 4.17077 4.21409 4.29450 4.37131 4.39375 4.46710 4.52943 4.56509 4.69984 4.80367 4.87575 4.89057 4.95565 4.96841 5.02268 5.09895 5.16644 5.32821 5.38290 5.43062 5.59784 6.13275 6.18111 6.32027 6.51830 6.94272 7.08589 7.81340 8.87138 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.010760 B = 0.003791 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.502252 B = 7384.612528 C = 8700.979156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.038 3.962 3 O -0.324 6.324 4 C 0.108 3.892 5 C -0.138 4.138 6 C -0.061 4.061 7 C 0.073 3.927 8 C -0.120 4.120 9 C 0.287 3.713 10 N -0.441 5.441 11 C 0.564 3.436 12 O -0.567 6.567 13 N -0.602 5.602 14 C 0.081 3.919 15 C 0.067 3.933 16 C -0.121 4.121 17 C -0.040 4.040 18 Cl -0.064 7.064 19 C 0.092 3.908 20 O -0.269 6.269 21 C -0.336 4.336 22 H 0.048 0.952 23 C 0.004 3.996 24 N -0.944 5.944 25 Si 0.957 3.043 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.264 1.264 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.192 0.808 35 H 0.204 0.796 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.148 0.852 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -19.472 -12.423 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 O -0.238 6.238 4 C 0.061 3.939 5 C -0.156 4.156 6 C -0.062 4.062 7 C 0.050 3.950 8 C -0.127 4.127 9 C -0.027 4.027 10 N -0.117 5.117 11 C 0.351 3.649 12 O -0.448 6.448 13 N -0.333 5.333 14 C -0.061 4.061 15 C -0.075 4.075 16 C -0.140 4.140 17 C -0.067 4.067 18 Cl -0.035 7.035 19 C 0.045 3.955 20 O -0.182 6.182 21 C -0.412 4.412 22 H 0.066 0.934 23 C -0.191 4.191 24 N -0.590 5.590 25 Si 0.782 3.218 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.209 0.791 35 H 0.220 0.780 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.165 0.835 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.362 -19.822 -12.246 23.909 hybrid contribution -0.356 1.560 0.003 1.601 sum 5.006 -18.262 -12.243 22.549 Atomic orbital electron populations 1.21816 0.92633 1.04139 1.02371 1.23258 0.96536 0.80469 1.03335 1.86326 1.17679 1.31818 1.87973 1.19279 0.84222 0.92541 0.97850 1.21634 0.91266 0.99060 1.03674 1.18530 0.92931 0.91277 1.03453 1.23093 0.86592 0.96513 0.88776 1.17781 0.94422 0.92724 1.07745 1.24920 0.92757 0.91988 0.93056 1.81291 1.09196 1.11731 1.09502 1.18050 0.80007 0.85234 0.81633 1.90850 1.36616 1.44021 1.73266 1.47770 1.48509 1.20647 1.16390 1.21790 1.02887 0.86062 0.95326 1.22166 0.94573 0.89204 1.01514 1.21690 1.00584 0.90486 1.01266 1.21162 0.91992 0.87390 1.06170 1.98353 1.85124 1.23273 1.96770 1.18655 0.88199 0.87042 1.01576 1.83416 1.62861 1.42795 1.29126 1.20062 1.27495 1.12559 0.81097 0.93427 1.24934 0.97166 0.96882 1.00111 1.69715 1.37806 1.26740 1.24728 0.85383 0.79123 0.77323 0.80005 1.19520 1.20461 1.18816 0.93588 0.92552 0.86977 0.88854 0.90156 0.79110 0.77963 0.91258 0.88727 0.92673 0.91059 0.88583 0.89525 0.83451 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 10.28 71.98 0.74 -2.12 16 2 C 0.04 0.73 5.46 71.98 0.39 1.13 16 3 O -0.32 -10.96 9.92 -79.03 -0.78 -11.75 16 4 C 0.11 3.55 6.70 22.56 0.15 3.70 16 5 C -0.14 -2.81 8.78 22.70 0.20 -2.61 16 6 C -0.06 -1.27 5.51 -20.16 -0.11 -1.38 16 7 C 0.07 0.93 9.42 24.30 0.23 1.16 16 8 C -0.12 -2.11 3.71 -19.79 -0.07 -2.18 16 9 C 0.29 5.65 15.36 88.34 1.36 7.01 16 10 N -0.44 -10.50 18.54 19.00 0.35 -10.15 16 11 C 0.56 13.14 4.31 86.57 0.37 13.51 16 12 O -0.57 -18.08 14.99 -4.20 -0.06 -18.15 16 13 N -0.60 -10.89 3.27 -876.16 -2.87 -13.76 16 14 C 0.08 1.45 10.42 127.77 1.33 2.79 16 15 C 0.07 0.65 10.14 127.77 1.30 1.94 16 16 C -0.12 -3.63 8.09 22.63 0.18 -3.45 16 17 C -0.04 -1.52 6.32 22.37 0.14 -1.38 16 18 Cl -0.06 -2.65 28.49 -2.72 -0.08 -2.73 16 19 C 0.09 3.87 5.61 22.87 0.13 4.00 16 20 O -0.27 -14.02 7.72 -5.61 -0.04 -14.06 16 21 C -0.34 -19.63 10.28 67.95 0.70 -18.93 16 22 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 23 C 0.00 0.21 5.49 84.87 0.47 0.68 16 24 N -0.94 -58.42 13.96 21.63 0.30 -58.12 16 25 Si 0.96 47.38 28.62 68.60 1.96 49.34 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.13 7.67 -2.39 -0.02 1.11 16 33 H 0.08 1.21 7.64 -2.39 -0.02 1.19 16 34 H 0.19 1.83 6.28 -2.91 -0.02 1.81 16 35 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 1.28 8.07 -2.39 -0.02 1.27 16 38 H 0.05 1.31 7.49 -2.39 -0.02 1.29 16 39 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.10 0.56 8.10 -2.39 -0.02 0.54 16 41 H 0.09 0.62 6.83 -2.39 -0.02 0.60 16 42 H 0.15 4.68 4.92 -2.91 -0.01 4.67 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -83.52 394.76 7.35 -76.17 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: 1.06 Total: -0.65 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 7.50 Total: 3.85 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -2.21 Total: -82.02 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.89 Total: -43.96 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.96 Total: 49.34 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.08 Total: -2.73 kcal Total: -83.52 7.35 -76.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059334657.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.448 kcal (2) G-P(sol) polarization free energy of solvation -83.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds