Wall clock time and date at job start Tue Mar 31 2020 06:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38284 * 119.92490 * 2 1 4 4 C 1.38103 * 120.07022 * 179.97438 * 3 2 1 5 5 C 1.38900 * 119.92677 * 0.02728 * 4 3 2 6 6 N 1.39847 * 120.07140 * 179.97438 * 5 4 3 7 7 N 1.39471 * 124.69840 * 0.02562 * 6 5 4 8 8 C 1.34647 * 110.59757 * 179.70123 * 7 6 5 9 9 O 1.21648 * 126.57295 * 180.28183 * 8 7 6 10 10 C 1.47572 * 106.85764 * 0.45008 * 8 7 6 11 11 C 1.38010 * 127.46573 * 179.83279 * 10 8 7 12 12 C 1.46231 * 119.99634 * 352.37552 * 11 10 8 13 13 C 1.40253 * 120.26155 * 322.85412 * 12 11 10 14 14 C 1.37608 * 119.86967 * 180.29752 * 13 12 11 15 15 C 1.38740 * 120.39226 * 359.69650 * 14 13 12 16 16 C 1.38024 * 120.52573 * 0.02625 * 15 14 13 17 17 C 1.38796 * 120.11992 * 359.97438 * 16 15 14 18 18 O 1.35418 * 120.19645 * 179.97438 * 17 16 15 19 19 C 1.34730 * 117.00255 * 5.58948 * 18 17 16 20 20 H 1.07998 * 120.00112 * 354.92912 * 19 18 17 21 21 C 1.38794 * 120.00052 * 174.64461 * 19 18 17 22 22 N 1.31458 * 119.99901 * 180.27700 * 21 19 18 23 23 Si 1.86797 * 119.99833 * 0.28188 * 21 19 18 24 24 H 1.48501 * 109.47016 * 89.99511 * 23 21 19 25 25 H 1.48500 * 109.46939 * 209.99279 * 23 21 19 26 26 H 1.48498 * 109.47202 * 329.99747 * 23 21 19 27 27 C 1.34649 * 124.69677 * 179.97438 * 6 5 4 28 28 O 1.21659 * 126.56327 * 0.04743 * 27 6 5 29 29 C 1.38890 * 119.85562 * 0.25500 * 5 4 3 30 30 C 1.38105 * 119.92375 * 359.44311 * 29 5 4 31 31 H 1.08998 * 109.46938 * 89.99771 * 1 2 3 32 32 H 1.09000 * 109.47285 * 209.99650 * 1 2 3 33 33 H 1.09000 * 109.47284 * 329.99674 * 1 2 3 34 34 H 1.08001 * 119.96877 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.04244 * 180.02562 * 4 3 2 36 36 H 0.97001 * 124.69554 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.99811 * 172.38542 * 11 10 8 38 38 H 1.08000 * 120.06467 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.80387 * 179.71990 * 14 13 12 40 40 H 1.08004 * 119.73511 * 180.02562 * 15 14 13 41 41 H 1.08001 * 119.93832 * 179.97438 * 16 15 14 42 42 H 0.96999 * 119.99842 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.03925 * 179.72267 * 29 5 4 44 44 H 1.08001 * 119.96201 * 180.32675 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2739 -0.0001 0.0005 6 7 5.6724 0.0000 0.0005 7 7 6.4663 1.1467 0.0010 8 6 7.7722 0.8186 0.0075 9 8 8.7132 1.5896 0.0144 10 6 7.8433 -0.6554 0.0003 11 6 8.9778 -1.4412 0.0002 12 6 10.2941 -0.8247 -0.1605 13 6 10.4626 0.2669 -1.0248 14 6 11.7060 0.8370 -1.1745 15 6 12.7943 0.3423 -0.4704 16 6 12.6458 -0.7276 0.3888 17 6 11.4014 -1.3190 0.5562 18 8 11.2541 -2.3691 1.3984 19 6 12.3280 -2.7200 2.1324 20 1 13.2748 -2.2249 1.9749 21 6 12.2162 -3.7136 3.0950 22 7 13.2627 -4.0521 3.8149 23 14 10.5785 -4.5698 3.3675 24 1 10.4897 -5.7606 2.4847 25 1 10.4729 -4.9963 4.7860 26 1 9.4711 -3.6333 3.0483 27 6 6.4389 -1.1071 0.0010 28 8 6.0480 -2.2592 0.0006 29 6 3.5780 -1.2020 -0.0054 30 6 2.1970 -1.1985 0.0004 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6552 2.1328 0.0004 35 1 4.1162 2.1382 0.0010 36 1 6.1249 2.0546 0.0018 37 1 8.8935 -2.5113 0.1185 38 1 9.6189 0.6566 -1.5751 39 1 11.8355 1.6747 -1.8438 40 1 13.7654 0.7981 -0.5957 41 1 13.4996 -1.1053 0.9319 42 1 13.1846 -4.7468 4.4873 43 1 4.1161 -2.1383 -0.0100 44 1 1.6552 -2.1328 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059475171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:01 Heat of formation + Delta-G solvation = 43.310973 kcal Electronic energy + Delta-G solvation = -31261.510335 eV Core-core repulsion = 26919.616631 eV Total energy + Delta-G solvation = -4341.893704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82882 -39.67141 -39.28350 -38.29741 -37.01831 -36.49532 -33.95439 -33.11536 -32.66174 -31.32360 -30.38098 -29.69687 -29.35427 -26.94599 -25.55613 -25.04657 -23.26215 -22.19408 -21.84566 -21.40359 -20.64330 -19.72728 -18.69824 -18.13481 -17.47184 -16.70188 -16.37239 -16.16229 -15.71201 -15.38669 -15.09188 -14.99899 -14.79556 -14.42610 -14.29486 -14.17967 -14.07828 -13.96150 -13.77841 -13.67480 -13.46693 -12.86186 -12.68354 -12.58873 -12.53794 -12.37904 -12.00438 -11.71172 -11.55086 -11.41812 -11.10858 -10.99534 -10.85826 -10.41741 -10.36832 -9.81191 -9.72505 -9.53257 -9.47488 -9.24594 -9.10101 -8.08771 -7.84288 -7.51701 -6.69231 -4.32139 0.41904 0.99500 1.11937 1.47206 2.11444 2.20383 2.61616 3.11135 3.14264 3.27992 3.33316 3.47606 3.57669 4.03682 4.23704 4.32656 4.47181 4.53974 4.59738 4.73328 4.82839 4.87808 4.97914 5.08744 5.19502 5.23360 5.31064 5.44971 5.55318 5.56234 5.58237 5.70008 5.82482 5.87387 5.93870 6.05987 6.09746 6.10218 6.27984 6.35132 6.36081 6.53711 6.57448 6.83431 6.92822 6.98935 7.12143 7.22712 7.37677 7.54150 7.75323 7.82826 8.10507 8.62773 9.20479 10.36055 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.011530 B = 0.002729 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.844290 B =10256.947997 C =12259.049300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.116 4.116 3 C -0.088 4.088 4 C -0.158 4.158 5 C 0.167 3.833 6 N -0.360 5.360 7 N -0.526 5.526 8 C 0.573 3.427 9 O -0.490 6.490 10 C -0.353 4.353 11 C 0.175 3.825 12 C -0.210 4.210 13 C 0.015 3.985 14 C -0.218 4.218 15 C -0.039 4.039 16 C -0.231 4.231 17 C 0.195 3.805 18 O -0.193 6.193 19 C -0.390 4.390 20 H 0.114 0.886 21 C 0.070 3.930 22 N -0.859 5.859 23 Si 0.900 3.100 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.255 1.255 27 C 0.574 3.426 28 O -0.497 6.497 29 C -0.146 4.146 30 C -0.085 4.085 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.430 0.570 37 H 0.145 0.855 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.139 0.861 42 H 0.285 0.715 43 H 0.159 0.841 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.784 9.348 -8.617 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.107 4.107 4 C -0.179 4.179 5 C 0.074 3.926 6 N -0.175 5.175 7 N -0.282 5.282 8 C 0.364 3.636 9 O -0.363 6.363 10 C -0.360 4.360 11 C 0.154 3.846 12 C -0.211 4.211 13 C -0.003 4.003 14 C -0.237 4.237 15 C -0.058 4.058 16 C -0.250 4.250 17 C 0.139 3.861 18 O -0.095 6.095 19 C -0.464 4.464 20 H 0.131 0.869 21 C -0.137 4.137 22 N -0.493 5.493 23 Si 0.725 3.275 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.179 1.179 27 C 0.368 3.632 28 O -0.372 6.372 29 C -0.167 4.167 30 C -0.104 4.104 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.276 0.724 37 H 0.163 0.837 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.096 0.904 43 H 0.176 0.824 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.448 8.716 -8.333 22.039 hybrid contribution -0.659 0.274 0.409 0.822 sum -19.106 8.990 -7.924 22.554 Atomic orbital electron populations 1.20741 0.91019 1.02724 1.02211 1.19925 0.96292 0.93097 1.02346 1.20761 0.92832 0.97841 0.99235 1.20612 0.94791 0.95803 1.06698 1.17840 0.78706 0.95490 1.00594 1.44583 1.01710 0.99801 1.71356 1.45336 1.02882 1.00999 1.78935 1.18036 0.80471 0.89266 0.75814 1.90956 1.36538 1.58132 1.50723 1.21703 0.93191 0.94256 1.26832 1.22705 0.89304 0.99026 0.73531 1.17911 0.90577 1.03612 1.09029 1.20994 0.96634 0.89182 0.93490 1.20590 0.93174 1.03830 1.06114 1.21078 0.98080 0.93809 0.92814 1.21198 0.97771 1.00966 1.05075 1.19218 0.92187 0.85461 0.89225 1.83407 1.39827 1.39775 1.46471 1.20913 0.88752 1.21173 1.15597 0.86916 1.24552 0.99064 0.96072 0.93986 1.69582 1.29666 1.29310 1.20771 0.86244 0.82755 0.80449 0.78095 1.19240 1.20291 1.17853 1.18145 0.86245 0.82812 0.75984 1.90755 1.78792 1.16975 1.50643 1.21538 0.94564 0.97914 1.02703 1.20942 0.93033 0.97856 0.98535 0.91315 0.91549 0.91676 0.85501 0.86009 0.72388 0.83702 0.86075 0.86881 0.86706 0.84347 0.90411 0.82356 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.12 -1.01 5.88 -104.58 -0.62 -1.62 16 3 C -0.09 -0.76 9.69 -39.61 -0.38 -1.14 16 4 C -0.16 -1.56 9.62 -39.39 -0.38 -1.94 16 5 C 0.17 2.11 6.66 -83.71 -0.56 1.55 16 6 N -0.36 -5.09 3.73 -10.82 -0.04 -5.13 16 7 N -0.53 -6.75 6.68 30.45 0.20 -6.55 16 8 C 0.57 9.18 7.76 -12.51 -0.10 9.08 16 9 O -0.49 -8.78 13.98 5.24 0.07 -8.71 16 10 C -0.35 -6.03 6.07 -102.39 -0.62 -6.65 16 11 C 0.18 3.17 9.47 -36.46 -0.35 2.82 16 12 C -0.21 -4.05 5.50 -104.94 -0.58 -4.62 16 13 C 0.02 0.27 7.04 -39.05 -0.28 -0.01 16 14 C -0.22 -3.61 10.02 -39.63 -0.40 -4.01 16 15 C -0.04 -0.67 10.03 -39.47 -0.40 -1.06 16 16 C -0.23 -4.63 9.15 -39.45 -0.36 -4.99 16 17 C 0.20 4.21 6.67 -38.38 -0.26 3.96 16 18 O -0.19 -4.67 8.04 1.35 0.01 -4.66 16 19 C -0.39 -10.15 9.95 30.94 0.31 -9.84 16 20 H 0.11 2.98 5.44 -52.49 -0.29 2.69 16 21 C 0.07 1.84 5.50 -17.51 -0.10 1.74 16 22 N -0.86 -23.22 13.96 55.49 0.77 -22.44 16 23 Si 0.90 20.48 28.62 -169.99 -4.86 15.61 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.25 -5.87 7.11 56.52 0.40 -5.47 16 27 C 0.57 9.59 8.01 -12.53 -0.10 9.49 16 28 O -0.50 -9.04 15.05 5.23 0.08 -8.96 16 29 C -0.15 -1.83 9.34 -39.39 -0.37 -2.20 16 30 C -0.08 -0.85 9.69 -39.61 -0.38 -1.23 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.94 6.78 -52.49 -0.36 0.59 16 36 H 0.43 4.08 7.65 -183.07 -1.40 2.68 16 37 H 0.15 2.54 8.06 -52.49 -0.42 2.12 16 38 H 0.12 1.98 6.08 -52.49 -0.32 1.66 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.14 2.85 5.64 -52.49 -0.30 2.55 16 42 H 0.29 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.16 2.24 5.32 -52.49 -0.28 1.96 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -29.72 377.24 -9.07 -38.79 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.45 Total: 7.35 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -5.54 Total: -10.98 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.94 Total: -34.12 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: 0.16 Total: -22.33 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.86 Total: 15.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.72 -9.07 -38.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059475171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.099 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds