Wall clock time and date at job start Tue Mar 31 2020 06:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38284 * 119.92490 * 2 1 4 4 C 1.38103 * 120.07022 * 179.97438 * 3 2 1 5 5 C 1.38900 * 119.92677 * 0.02728 * 4 3 2 6 6 N 1.39847 * 120.07140 * 179.97438 * 5 4 3 7 7 N 1.39471 * 124.69840 * 0.02562 * 6 5 4 8 8 C 1.34647 * 110.59757 * 179.70123 * 7 6 5 9 9 O 1.21648 * 126.57295 * 180.28183 * 8 7 6 10 10 C 1.47572 * 106.85764 * 0.45008 * 8 7 6 11 11 C 1.38010 * 127.46573 * 179.83279 * 10 8 7 12 12 C 1.46231 * 119.99634 * 352.37552 * 11 10 8 13 13 C 1.40253 * 120.26155 * 322.85412 * 12 11 10 14 14 C 1.37608 * 119.86967 * 180.29752 * 13 12 11 15 15 C 1.38740 * 120.39226 * 359.69650 * 14 13 12 16 16 C 1.38024 * 120.52573 * 0.02625 * 15 14 13 17 17 C 1.38796 * 120.11992 * 359.97438 * 16 15 14 18 18 O 1.35418 * 120.19645 * 179.97438 * 17 16 15 19 19 C 1.34730 * 117.00255 * 5.58948 * 18 17 16 20 20 H 1.07998 * 120.00112 * 354.92912 * 19 18 17 21 21 C 1.38794 * 120.00052 * 174.64461 * 19 18 17 22 22 N 1.31458 * 119.99901 * 180.27700 * 21 19 18 23 23 Si 1.86797 * 119.99833 * 0.28188 * 21 19 18 24 24 H 1.48501 * 109.47016 * 89.99511 * 23 21 19 25 25 H 1.48500 * 109.46939 * 209.99279 * 23 21 19 26 26 H 1.48498 * 109.47202 * 329.99747 * 23 21 19 27 27 C 1.34649 * 124.69677 * 179.97438 * 6 5 4 28 28 O 1.21659 * 126.56327 * 0.04743 * 27 6 5 29 29 C 1.38890 * 119.85562 * 0.25500 * 5 4 3 30 30 C 1.38105 * 119.92375 * 359.44311 * 29 5 4 31 31 H 1.08998 * 109.46938 * 89.99771 * 1 2 3 32 32 H 1.09000 * 109.47285 * 209.99650 * 1 2 3 33 33 H 1.09000 * 109.47284 * 329.99674 * 1 2 3 34 34 H 1.08001 * 119.96877 * 0.02562 * 3 2 1 35 35 H 1.07999 * 120.04244 * 180.02562 * 4 3 2 36 36 H 0.97001 * 124.69554 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.99811 * 172.38542 * 11 10 8 38 38 H 1.08000 * 120.06467 * 0.02562 * 13 12 11 39 39 H 1.08001 * 119.80387 * 179.71990 * 14 13 12 40 40 H 1.08004 * 119.73511 * 180.02562 * 15 14 13 41 41 H 1.08001 * 119.93832 * 179.97438 * 16 15 14 42 42 H 0.96999 * 119.99842 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.03925 * 179.72267 * 29 5 4 44 44 H 1.08001 * 119.96201 * 180.32675 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2020 0.0005 5 6 4.2739 -0.0001 0.0005 6 7 5.6724 0.0000 0.0005 7 7 6.4663 1.1467 0.0010 8 6 7.7722 0.8186 0.0075 9 8 8.7132 1.5896 0.0144 10 6 7.8433 -0.6554 0.0003 11 6 8.9778 -1.4412 0.0002 12 6 10.2941 -0.8247 -0.1605 13 6 10.4626 0.2669 -1.0248 14 6 11.7060 0.8370 -1.1745 15 6 12.7943 0.3423 -0.4704 16 6 12.6458 -0.7276 0.3888 17 6 11.4014 -1.3190 0.5562 18 8 11.2541 -2.3691 1.3984 19 6 12.3280 -2.7200 2.1324 20 1 13.2748 -2.2249 1.9749 21 6 12.2162 -3.7136 3.0950 22 7 13.2627 -4.0521 3.8149 23 14 10.5785 -4.5698 3.3675 24 1 10.4897 -5.7606 2.4847 25 1 10.4729 -4.9963 4.7860 26 1 9.4711 -3.6333 3.0483 27 6 6.4389 -1.1071 0.0010 28 8 6.0480 -2.2592 0.0006 29 6 3.5780 -1.2020 -0.0054 30 6 2.1970 -1.1985 0.0004 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6552 2.1328 0.0004 35 1 4.1162 2.1382 0.0010 36 1 6.1249 2.0546 0.0018 37 1 8.8935 -2.5113 0.1185 38 1 9.6189 0.6566 -1.5751 39 1 11.8355 1.6747 -1.8438 40 1 13.7654 0.7981 -0.5957 41 1 13.4996 -1.1053 0.9319 42 1 13.1846 -4.7468 4.4873 43 1 4.1161 -2.1383 -0.0100 44 1 1.6552 -2.1328 0.0011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059475171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:00 Heat of formation + Delta-G solvation = 26.819884 kcal Electronic energy + Delta-G solvation = -31262.225443 eV Core-core repulsion = 26919.616631 eV Total energy + Delta-G solvation = -4342.608812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.05588 -41.13988 -40.35632 -39.54304 -38.49849 -37.84912 -35.20334 -34.57231 -34.15690 -32.13575 -31.35744 -31.10200 -30.84099 -28.02798 -27.27198 -26.19920 -24.25811 -23.42521 -23.05113 -22.76406 -21.82642 -20.99879 -19.99029 -19.73454 -19.06813 -17.90514 -17.62964 -17.39222 -16.88700 -16.69548 -16.36708 -16.33330 -15.96361 -15.91263 -15.79138 -15.58120 -15.19301 -15.15103 -14.85372 -14.67596 -14.51633 -14.37196 -14.19901 -14.03041 -13.72445 -13.31356 -13.05117 -12.79621 -12.73899 -12.62012 -12.50587 -12.33242 -12.19128 -12.09428 -11.67846 -11.47995 -11.19682 -10.98960 -10.83512 -10.51558 -10.02469 -9.54180 -9.10991 -8.83333 -8.59359 -6.29798 -0.98198 0.10488 0.33680 0.34394 0.66385 0.67359 1.29204 1.31512 1.38190 1.46251 1.98509 2.19993 2.26408 2.70857 2.73753 2.80679 2.91748 3.08654 3.56293 3.73631 3.80281 3.91731 3.99544 4.06596 4.16283 4.16655 4.34807 4.39400 4.44995 4.48808 4.61949 4.75981 4.78887 4.84689 4.89421 4.91231 5.07410 5.08316 5.19257 5.24057 5.33136 5.34979 5.53196 5.59166 5.61039 5.63691 5.69227 5.79880 5.92545 6.06447 6.11506 6.52632 6.73737 6.91377 7.41819 8.50857 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.011530 B = 0.002729 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.844290 B =10256.947997 C =12259.049300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.087 4.087 4 C -0.151 4.151 5 C 0.133 3.867 6 N -0.354 5.354 7 N -0.502 5.502 8 C 0.576 3.424 9 O -0.505 6.505 10 C -0.341 4.341 11 C 0.160 3.840 12 C -0.205 4.205 13 C 0.009 3.991 14 C -0.199 4.199 15 C -0.032 4.032 16 C -0.251 4.251 17 C 0.168 3.832 18 O -0.224 6.224 19 C -0.401 4.401 20 H 0.093 0.907 21 C 0.024 3.976 22 N -0.907 5.907 23 Si 0.953 3.047 24 H -0.261 1.261 25 H -0.267 1.267 26 H -0.265 1.265 27 C 0.566 3.434 28 O -0.518 6.518 29 C -0.165 4.165 30 C -0.093 4.093 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.450 0.550 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.288 0.712 43 H 0.135 0.865 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.560 12.768 -10.484 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.105 4.105 4 C -0.172 4.172 5 C 0.041 3.959 6 N -0.168 5.168 7 N -0.259 5.259 8 C 0.365 3.635 9 O -0.380 6.380 10 C -0.348 4.348 11 C 0.139 3.861 12 C -0.206 4.206 13 C -0.009 4.009 14 C -0.217 4.217 15 C -0.050 4.050 16 C -0.270 4.270 17 C 0.116 3.884 18 O -0.129 6.129 19 C -0.476 4.476 20 H 0.111 0.889 21 C -0.177 4.177 22 N -0.546 5.546 23 Si 0.776 3.224 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.190 1.190 27 C 0.359 3.641 28 O -0.395 6.395 29 C -0.186 4.186 30 C -0.111 4.111 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.178 0.822 35 H 0.163 0.837 36 H 0.300 0.700 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.140 0.860 42 H 0.098 0.902 43 H 0.152 0.848 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.301 12.212 -10.242 27.411 hybrid contribution 0.123 -0.409 0.672 0.796 sum -22.178 11.803 -9.570 26.884 Atomic orbital electron populations 1.20823 0.88726 1.03875 1.03271 1.20348 0.97975 0.92603 0.99932 1.21205 0.92388 0.99181 0.97752 1.20936 0.95560 0.95531 1.05131 1.18087 0.77598 0.96712 1.03473 1.44471 1.02438 0.99230 1.70697 1.45037 1.01858 1.01583 1.77399 1.17776 0.81302 0.88417 0.75964 1.90945 1.37354 1.58181 1.51498 1.21988 0.93348 0.95415 1.24047 1.22729 0.89462 0.99300 0.74590 1.18173 0.90329 1.03733 1.08381 1.21287 0.97938 0.88573 0.93059 1.21101 0.92086 1.03664 1.04877 1.21464 1.00146 0.92265 0.91126 1.21287 0.96855 1.02459 1.06388 1.19704 0.93623 0.85750 0.89339 1.83381 1.38969 1.42074 1.48462 1.20790 0.88845 1.21532 1.16455 0.88934 1.25164 1.01640 0.96870 0.94030 1.69648 1.31173 1.31185 1.22593 0.85467 0.79122 0.79384 0.78468 1.18518 1.19148 1.18955 1.18084 0.86360 0.83216 0.76459 1.90753 1.79125 1.18003 1.51575 1.21484 0.95757 0.97227 1.04143 1.21170 0.92068 0.99464 0.98439 0.90149 0.90949 0.90104 0.82184 0.83654 0.69983 0.83984 0.84407 0.82954 0.83081 0.85978 0.90206 0.84784 0.83709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 71.24 0.71 -0.15 16 2 C -0.11 -1.50 5.88 -19.84 -0.12 -1.62 16 3 C -0.09 -1.12 9.69 22.25 0.22 -0.90 16 4 C -0.15 -2.46 9.62 22.40 0.22 -2.24 16 5 C 0.13 3.12 6.66 38.18 0.25 3.38 16 6 N -0.35 -9.50 3.73 -306.46 -1.14 -10.64 16 7 N -0.50 -11.60 6.68 -175.88 -1.17 -12.78 16 8 C 0.58 17.32 7.76 86.73 0.67 18.00 16 9 O -0.51 -16.84 13.98 -4.18 -0.06 -16.90 16 10 C -0.34 -11.51 6.07 -18.42 -0.11 -11.62 16 11 C 0.16 5.89 9.47 24.29 0.23 6.12 16 12 C -0.20 -7.93 5.50 -20.07 -0.11 -8.04 16 13 C 0.01 0.31 7.04 22.61 0.16 0.47 16 14 C -0.20 -5.91 10.02 22.24 0.22 -5.68 16 15 C -0.03 -1.03 10.03 22.34 0.22 -0.80 16 16 C -0.25 -10.32 9.15 22.35 0.20 -10.12 16 17 C 0.17 7.54 6.67 23.04 0.15 7.69 16 18 O -0.22 -11.52 8.04 -18.10 -0.15 -11.66 16 19 C -0.40 -22.39 9.95 67.95 0.68 -21.71 16 20 H 0.09 5.34 5.44 -2.91 -0.02 5.33 16 21 C 0.02 1.34 5.50 84.88 0.47 1.81 16 22 N -0.91 -52.13 13.96 21.63 0.30 -51.83 16 23 Si 0.95 44.41 28.62 68.60 1.96 46.38 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 27 C 0.57 18.83 8.01 86.71 0.69 19.52 16 28 O -0.52 -19.36 15.05 -4.22 -0.06 -19.42 16 29 C -0.16 -4.03 9.34 22.39 0.21 -3.82 16 30 C -0.09 -1.68 9.69 22.25 0.22 -1.46 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.51 8.08 -2.39 -0.02 0.50 16 33 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 34 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.15 1.58 6.78 -2.91 -0.02 1.56 16 36 H 0.45 6.89 7.65 -213.72 -1.64 5.25 16 37 H 0.14 5.27 8.06 -2.91 -0.02 5.24 16 38 H 0.14 4.11 6.08 -2.91 -0.02 4.09 16 39 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 40 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 41 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 42 H 0.29 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.13 3.93 5.32 -2.91 -0.02 3.91 16 44 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -69.49 377.24 4.32 -65.17 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -0.55 Total: 22.88 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 5.19 Total: -11.20 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -2.01 Total: -75.24 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.27 Total: -47.98 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.96 Total: 46.38 kcal Total: -69.49 4.32 -65.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059475171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.988 kcal (2) G-P(sol) polarization free energy of solvation -69.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds