Wall clock time and date at job start Tue Mar 31 2020 06:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47088 * 2 1 4 4 C 1.46896 * 111.00039 * 301.69184 * 3 2 1 5 5 C 1.50707 * 109.47168 * 293.61143 * 4 3 2 6 6 H 1.07997 * 119.99988 * 3.31697 * 5 4 3 7 7 C 1.37878 * 119.99904 * 183.30657 * 5 4 3 8 8 N 1.31510 * 120.00080 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99600 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47376 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46729 * 120.00577 * 9 7 5 12 12 H 1.48506 * 109.46900 * 240.00035 * 9 7 5 13 13 C 1.46902 * 110.99607 * 65.64658 * 3 2 1 14 14 N 1.46494 * 109.47070 * 85.06349 * 13 3 2 15 15 C 1.35062 * 125.56767 * 269.95297 * 14 13 3 16 16 O 1.21295 * 127.28251 * 0.02562 * 15 14 13 17 17 C 1.49982 * 105.43191 * 179.83805 * 15 14 13 18 18 O 1.21299 * 127.28479 * 180.26093 * 17 15 14 19 19 N 1.35058 * 105.43474 * 0.32887 * 17 15 14 20 20 C 1.46497 * 125.56886 * 179.97438 * 19 17 15 21 21 C 1.52995 * 109.47366 * 269.69457 * 20 19 17 22 22 C 1.50703 * 109.47436 * 180.02562 * 21 20 19 23 23 C 1.29439 * 117.96233 * 94.99967 * 22 21 20 24 24 C 1.50067 * 124.07509 * 180.75390 * 23 22 21 25 25 C 1.53182 * 110.05984 * 342.43728 * 24 23 22 26 26 C 1.53392 * 108.30239 * 49.77815 * 25 24 23 27 27 C 1.50067 * 117.95931 * 275.02618 * 22 21 20 28 28 C 1.34284 * 125.56685 * 89.99799 * 14 13 3 29 29 O 1.21476 * 124.29927 * 359.94367 * 28 14 13 30 30 H 1.09006 * 109.47355 * 57.25468 * 1 2 3 31 31 H 1.09004 * 109.47291 * 177.25085 * 1 2 3 32 32 H 1.09004 * 109.47404 * 297.24994 * 1 2 3 33 33 H 1.09003 * 109.47282 * 239.99973 * 2 1 3 34 34 H 1.08995 * 109.47110 * 120.00344 * 2 1 3 35 35 H 1.09001 * 109.47280 * 53.61659 * 4 3 2 36 36 H 1.09000 * 109.46901 * 173.61846 * 4 3 2 37 37 H 0.96997 * 120.00222 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.46977 * 325.06252 * 13 3 2 39 39 H 1.09000 * 109.46853 * 205.06088 * 13 3 2 40 40 H 1.09009 * 109.46983 * 149.69479 * 20 19 17 41 41 H 1.08997 * 109.47141 * 29.70294 * 20 19 17 42 42 H 1.09009 * 109.47051 * 60.00064 * 21 20 19 43 43 H 1.08993 * 109.47236 * 300.00290 * 21 20 19 44 44 H 1.07997 * 117.96146 * 0.47290 * 23 22 21 45 45 H 1.09007 * 109.35949 * 102.81210 * 24 23 22 46 46 H 1.08999 * 109.36129 * 222.40259 * 24 23 22 47 47 H 1.09003 * 109.83937 * 290.05609 * 25 24 23 48 48 H 1.09005 * 109.75608 * 169.44983 * 25 24 23 49 49 H 1.08996 * 109.63931 * 172.72849 * 26 25 24 50 50 H 1.08996 * 109.64455 * 52.09078 * 26 25 24 51 51 H 1.08998 * 109.35644 * 283.04962 * 27 22 21 52 52 H 1.09002 * 109.36465 * 42.77553 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5158 2.1215 -1.1669 5 6 2.1098 1.5389 -2.4235 6 1 2.7508 0.6716 -2.3660 7 6 1.8348 2.1130 -3.6465 8 7 1.0545 3.1693 -3.7164 9 14 2.5705 1.3904 -5.2040 10 1 3.4059 0.2127 -4.8568 11 1 1.4785 0.9699 -6.1184 12 1 3.4116 2.4139 -5.8752 13 6 1.6618 2.0698 1.2494 14 7 2.6713 1.7808 2.2710 15 6 2.6379 0.7455 3.1377 16 8 1.7853 -0.1129 3.2244 17 6 3.8803 0.8791 3.9671 18 8 4.2458 0.1508 4.8657 19 7 4.5055 1.9826 3.5028 20 6 5.7715 2.5204 4.0070 21 6 5.4895 3.5226 5.1281 22 6 6.7917 4.0764 5.6463 23 6 7.2131 5.1972 5.1547 24 6 8.4961 5.8628 5.5582 25 6 8.9892 5.2895 6.8903 26 6 8.9746 3.7588 6.7909 27 6 7.5196 3.2937 6.6997 28 6 3.7805 2.5024 2.4992 29 8 4.0891 3.4987 1.8765 30 1 -0.3634 0.5559 -0.8644 31 1 -0.3634 -1.0265 -0.0493 32 1 -0.3634 0.4705 0.9136 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 0.4296 2.0400 -1.2068 36 1 1.7987 3.1709 -1.0840 37 1 0.8612 3.5734 -4.5768 38 1 0.6884 1.7178 1.5907 39 1 1.6189 3.1449 1.0751 40 1 6.3018 3.0212 3.1969 41 1 6.3841 1.7059 4.3933 42 1 4.9591 3.0218 5.9382 43 1 4.8768 4.3371 4.7417 44 1 6.6057 5.6812 4.4043 45 1 9.2486 5.6940 4.7878 46 1 8.3284 6.9342 5.6679 47 1 8.3308 5.6105 7.6976 48 1 10.0044 5.6343 7.0866 49 1 9.4416 3.3297 7.6773 50 1 9.5163 3.4444 5.8988 51 1 7.0314 3.4433 7.6627 52 1 7.4965 2.2345 6.4436 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060159910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:20 Heat of formation + Delta-G solvation = -46.319135 kcal Electronic energy + Delta-G solvation = -33422.940225 eV Core-core repulsion = 29003.402704 eV Total energy + Delta-G solvation = -4419.537520 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.29162 -39.36247 -39.19626 -38.81533 -37.28737 -36.38739 -35.42556 -33.38300 -32.57147 -31.09596 -30.02832 -29.22026 -27.52233 -26.03729 -24.99784 -24.28218 -23.48099 -23.19817 -21.99192 -21.78806 -21.14528 -19.70718 -18.08151 -17.68834 -17.59361 -17.09848 -16.57306 -16.41307 -15.97869 -15.44124 -15.27537 -15.24358 -15.05735 -14.77124 -14.75086 -14.45535 -14.35585 -14.08516 -13.93531 -13.28316 -13.24841 -13.16873 -12.85358 -12.70509 -12.52608 -12.45848 -12.36163 -11.99570 -11.80700 -11.45548 -11.25817 -11.16523 -11.14504 -10.91972 -10.82671 -10.78091 -10.67786 -10.55793 -10.36517 -10.19840 -10.17030 -10.01171 -9.73729 -9.31852 -9.04840 -8.50798 -7.54860 -6.09705 -4.10753 0.28519 1.70293 1.96954 2.09615 2.49169 2.67684 3.27848 3.35750 3.40188 3.87655 4.28221 4.31948 4.36854 4.47594 4.56964 4.72994 4.75678 4.82867 4.88084 4.97622 5.04582 5.09476 5.18768 5.25225 5.26813 5.27242 5.30793 5.43278 5.52435 5.58239 5.60273 5.63228 5.68354 5.69285 5.73397 5.73965 5.87124 5.90157 5.98081 6.04298 6.32702 6.36243 6.52876 6.57460 6.70331 6.74565 6.79121 7.09849 7.14812 7.24387 7.58466 7.69526 7.89345 8.01981 8.36202 8.94805 9.53339 11.01076 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002329 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.861014 B =12020.802687 C =13646.930713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 N -0.546 5.546 4 C 0.194 3.806 5 C -0.506 4.506 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.274 3.726 14 N -0.557 5.557 15 C 0.506 3.494 16 O -0.416 6.416 17 C 0.508 3.492 18 O -0.423 6.423 19 N -0.576 5.576 20 C 0.127 3.873 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.145 4.145 24 C -0.091 4.091 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.084 4.084 28 C 0.710 3.290 29 O -0.474 6.474 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.006 0.994 36 H 0.037 0.963 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.107 0.893 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.073 0.927 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.980 2.367 21.593 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.271 5.271 4 C 0.070 3.930 5 C -0.545 4.545 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.726 3.274 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.065 3.935 14 N -0.307 5.307 15 C 0.286 3.714 16 O -0.281 6.281 17 C 0.289 3.711 18 O -0.289 6.289 19 N -0.326 5.326 20 C 0.007 3.993 21 C -0.143 4.143 22 C -0.123 4.123 23 C -0.163 4.163 24 C -0.128 4.128 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.121 4.121 28 C 0.413 3.587 29 O -0.341 6.341 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.024 0.976 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.288 2.187 21.557 24.432 hybrid contribution -0.520 -0.264 -1.001 1.159 sum 10.767 1.923 20.556 23.285 Atomic orbital electron populations 1.22367 0.98546 1.01798 1.01847 1.22065 0.92892 0.90267 1.01789 1.61918 1.60284 1.02929 1.01936 1.19853 0.94145 0.93730 0.85229 1.21091 1.29462 1.13773 0.90131 0.91869 1.24949 0.95300 0.94995 0.99183 1.69945 1.36912 1.21398 1.25315 0.86439 0.78912 0.79110 0.82945 1.19717 1.21090 1.20973 1.22311 0.86059 1.00819 0.84352 1.47216 1.23594 1.26221 1.33622 1.20843 0.87114 0.81855 0.81557 1.90820 1.38144 1.32805 1.66310 1.21078 0.85620 0.80723 0.83673 1.90805 1.68391 1.43903 1.25762 1.46811 1.24549 1.27140 1.34060 1.21780 0.81520 0.98140 0.97820 1.21113 0.96287 0.99178 0.97743 1.20583 0.96263 0.96523 0.98963 1.22055 0.97891 0.96356 1.00003 1.20477 0.95375 0.99626 0.97296 1.21640 1.01076 0.95691 0.97471 1.21611 0.96283 0.95861 1.02050 1.20412 0.94903 0.99237 0.97532 1.15968 0.79780 0.83299 0.79681 1.91036 1.70545 1.23241 1.49295 0.90697 0.92887 0.93746 0.89668 0.92898 0.97596 0.94516 0.92869 0.90133 0.87328 0.87790 0.88250 0.90598 0.90284 0.87453 0.90679 0.91079 0.91802 0.91812 0.91696 0.91595 0.90881 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 9.32 37.15 0.35 -2.88 16 2 C 0.06 1.09 5.83 -3.83 -0.02 1.06 16 3 N -0.55 -11.07 4.80 -239.99 -1.15 -12.22 16 4 C 0.19 4.70 4.40 -4.97 -0.02 4.68 16 5 C -0.51 -13.59 8.60 -34.44 -0.30 -13.88 16 6 H 0.06 1.71 7.00 -52.49 -0.37 1.34 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 9 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.27 4.60 5.58 -63.32 -0.35 4.25 16 14 N -0.56 -8.49 2.90 -124.52 -0.36 -8.85 16 15 C 0.51 7.42 7.76 -11.20 -0.09 7.33 16 16 O -0.42 -6.79 16.66 5.54 0.09 -6.70 16 17 C 0.51 6.67 8.31 -11.21 -0.09 6.58 16 18 O -0.42 -6.02 17.88 5.54 0.10 -5.93 16 19 N -0.58 -6.99 2.66 -121.22 -0.32 -7.31 16 20 C 0.13 1.20 5.84 -4.05 -0.02 1.18 16 21 C -0.10 -0.89 5.55 -27.88 -0.15 -1.04 16 22 C -0.12 -0.95 5.09 -100.94 -0.51 -1.47 16 23 C -0.14 -1.14 9.37 -35.90 -0.34 -1.48 16 24 C -0.09 -0.60 6.12 -28.10 -0.17 -0.77 16 25 C -0.12 -0.72 6.02 -26.43 -0.16 -0.88 16 26 C -0.12 -0.73 6.01 -26.51 -0.16 -0.89 16 27 C -0.08 -0.56 5.80 -28.17 -0.16 -0.73 16 28 C 0.71 10.53 8.32 -87.80 -0.73 9.80 16 29 O -0.47 -8.29 17.27 5.39 0.09 -8.19 16 30 H 0.07 1.45 6.09 -51.93 -0.32 1.14 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.70 6.31 -51.93 -0.33 0.38 16 33 H 0.08 1.73 6.86 -51.93 -0.36 1.37 16 34 H 0.05 0.95 6.21 -51.93 -0.32 0.62 16 35 H 0.01 0.16 5.88 -51.93 -0.31 -0.15 16 36 H 0.04 0.97 7.78 -51.93 -0.40 0.56 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.08 1.25 5.79 -51.93 -0.30 0.95 16 39 H 0.11 1.82 7.41 -51.93 -0.38 1.43 16 40 H 0.10 0.99 7.98 -51.92 -0.41 0.58 16 41 H 0.10 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.08 0.64 8.12 -51.92 -0.42 0.22 16 43 H 0.08 0.73 7.79 -51.93 -0.40 0.32 16 44 H 0.11 0.89 7.74 -52.49 -0.41 0.49 16 45 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 LS Contribution 420.21 15.07 6.33 6.33 Total: -1.00 -30.36 420.21 -10.63 -40.98 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.09 Total: -1.77 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -3.04 Total: 12.34 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -1.10 Total: -53.30 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.28 Total: -20.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -30.36 -10.63 -40.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060159910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.336 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds