Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47088 * 2 1 4 4 C 1.46896 * 111.00039 * 301.69184 * 3 2 1 5 5 C 1.50707 * 109.47168 * 293.61143 * 4 3 2 6 6 H 1.07997 * 119.99988 * 3.31697 * 5 4 3 7 7 C 1.37878 * 119.99904 * 183.30657 * 5 4 3 8 8 N 1.31510 * 120.00080 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99600 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47376 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46729 * 120.00577 * 9 7 5 12 12 H 1.48506 * 109.46900 * 240.00035 * 9 7 5 13 13 C 1.46902 * 110.99607 * 65.64658 * 3 2 1 14 14 N 1.46494 * 109.47070 * 85.06349 * 13 3 2 15 15 C 1.35062 * 125.56767 * 269.95297 * 14 13 3 16 16 O 1.21295 * 127.28251 * 0.02562 * 15 14 13 17 17 C 1.49982 * 105.43191 * 179.83805 * 15 14 13 18 18 O 1.21299 * 127.28479 * 180.26093 * 17 15 14 19 19 N 1.35058 * 105.43474 * 0.32887 * 17 15 14 20 20 C 1.46497 * 125.56886 * 179.97438 * 19 17 15 21 21 C 1.52995 * 109.47366 * 269.69457 * 20 19 17 22 22 C 1.50703 * 109.47436 * 180.02562 * 21 20 19 23 23 C 1.29439 * 117.96233 * 94.99967 * 22 21 20 24 24 C 1.50067 * 124.07509 * 180.75390 * 23 22 21 25 25 C 1.53182 * 110.05984 * 342.43728 * 24 23 22 26 26 C 1.53392 * 108.30239 * 49.77815 * 25 24 23 27 27 C 1.50067 * 117.95931 * 275.02618 * 22 21 20 28 28 C 1.34284 * 125.56685 * 89.99799 * 14 13 3 29 29 O 1.21476 * 124.29927 * 359.94367 * 28 14 13 30 30 H 1.09006 * 109.47355 * 57.25468 * 1 2 3 31 31 H 1.09004 * 109.47291 * 177.25085 * 1 2 3 32 32 H 1.09004 * 109.47404 * 297.24994 * 1 2 3 33 33 H 1.09003 * 109.47282 * 239.99973 * 2 1 3 34 34 H 1.08995 * 109.47110 * 120.00344 * 2 1 3 35 35 H 1.09001 * 109.47280 * 53.61659 * 4 3 2 36 36 H 1.09000 * 109.46901 * 173.61846 * 4 3 2 37 37 H 0.96997 * 120.00222 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.46977 * 325.06252 * 13 3 2 39 39 H 1.09000 * 109.46853 * 205.06088 * 13 3 2 40 40 H 1.09009 * 109.46983 * 149.69479 * 20 19 17 41 41 H 1.08997 * 109.47141 * 29.70294 * 20 19 17 42 42 H 1.09009 * 109.47051 * 60.00064 * 21 20 19 43 43 H 1.08993 * 109.47236 * 300.00290 * 21 20 19 44 44 H 1.07997 * 117.96146 * 0.47290 * 23 22 21 45 45 H 1.09007 * 109.35949 * 102.81210 * 24 23 22 46 46 H 1.08999 * 109.36129 * 222.40259 * 24 23 22 47 47 H 1.09003 * 109.83937 * 290.05609 * 25 24 23 48 48 H 1.09005 * 109.75608 * 169.44983 * 25 24 23 49 49 H 1.08996 * 109.63931 * 172.72849 * 26 25 24 50 50 H 1.08996 * 109.64455 * 52.09078 * 26 25 24 51 51 H 1.08998 * 109.35644 * 283.04962 * 27 22 21 52 52 H 1.09002 * 109.36465 * 42.77553 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5158 2.1215 -1.1669 5 6 2.1098 1.5389 -2.4235 6 1 2.7508 0.6716 -2.3660 7 6 1.8348 2.1130 -3.6465 8 7 1.0545 3.1693 -3.7164 9 14 2.5705 1.3904 -5.2040 10 1 3.4059 0.2127 -4.8568 11 1 1.4785 0.9699 -6.1184 12 1 3.4116 2.4139 -5.8752 13 6 1.6618 2.0698 1.2494 14 7 2.6713 1.7808 2.2710 15 6 2.6379 0.7455 3.1377 16 8 1.7853 -0.1129 3.2244 17 6 3.8803 0.8791 3.9671 18 8 4.2458 0.1508 4.8657 19 7 4.5055 1.9826 3.5028 20 6 5.7715 2.5204 4.0070 21 6 5.4895 3.5226 5.1281 22 6 6.7917 4.0764 5.6463 23 6 7.2131 5.1972 5.1547 24 6 8.4961 5.8628 5.5582 25 6 8.9892 5.2895 6.8903 26 6 8.9746 3.7588 6.7909 27 6 7.5196 3.2937 6.6997 28 6 3.7805 2.5024 2.4992 29 8 4.0891 3.4987 1.8765 30 1 -0.3634 0.5559 -0.8644 31 1 -0.3634 -1.0265 -0.0493 32 1 -0.3634 0.4705 0.9136 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5139 0.8899 35 1 0.4296 2.0400 -1.2068 36 1 1.7987 3.1709 -1.0840 37 1 0.8612 3.5734 -4.5768 38 1 0.6884 1.7178 1.5907 39 1 1.6189 3.1449 1.0751 40 1 6.3018 3.0212 3.1969 41 1 6.3841 1.7059 4.3933 42 1 4.9591 3.0218 5.9382 43 1 4.8768 4.3371 4.7417 44 1 6.6057 5.6812 4.4043 45 1 9.2486 5.6940 4.7878 46 1 8.3284 6.9342 5.6679 47 1 8.3308 5.6105 7.6976 48 1 10.0044 5.6343 7.0866 49 1 9.4416 3.3297 7.6773 50 1 9.5163 3.4444 5.8988 51 1 7.0314 3.4433 7.6627 52 1 7.4965 2.2345 6.4436 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060159910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = -62.861051 kcal Electronic energy + Delta-G solvation = -33423.657536 eV Core-core repulsion = 29003.402704 eV Total energy + Delta-G solvation = -4420.254832 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.48242 -40.43690 -40.37176 -39.60022 -38.81353 -37.62551 -36.49291 -34.75448 -34.07056 -31.62822 -31.28336 -30.50963 -29.00926 -27.32482 -26.33917 -25.32489 -24.90965 -24.01822 -23.17519 -22.70891 -22.01612 -21.26164 -19.06547 -18.87615 -18.43558 -18.34302 -18.24405 -17.68852 -17.01317 -16.91144 -16.70628 -16.46685 -16.26747 -16.00643 -15.75660 -15.44731 -15.43495 -15.16797 -14.78422 -14.59137 -14.32450 -14.08611 -13.95815 -13.85224 -13.65167 -13.35527 -13.23741 -13.10194 -13.05233 -12.93277 -12.81715 -12.60282 -12.55483 -12.27965 -12.05069 -11.94190 -11.81502 -11.61925 -11.51117 -11.43117 -11.24802 -11.21814 -11.11454 -10.96816 -10.59023 -9.66497 -9.21079 -8.19372 -6.27034 -0.89781 0.62988 0.87511 1.25062 1.37547 1.40566 1.42522 1.47926 1.54305 2.40641 2.69551 3.11937 3.21276 3.42219 3.66794 3.72616 3.88874 3.98938 4.04006 4.11089 4.14840 4.18422 4.23433 4.26648 4.33156 4.38751 4.44628 4.50441 4.57664 4.60591 4.74080 4.76025 4.81300 4.85404 4.96832 4.99320 5.05691 5.09586 5.13390 5.16060 5.23710 5.29320 5.36389 5.38762 5.46881 5.51101 5.57614 5.63986 5.77044 5.97004 6.02395 6.11097 6.20504 6.39074 6.49364 6.85547 7.41148 8.91347 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002329 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.861014 B =12020.802687 C =13646.930713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.062 3.938 3 N -0.558 5.558 4 C 0.212 3.788 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.279 3.721 14 N -0.559 5.559 15 C 0.511 3.489 16 O -0.429 6.429 17 C 0.524 3.476 18 O -0.426 6.426 19 N -0.563 5.563 20 C 0.123 3.877 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.152 4.152 24 C -0.092 4.092 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.084 4.084 28 C 0.715 3.285 29 O -0.502 6.502 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.065 0.935 35 H -0.003 1.003 36 H 0.009 0.991 37 H 0.264 0.736 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.118 0.882 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.063 0.937 51 H 0.076 0.924 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.060 1.383 22.823 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.066 4.066 3 N -0.284 5.284 4 C 0.087 3.913 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.069 3.931 14 N -0.308 5.308 15 C 0.292 3.708 16 O -0.295 6.295 17 C 0.305 3.695 18 O -0.291 6.291 19 N -0.312 5.312 20 C 0.004 3.996 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.170 4.170 24 C -0.129 4.129 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.121 4.121 28 C 0.419 3.581 29 O -0.371 6.371 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.015 0.985 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.082 0.918 51 H 0.095 0.905 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.393 1.187 22.832 26.006 hybrid contribution -0.849 0.048 -1.307 1.560 sum 11.543 1.235 21.525 24.456 Atomic orbital electron populations 1.22252 0.97229 1.02776 1.01351 1.22013 0.93950 0.89183 1.01404 1.61745 1.60935 1.03525 1.02151 1.19441 0.93317 0.92392 0.86192 1.21382 1.29207 1.13570 0.91460 0.92411 1.25748 0.95714 0.95360 1.02296 1.70049 1.38132 1.22596 1.26133 0.85450 0.78244 0.78418 0.79191 1.19176 1.20398 1.20732 1.22227 0.87132 1.00441 0.83278 1.47072 1.23660 1.26709 1.33406 1.21030 0.87363 0.81178 0.81274 1.90814 1.38810 1.33188 1.66673 1.20625 0.84906 0.80734 0.83254 1.90820 1.68311 1.44100 1.25908 1.46796 1.24865 1.26477 1.33023 1.22066 0.80332 0.99027 0.98133 1.21041 0.96716 0.98563 0.97367 1.20625 0.95921 0.96616 0.99283 1.22160 0.98439 0.96555 0.99865 1.20511 0.94741 0.99821 0.97831 1.21641 1.01581 0.95675 0.96861 1.21619 0.95806 0.95887 1.02437 1.20446 0.95252 0.99229 0.97204 1.15991 0.79627 0.82772 0.79758 1.91028 1.71153 1.24493 1.50455 0.93239 0.90948 0.92288 0.91547 0.91626 0.98528 0.97285 0.92714 0.88402 0.87695 0.87847 0.86373 0.90218 0.91323 0.88436 0.90443 0.90683 0.91974 0.90809 0.90669 0.91823 0.90516 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.95 9.32 71.98 0.67 -5.28 16 2 C 0.06 2.30 5.83 86.30 0.50 2.80 16 3 N -0.56 -22.75 4.80 -913.18 -4.38 -27.13 16 4 C 0.21 10.49 4.40 85.56 0.38 10.87 16 5 C -0.52 -28.21 8.60 25.60 0.22 -27.99 16 6 H 0.06 3.15 7.00 -2.91 -0.02 3.13 16 7 C 0.01 0.40 5.46 84.66 0.46 0.87 16 8 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 9 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.28 9.30 5.58 170.81 0.95 10.25 16 14 N -0.56 -16.62 2.90 -784.68 -2.28 -18.90 16 15 C 0.51 14.21 7.76 87.39 0.68 14.89 16 16 O -0.43 -13.25 16.66 -3.08 -0.05 -13.30 16 17 C 0.52 12.82 8.31 87.39 0.73 13.55 16 18 O -0.43 -11.15 17.88 -3.09 -0.06 -11.20 16 19 N -0.56 -12.94 2.66 -774.22 -2.06 -15.00 16 20 C 0.12 2.15 5.84 86.38 0.50 2.66 16 21 C -0.10 -1.57 5.55 29.85 0.17 -1.40 16 22 C -0.12 -1.78 5.09 -15.09 -0.08 -1.86 16 23 C -0.15 -2.29 9.37 27.04 0.25 -2.04 16 24 C -0.09 -1.12 6.12 29.71 0.18 -0.94 16 25 C -0.12 -1.24 6.02 30.79 0.19 -1.05 16 26 C -0.12 -1.23 6.01 30.73 0.18 -1.04 16 27 C -0.08 -0.98 5.80 29.66 0.17 -0.81 16 28 C 0.72 20.81 8.32 179.36 1.49 22.31 16 29 O -0.50 -17.64 17.27 -3.64 -0.06 -17.70 16 30 H 0.05 1.92 6.09 -2.38 -0.01 1.90 16 31 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.06 1.78 6.31 -2.38 -0.02 1.77 16 33 H 0.07 2.69 6.86 -2.39 -0.02 2.68 16 34 H 0.07 2.26 6.21 -2.39 -0.01 2.25 16 35 H 0.00 -0.15 5.88 -2.39 -0.01 -0.16 16 36 H 0.01 0.49 7.78 -2.39 -0.02 0.48 16 37 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.10 2.92 5.79 -2.39 -0.01 2.91 16 39 H 0.10 3.58 7.41 -2.39 -0.02 3.56 16 40 H 0.10 1.88 7.98 -2.38 -0.02 1.86 16 41 H 0.12 1.67 8.06 -2.39 -0.02 1.65 16 42 H 0.08 1.21 8.12 -2.38 -0.02 1.20 16 43 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 44 H 0.10 1.63 7.74 -2.91 -0.02 1.61 16 45 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 48 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 50 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 51 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 52 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 Total: -1.00 -64.27 420.21 2.01 -62.26 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.93 Total: 13.11 kcal Atomic # 6 Polarization: 28.12 SS G_CDS: 7.65 Total: 35.77 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -8.43 Total: -114.68 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.17 Total: -42.21 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -64.27 2.01 -62.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060159910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.603 kcal (2) G-P(sol) polarization free energy of solvation -64.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds