Wall clock time and date at job start Tue Mar 31 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31274 * 1 3 3 Si 1.86798 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47203 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47215 * 300.00068 * 3 2 1 6 6 H 1.48504 * 109.47201 * 59.99939 * 3 2 1 7 7 C 1.39185 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99705 * 193.50324 * 7 2 1 9 9 N 1.36667 * 120.00460 * 13.78078 * 7 2 1 10 10 C 1.34773 * 120.00141 * 191.82795 * 9 7 2 11 11 O 1.21604 * 120.00363 * 3.66986 * 10 9 7 12 12 C 1.47696 * 119.99902 * 183.67393 * 10 9 7 13 13 C 1.38787 * 121.31888 * 308.67168 * 12 10 9 14 14 C 1.40492 * 119.38354 * 180.02562 * 13 12 10 15 15 C 1.47531 * 118.88734 * 180.02562 * 14 13 12 16 16 C 1.35006 * 125.27261 * 179.72343 * 15 14 13 17 17 C 1.37752 * 114.70310 * 179.78862 * 16 15 14 18 18 C 1.33782 * 115.08332 * 0.50669 * 17 16 15 19 19 S 1.75863 * 109.75693 * 359.72339 * 18 17 16 20 20 N 1.31967 * 122.22724 * 0.02562 * 14 13 12 21 21 C 1.33436 * 122.30958 * 0.02562 * 20 14 13 22 22 C 1.40706 * 121.03407 * 180.02562 * 21 20 14 23 23 C 1.36134 * 119.72687 * 179.97438 * 22 21 20 24 24 C 1.39271 * 121.07101 * 0.02562 * 23 22 21 25 25 C 1.36409 * 120.81000 * 359.96141 * 24 23 22 26 26 C 1.39828 * 119.61678 * 359.74296 * 25 24 23 27 27 C 1.46504 * 119.99761 * 11.82794 * 9 7 2 28 28 C 1.52995 * 117.50089 * 128.01906 * 27 9 7 29 29 C 1.52995 * 117.49828 * 59.35683 * 27 9 7 30 30 H 0.96990 * 120.00255 * 4.94979 * 1 2 3 31 31 H 1.07997 * 120.31064 * 359.97438 * 13 12 10 32 32 H 1.07991 * 122.64726 * 359.97438 * 16 15 14 33 33 H 1.07997 * 122.45956 * 180.20978 * 17 16 15 34 34 H 1.07995 * 125.12310 * 179.75490 * 18 17 16 35 35 H 1.08009 * 120.13672 * 359.95652 * 22 21 20 36 36 H 1.08004 * 119.46227 * 180.02562 * 23 22 21 37 37 H 1.07997 * 119.59289 * 179.97438 * 24 23 22 38 38 H 1.08006 * 120.18899 * 180.02562 * 25 24 23 39 39 H 1.08998 * 115.54734 * 273.68955 * 27 9 7 40 40 H 1.09003 * 117.49950 * 359.97438 * 28 27 9 41 41 H 1.09002 * 117.50136 * 145.02128 * 28 27 9 42 42 H 1.09003 * 117.49666 * 214.97990 * 29 27 9 43 43 H 1.08994 * 117.50489 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2467 1.6178 0.0000 4 1 3.7066 1.3465 -0.0006 5 1 1.8879 2.3965 -1.2125 6 1 1.8879 2.3965 1.2125 7 6 2.0087 -1.2054 -0.0005 8 1 3.0663 -1.2183 0.2179 9 7 1.3550 -2.3718 -0.2830 10 6 1.9584 -3.5550 -0.0541 11 8 3.0574 -3.5866 0.4654 12 6 1.2849 -4.8132 -0.4344 13 6 -0.0184 -5.0816 -0.0399 14 6 -0.6195 -6.2919 -0.4242 15 6 -2.0056 -6.5658 0.0006 16 6 -2.7071 -7.6797 -0.2988 17 6 -3.9848 -7.7109 0.2151 18 6 -4.3385 -6.6312 0.9215 19 16 -3.0027 -5.4883 0.9693 20 7 0.0137 -7.1922 -1.1524 21 6 1.2676 -7.0154 -1.5731 22 6 1.9170 -7.9932 -2.3490 23 6 3.1966 -7.7850 -2.7644 24 6 3.8786 -6.6166 -2.4338 25 6 3.2805 -5.6470 -1.6835 26 6 1.9647 -5.8256 -1.2453 27 6 -0.0018 -2.3361 -0.8346 28 6 -0.2679 -3.1404 -2.1085 29 6 -0.2037 -1.6122 -2.1672 30 1 -0.4850 0.8368 -0.0725 31 1 -0.5651 -4.3672 0.5575 32 1 -2.2978 -8.4842 -0.8916 33 1 -4.6536 -8.5436 0.0553 34 1 -5.2993 -6.4838 1.3919 35 1 1.4026 -8.9053 -2.6136 36 1 3.6909 -8.5382 -3.3601 37 1 4.8933 -6.4764 -2.7757 38 1 3.8186 -4.7446 -1.4333 39 1 -0.8059 -2.2742 -0.1013 40 1 0.5666 -3.6959 -2.5366 41 1 -1.2472 -3.6074 -2.2136 42 1 -1.1409 -1.0743 -2.3108 43 1 0.6727 -1.1621 -2.6334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063448473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:05 Heat of formation + Delta-G solvation = 89.926319 kcal Electronic energy + Delta-G solvation = -30053.836450 eV Core-core repulsion = 26156.717010 eV Total energy + Delta-G solvation = -3897.119440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98311 -40.45542 -38.99035 -38.03142 -37.65670 -35.21018 -34.13729 -33.22601 -32.60600 -31.13337 -29.41562 -27.65348 -26.11156 -24.99048 -24.09777 -23.64232 -23.21559 -23.10518 -21.13490 -20.05598 -19.51544 -19.07505 -18.21648 -18.06550 -17.68847 -17.08848 -16.57611 -16.09170 -16.02891 -15.97256 -15.64816 -15.54878 -15.30886 -14.93000 -14.73052 -14.33419 -14.10869 -14.00278 -13.94934 -13.46676 -13.24904 -13.06077 -12.98786 -12.73316 -12.57932 -12.53379 -12.40190 -12.36193 -12.15690 -11.94608 -11.66094 -11.47382 -11.16907 -10.94497 -10.73432 -10.33669 -10.30612 -9.95467 -9.47559 -9.41010 -8.94349 -8.38620 -5.99201 -1.00959 -0.44038 0.28028 0.56865 0.75784 1.07275 1.32927 1.39742 1.51550 1.65994 1.91260 2.15165 2.19611 2.69818 2.95985 3.03685 3.04044 3.12452 3.44441 3.51639 3.65217 3.82815 4.02843 4.09142 4.12170 4.23089 4.26921 4.34898 4.37648 4.44753 4.48195 4.65156 4.67573 4.76077 4.83860 5.00159 5.02576 5.03773 5.19932 5.22495 5.28767 5.30790 5.38806 5.40068 5.48462 5.51543 5.56173 5.86501 5.90084 6.35504 6.75892 7.02125 7.27394 7.83860 8.59392 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.008368 B = 0.004472 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3345.276680 B = 6259.117277 C = 8883.327903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.018 3.982 3 Si 0.983 3.017 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.272 1.272 7 C -0.351 4.351 8 H 0.077 0.923 9 N -0.402 5.402 10 C 0.459 3.541 11 O -0.625 6.625 12 C -0.031 4.031 13 C -0.142 4.142 14 C 0.232 3.768 15 C -0.185 4.185 16 C -0.081 4.081 17 C -0.144 4.144 18 C -0.190 4.190 19 S 0.110 5.890 20 N -0.469 5.469 21 C 0.120 3.880 22 C -0.098 4.098 23 C -0.086 4.086 24 C -0.109 4.109 25 C -0.112 4.112 26 C -0.100 4.100 27 C 0.118 3.882 28 C -0.186 4.186 29 C -0.131 4.131 30 H 0.279 0.721 31 H 0.131 0.869 32 H 0.154 0.846 33 H 0.176 0.824 34 H 0.199 0.801 35 H 0.163 0.837 36 H 0.177 0.823 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.931 -14.340 -5.754 17.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.202 1.202 5 H -0.187 1.187 6 H -0.198 1.198 7 C -0.478 4.478 8 H 0.095 0.905 9 N -0.116 5.116 10 C 0.249 3.751 11 O -0.514 6.514 12 C -0.042 4.042 13 C -0.163 4.163 14 C 0.080 3.920 15 C -0.302 4.302 16 C -0.115 4.115 17 C -0.174 4.174 18 C -0.326 4.326 19 S 0.375 5.625 20 N -0.179 5.179 21 C -0.002 4.002 22 C -0.116 4.116 23 C -0.105 4.105 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.103 4.103 27 C 0.014 3.986 28 C -0.224 4.224 29 C -0.169 4.169 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.172 0.828 33 H 0.193 0.807 34 H 0.216 0.784 35 H 0.180 0.820 36 H 0.194 0.806 37 H 0.173 0.827 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.706 -13.504 -5.066 16.847 hybrid contribution 0.920 0.978 0.112 1.347 sum -7.786 -12.527 -4.954 15.559 Atomic orbital electron populations 1.69983 1.06492 1.29254 1.43826 1.25913 0.96323 1.01587 0.95025 0.85037 0.78244 0.77444 0.78622 1.20228 1.18739 1.19768 1.19709 0.94252 0.84365 1.49523 0.90472 1.43255 1.13171 1.04335 1.50881 1.18034 0.87258 0.83599 0.86171 1.90577 1.23188 1.87070 1.50613 1.21365 0.93705 0.93927 0.95214 1.22139 0.94032 0.98149 1.02000 1.18868 0.91806 0.88822 0.92550 1.22635 0.96046 1.01547 1.09991 1.20691 0.94070 0.97149 0.99541 1.20400 0.96309 1.00596 1.00055 1.26336 1.03232 0.97136 1.05906 1.84683 1.05840 1.21556 1.50436 1.67592 1.08609 1.30270 1.11401 1.19042 0.89908 0.92968 0.98254 1.21113 0.95340 0.98440 0.96743 1.21340 0.93662 0.97269 0.98223 1.21341 1.01450 0.93249 0.96610 1.21062 0.93459 1.00528 0.98084 1.19842 0.96184 0.94782 0.99468 1.21095 0.84328 1.03914 0.89298 1.23504 1.02315 0.94944 1.01633 1.22762 1.02075 0.92619 0.99409 0.91031 0.85143 0.82814 0.80665 0.78397 0.81957 0.80597 0.82739 0.87702 0.87836 0.91230 0.87026 0.87697 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.52 9.81 21.70 0.21 -42.30 16 2 C 0.02 0.90 4.93 85.00 0.42 1.31 16 3 Si 0.98 41.16 29.58 68.60 2.03 43.19 16 4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.35 -19.90 9.33 84.17 0.79 -19.12 16 8 H 0.08 4.73 7.28 -2.91 -0.02 4.70 16 9 N -0.40 -21.40 2.93 -616.59 -1.80 -23.21 16 10 C 0.46 24.59 6.58 86.74 0.57 25.16 16 11 O -0.62 -37.72 15.39 -4.04 -0.06 -37.78 16 12 C -0.03 -1.40 3.71 -18.51 -0.07 -1.47 16 13 C -0.14 -5.63 6.79 22.95 0.16 -5.48 16 14 C 0.23 8.10 6.74 42.13 0.28 8.39 16 15 C -0.18 -5.33 6.37 23.98 0.15 -5.18 16 16 C -0.08 -1.88 9.80 21.41 0.21 -1.67 16 17 C -0.14 -2.50 10.16 21.14 0.21 -2.28 16 18 C -0.19 -3.32 11.23 66.81 0.75 -2.57 16 19 S 0.11 2.80 22.13 -56.49 -1.25 1.55 16 20 N -0.47 -15.93 9.75 -178.37 -1.74 -17.67 16 21 C 0.12 4.10 6.62 40.37 0.27 4.37 16 22 C -0.10 -2.48 9.99 22.38 0.22 -2.26 16 23 C -0.09 -1.84 9.94 22.03 0.22 -1.62 16 24 C -0.11 -2.93 9.97 22.09 0.22 -2.71 16 25 C -0.11 -4.26 9.31 22.23 0.21 -4.06 16 26 C -0.10 -4.02 5.86 -19.89 -0.12 -4.14 16 27 C 0.12 5.37 2.43 44.99 0.11 5.48 16 28 C -0.19 -7.23 7.69 30.62 0.24 -7.00 16 29 C -0.13 -5.40 8.44 30.62 0.26 -5.14 16 30 H 0.28 12.76 8.31 -92.72 -0.77 11.98 16 31 H 0.13 5.25 6.12 -2.91 -0.02 5.24 16 32 H 0.15 3.34 7.94 -2.92 -0.02 3.32 16 33 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.20 2.11 8.06 -2.91 -0.02 2.08 16 35 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 38 H 0.10 4.64 6.56 -2.91 -0.02 4.62 16 39 H 0.10 4.87 7.51 -2.39 -0.02 4.85 16 40 H 0.07 2.91 7.15 -2.39 -0.02 2.89 16 41 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -70.47 372.37 3.54 -66.93 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 1.06 Total: 29.27 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 5.10 Total: -19.97 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -3.33 Total: -83.18 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.06 Total: -37.78 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.25 Total: 1.55 kcal Total: -70.47 3.54 -66.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063448473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.856 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds