Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31232 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47376 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46693 * 300.00068 * 3 2 1 6 6 H 1.48502 * 109.47121 * 59.99579 * 3 2 1 7 7 C 1.39173 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99797 * 158.78423 * 7 2 1 9 9 N 1.36356 * 119.99974 * 339.05580 * 7 2 1 10 10 N 1.38401 * 117.02267 * 350.58710 * 9 7 2 11 11 C 1.30172 * 124.64828 * 200.74738 * 10 9 7 12 12 C 1.46334 * 120.34049 * 179.34514 * 11 10 9 13 13 O 1.21737 * 120.00409 * 72.63058 * 12 11 10 14 14 N 1.34772 * 119.99985 * 252.63484 * 12 11 10 15 15 C 1.46932 * 120.63196 * 354.43459 * 14 12 11 16 16 C 1.53625 * 108.54341 * 126.36952 * 15 14 12 17 17 C 1.53039 * 109.24153 * 54.85895 * 16 15 14 18 18 C 1.53042 * 109.53975 * 298.50989 * 17 16 15 19 19 C 1.46934 * 120.63247 * 174.71781 * 14 12 11 20 20 S 1.76674 * 119.31655 * 359.31905 * 11 10 9 21 21 O 1.42096 * 106.67350 * 98.79758 * 20 11 10 22 22 O 1.42105 * 106.67453 * 232.44567 * 20 11 10 23 23 C 1.76521 * 105.45041 * 345.62280 * 20 11 10 24 24 C 1.37696 * 120.55575 * 194.28754 * 23 20 11 25 25 C 1.38420 * 119.88997 * 179.81926 * 24 23 20 26 26 C 1.38336 * 119.90775 * 359.96563 * 25 24 23 27 27 C 1.37936 * 120.36027 * 0.13522 * 26 25 24 28 28 C 1.38782 * 117.02044 * 170.32470 * 9 7 2 29 29 H 0.96997 * 120.00035 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.58339 * 246.20406 * 15 14 12 31 31 H 1.09003 * 109.58063 * 6.62806 * 15 14 12 32 32 H 1.08999 * 109.63432 * 294.86935 * 16 15 14 33 33 H 1.08999 * 109.42919 * 174.72705 * 16 15 14 34 34 H 1.08995 * 109.46074 * 178.49164 * 17 16 15 35 35 H 1.08995 * 109.46048 * 58.52885 * 17 16 15 36 36 H 1.09008 * 109.49551 * 301.41879 * 18 17 16 37 37 H 1.08997 * 109.50003 * 181.31659 * 18 17 16 38 38 H 1.09001 * 109.58332 * 353.36762 * 19 14 12 39 39 H 1.08997 * 109.58605 * 113.79762 * 19 14 12 40 40 H 1.08001 * 120.05405 * 359.84250 * 24 23 20 41 41 H 1.08006 * 120.04608 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.81828 * 180.11498 * 26 25 24 43 43 H 1.08001 * 119.95182 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6177 0.0000 4 1 3.7063 1.3464 -0.0006 5 1 1.8875 2.3963 -1.2125 6 1 1.8875 2.3965 1.2125 7 6 2.0082 -1.2053 0.0005 8 1 3.0332 -1.2371 -0.3379 9 7 1.3939 -2.3470 0.4232 10 7 0.1545 -2.2089 1.0235 11 6 -0.3894 -3.0923 1.8098 12 6 -1.7020 -2.8423 2.4063 13 8 -2.7038 -2.8924 1.7164 14 7 -1.8020 -2.5564 3.7196 15 6 -0.6194 -2.6112 4.5898 16 6 -0.4914 -1.2686 5.3254 17 6 -1.7996 -0.9701 6.0614 18 6 -2.9421 -0.8575 5.0495 19 6 -3.0968 -2.1900 4.3096 20 16 0.4731 -4.5965 2.1488 21 8 1.1079 -4.4274 3.4088 22 8 -0.4283 -5.6569 1.8620 23 6 1.7583 -4.6838 0.9419 24 6 2.4392 -5.8614 0.7283 25 6 3.4421 -5.9154 -0.2243 26 6 3.7568 -4.7865 -0.9592 27 6 3.0783 -3.6045 -0.7465 28 6 2.0662 -3.5417 0.2070 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7354 -3.4179 5.3135 31 1 0.2711 -2.7847 3.9856 32 1 -0.2893 -0.4748 4.6063 33 1 0.3258 -1.3255 6.0444 34 1 -1.7035 -0.0312 6.6065 35 1 -2.0139 -1.7766 6.7627 36 1 -2.7168 -0.0675 4.3329 37 1 -3.8691 -0.6218 5.5721 38 1 -3.8414 -2.0855 3.5204 39 1 -3.4106 -2.9631 5.0110 40 1 2.1909 -6.7416 1.3028 41 1 3.9780 -6.8377 -0.3936 42 1 4.5382 -4.8307 -1.7033 43 1 3.3297 -2.7270 -1.3237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065183239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = 3.125302 kcal Electronic energy + Delta-G solvation = -32157.618296 eV Core-core repulsion = 27911.311530 eV Total energy + Delta-G solvation = -4246.306767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -39.74406 -39.50025 -37.16149 -36.87862 -36.47134 -35.39609 -33.59058 -32.63289 -32.15072 -31.03612 -30.70006 -29.14130 -26.30396 -25.00589 -24.16753 -22.85962 -22.80714 -21.42726 -20.61964 -19.25372 -19.07501 -18.01009 -17.72902 -17.18424 -16.45253 -15.80504 -15.44272 -15.33431 -14.92524 -14.67520 -14.52386 -14.32242 -14.15537 -13.90213 -13.75210 -13.62051 -13.41124 -13.09736 -12.50829 -12.47183 -12.34957 -12.16438 -12.02317 -11.85114 -11.58181 -11.52567 -11.47850 -11.32248 -11.02752 -10.97176 -10.77427 -10.64832 -10.41558 -10.35827 -10.20339 -10.03802 -9.70272 -9.19947 -9.00223 -8.72405 -8.25849 -7.66801 -6.87181 -4.46469 0.55335 1.05884 1.43719 2.40388 2.67382 2.92892 2.97188 3.00210 3.34268 3.40693 3.56555 3.84146 3.88134 3.97624 4.57338 4.88697 4.93002 5.01890 5.04562 5.18729 5.23612 5.29766 5.34927 5.50454 5.52682 5.59224 5.69585 5.72677 5.78743 5.93090 5.98960 6.09566 6.11516 6.12993 6.19790 6.25511 6.32542 6.37945 6.51096 6.53562 6.72115 6.85347 6.92603 7.18128 7.36319 7.74846 8.08974 8.52169 8.66558 8.95265 10.07546 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.005836 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.205455 B = 4796.726998 C = 6953.891787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.050 3.950 3 Si 0.929 3.071 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.133 0.867 9 N -0.227 5.227 10 N -0.016 5.016 11 C -0.622 4.622 12 C 0.631 3.369 13 O -0.522 6.522 14 N -0.608 5.608 15 C 0.088 3.912 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.114 3.886 20 S 2.547 3.453 21 O -0.935 6.935 22 O -0.947 6.947 23 C -0.707 4.707 24 C 0.009 3.991 25 C -0.187 4.187 26 C -0.048 4.048 27 C -0.154 4.154 28 C 0.202 3.798 29 H 0.281 0.719 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 -1.721 6.049 7.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.150 0.850 9 N -0.011 5.011 10 N 0.155 4.845 11 C -0.880 4.880 12 C 0.416 3.584 13 O -0.396 6.396 14 N -0.343 5.343 15 C -0.034 4.034 16 C -0.171 4.171 17 C -0.156 4.156 18 C -0.173 4.173 19 C -0.008 4.008 20 S 2.726 3.274 21 O -0.931 6.931 22 O -0.943 6.943 23 C -0.802 4.802 24 C -0.011 4.011 25 C -0.208 4.208 26 C -0.067 4.067 27 C -0.177 4.177 28 C 0.092 3.908 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.666 -1.392 6.059 6.764 hybrid contribution 0.710 0.552 -0.630 1.098 sum 3.376 -0.840 5.429 6.448 Atomic orbital electron populations 1.70119 1.06579 1.29082 1.32659 1.25548 0.95362 1.00395 0.95535 0.85831 0.80081 0.80043 0.78798 1.18289 1.19838 1.19547 1.20139 0.97123 0.82030 1.47284 0.84973 1.44848 1.09685 1.04547 1.42037 1.75156 0.91644 1.20061 0.97661 1.33511 1.14155 1.20745 1.19633 1.16219 0.85804 0.75555 0.80844 1.90732 1.37501 1.50324 1.61021 1.47923 1.09776 1.68973 1.07664 1.22298 0.89243 0.97403 0.94490 1.21959 0.97569 0.97932 0.99686 1.21523 0.95000 1.01482 0.97588 1.21921 0.98836 0.97921 0.98583 1.21574 0.85533 0.95832 0.97897 1.03066 0.74591 0.74603 0.75099 1.93535 1.76320 1.85334 1.37919 1.93546 1.62825 1.53270 1.84670 1.29386 1.24422 1.01240 1.25199 1.20232 0.92143 0.93955 0.94724 1.20944 1.01081 0.98987 0.99795 1.21099 0.96857 0.92077 0.96695 1.21020 0.97815 0.99482 0.99413 1.17927 0.93414 0.85282 0.94148 0.90775 0.91112 0.87325 0.91133 0.90754 0.91958 0.91874 0.91269 0.90958 0.88941 0.91596 0.85490 0.85633 0.85532 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.09 11.68 55.51 0.65 -18.44 16 2 C 0.05 1.16 5.26 -17.46 -0.09 1.06 16 3 Si 0.93 17.20 29.60 -169.99 -5.03 12.17 16 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.33 -7.66 8.94 -15.19 -0.14 -7.79 16 8 H 0.13 2.66 6.15 -52.49 -0.32 2.34 16 9 N -0.23 -5.47 3.68 -9.68 -0.04 -5.50 16 10 N -0.02 -0.42 8.44 32.68 0.28 -0.15 16 11 C -0.62 -15.18 5.35 -15.00 -0.08 -15.26 16 12 C 0.63 15.13 7.36 -13.01 -0.10 15.03 16 13 O -0.52 -13.84 16.55 5.16 0.09 -13.75 16 14 N -0.61 -11.90 2.97 -174.16 -0.52 -12.41 16 15 C 0.09 1.56 5.68 -3.48 -0.02 1.54 16 16 C -0.13 -1.95 6.10 -26.39 -0.16 -2.12 16 17 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 18 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 19 C 0.11 1.80 6.42 -3.70 -0.02 1.77 16 20 S 2.55 56.50 5.21 -107.50 -0.56 55.94 16 21 O -0.94 -20.02 14.90 -57.12 -0.85 -20.87 16 22 O -0.95 -22.57 17.90 -57.12 -1.02 -23.59 16 23 C -0.71 -14.78 5.86 -39.40 -0.23 -15.01 16 24 C 0.01 0.16 9.75 -39.71 -0.39 -0.23 16 25 C -0.19 -2.76 10.06 -39.48 -0.40 -3.16 16 26 C -0.05 -0.70 10.02 -39.66 -0.40 -1.10 16 27 C -0.15 -2.78 9.03 -39.34 -0.36 -3.13 16 28 C 0.20 4.36 6.42 -83.98 -0.54 3.82 16 29 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.11 2.17 3.78 -51.93 -0.20 1.97 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.56 7.04 -51.93 -0.37 1.20 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 41 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.14 2.34 6.33 -52.49 -0.33 2.01 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -31.95 361.35 -9.80 -41.75 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.00 Total: 7.49 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -3.23 Total: -28.07 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.37 Total: -36.51 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -1.79 Total: -58.21 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 56.50 SS G_CDS: -0.56 Total: 55.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.95 -9.80 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.876 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds