Wall clock time and date at job start Tue Mar 31 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31232 * 1 3 3 Si 1.86797 * 120.00119 * 2 1 4 4 H 1.48499 * 109.47376 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46693 * 300.00068 * 3 2 1 6 6 H 1.48502 * 109.47121 * 59.99579 * 3 2 1 7 7 C 1.39173 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99797 * 158.78423 * 7 2 1 9 9 N 1.36356 * 119.99974 * 339.05580 * 7 2 1 10 10 N 1.38401 * 117.02267 * 350.58710 * 9 7 2 11 11 C 1.30172 * 124.64828 * 200.74738 * 10 9 7 12 12 C 1.46334 * 120.34049 * 179.34514 * 11 10 9 13 13 O 1.21737 * 120.00409 * 72.63058 * 12 11 10 14 14 N 1.34772 * 119.99985 * 252.63484 * 12 11 10 15 15 C 1.46932 * 120.63196 * 354.43459 * 14 12 11 16 16 C 1.53625 * 108.54341 * 126.36952 * 15 14 12 17 17 C 1.53039 * 109.24153 * 54.85895 * 16 15 14 18 18 C 1.53042 * 109.53975 * 298.50989 * 17 16 15 19 19 C 1.46934 * 120.63247 * 174.71781 * 14 12 11 20 20 S 1.76674 * 119.31655 * 359.31905 * 11 10 9 21 21 O 1.42096 * 106.67350 * 98.79758 * 20 11 10 22 22 O 1.42105 * 106.67453 * 232.44567 * 20 11 10 23 23 C 1.76521 * 105.45041 * 345.62280 * 20 11 10 24 24 C 1.37696 * 120.55575 * 194.28754 * 23 20 11 25 25 C 1.38420 * 119.88997 * 179.81926 * 24 23 20 26 26 C 1.38336 * 119.90775 * 359.96563 * 25 24 23 27 27 C 1.37936 * 120.36027 * 0.13522 * 26 25 24 28 28 C 1.38782 * 117.02044 * 170.32470 * 9 7 2 29 29 H 0.96997 * 120.00035 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.58339 * 246.20406 * 15 14 12 31 31 H 1.09003 * 109.58063 * 6.62806 * 15 14 12 32 32 H 1.08999 * 109.63432 * 294.86935 * 16 15 14 33 33 H 1.08999 * 109.42919 * 174.72705 * 16 15 14 34 34 H 1.08995 * 109.46074 * 178.49164 * 17 16 15 35 35 H 1.08995 * 109.46048 * 58.52885 * 17 16 15 36 36 H 1.09008 * 109.49551 * 301.41879 * 18 17 16 37 37 H 1.08997 * 109.50003 * 181.31659 * 18 17 16 38 38 H 1.09001 * 109.58332 * 353.36762 * 19 14 12 39 39 H 1.08997 * 109.58605 * 113.79762 * 19 14 12 40 40 H 1.08001 * 120.05405 * 359.84250 * 24 23 20 41 41 H 1.08006 * 120.04608 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.81828 * 180.11498 * 26 25 24 43 43 H 1.08001 * 119.95182 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6177 0.0000 4 1 3.7063 1.3464 -0.0006 5 1 1.8875 2.3963 -1.2125 6 1 1.8875 2.3965 1.2125 7 6 2.0082 -1.2053 0.0005 8 1 3.0332 -1.2371 -0.3379 9 7 1.3939 -2.3470 0.4232 10 7 0.1545 -2.2089 1.0235 11 6 -0.3894 -3.0923 1.8098 12 6 -1.7020 -2.8423 2.4063 13 8 -2.7038 -2.8924 1.7164 14 7 -1.8020 -2.5564 3.7196 15 6 -0.6194 -2.6112 4.5898 16 6 -0.4914 -1.2686 5.3254 17 6 -1.7996 -0.9701 6.0614 18 6 -2.9421 -0.8575 5.0495 19 6 -3.0968 -2.1900 4.3096 20 16 0.4731 -4.5965 2.1488 21 8 1.1079 -4.4274 3.4088 22 8 -0.4283 -5.6569 1.8620 23 6 1.7583 -4.6838 0.9419 24 6 2.4392 -5.8614 0.7283 25 6 3.4421 -5.9154 -0.2243 26 6 3.7568 -4.7865 -0.9592 27 6 3.0783 -3.6045 -0.7465 28 6 2.0662 -3.5417 0.2070 29 1 -0.4850 0.8400 -0.0004 30 1 -0.7354 -3.4179 5.3135 31 1 0.2711 -2.7847 3.9856 32 1 -0.2893 -0.4748 4.6063 33 1 0.3258 -1.3255 6.0444 34 1 -1.7035 -0.0312 6.6065 35 1 -2.0139 -1.7766 6.7627 36 1 -2.7168 -0.0675 4.3329 37 1 -3.8691 -0.6218 5.5721 38 1 -3.8414 -2.0855 3.5204 39 1 -3.4106 -2.9631 5.0110 40 1 2.1909 -6.7416 1.3028 41 1 3.9780 -6.8377 -0.3936 42 1 4.5382 -4.8307 -1.7033 43 1 3.3297 -2.7270 -1.3237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065183239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:46 Heat of formation + Delta-G solvation = -19.688341 kcal Electronic energy + Delta-G solvation = -32158.607570 eV Core-core repulsion = 27911.311530 eV Total energy + Delta-G solvation = -4247.296041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.30990 -41.02818 -38.63517 -38.53568 -38.08368 -37.13830 -35.28110 -34.14252 -33.64031 -32.40975 -32.00940 -30.67324 -27.89989 -26.56021 -25.59589 -24.26255 -24.13204 -22.92280 -22.04814 -20.74647 -20.63689 -19.59188 -19.31186 -18.78511 -18.02142 -17.45388 -17.12971 -16.99253 -16.35201 -16.18361 -15.90304 -15.70898 -15.46686 -15.32784 -15.20347 -15.09521 -14.73417 -14.50246 -14.05676 -13.97062 -13.84087 -13.68831 -13.54569 -13.36686 -13.31965 -13.05286 -12.97366 -12.82009 -12.44868 -12.26531 -12.06058 -11.91668 -11.80294 -11.78449 -11.57890 -11.51099 -11.30654 -10.78988 -10.43832 -10.39816 -9.75248 -9.24831 -8.57896 -6.22903 -1.08995 -0.46304 0.00461 0.80540 1.06130 1.40164 1.49053 1.58327 1.69497 1.77260 2.00671 2.25215 2.33949 2.50577 2.89067 3.42808 3.57769 3.63771 3.82164 3.92759 3.95694 4.04681 4.09453 4.14379 4.23402 4.29088 4.36834 4.49539 4.58356 4.62959 4.78910 4.83879 4.87873 4.89755 4.99680 5.02190 5.09598 5.15319 5.19395 5.23767 5.39141 5.41632 5.53410 5.65283 5.88705 6.14551 6.40909 6.82197 6.97222 7.28279 8.38421 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.008650 B = 0.005836 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.205455 B = 4796.726998 C = 6953.891787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.004 3.996 3 Si 1.001 2.999 4 H -0.235 1.235 5 H -0.270 1.270 6 H -0.280 1.280 7 C -0.343 4.343 8 H 0.159 0.841 9 N -0.239 5.239 10 N -0.058 5.058 11 C -0.664 4.664 12 C 0.618 3.382 13 O -0.574 6.574 14 N -0.602 5.602 15 C 0.077 3.923 16 C -0.130 4.130 17 C -0.111 4.111 18 C -0.128 4.128 19 C 0.101 3.899 20 S 2.556 3.444 21 O -0.937 6.937 22 O -0.977 6.977 23 C -0.717 4.717 24 C -0.015 4.015 25 C -0.156 4.156 26 C -0.030 4.030 27 C -0.162 4.162 28 C 0.164 3.836 29 H 0.279 0.721 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.641 -2.503 6.381 10.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.157 1.157 5 H -0.195 1.195 6 H -0.205 1.205 7 C -0.476 4.476 8 H 0.176 0.824 9 N -0.026 5.026 10 N 0.110 4.890 11 C -0.918 4.918 12 C 0.403 3.597 13 O -0.452 6.452 14 N -0.335 5.335 15 C -0.045 4.045 16 C -0.168 4.168 17 C -0.149 4.149 18 C -0.166 4.166 19 C -0.020 4.020 20 S 2.738 3.262 21 O -0.933 6.933 22 O -0.973 6.973 23 C -0.815 4.815 24 C -0.035 4.035 25 C -0.177 4.177 26 C -0.049 4.049 27 C -0.184 4.184 28 C 0.058 3.942 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.127 0.873 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.168 0.832 41 H 0.197 0.803 42 H 0.200 0.800 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.381 -2.239 6.461 9.353 hybrid contribution -0.143 0.567 -0.893 1.068 sum 6.239 -1.672 5.568 8.528 Atomic orbital electron populations 1.70288 1.08749 1.29699 1.34735 1.26626 0.95816 1.03880 0.94620 0.84782 0.79838 0.75173 0.78167 1.15740 1.19535 1.20524 1.20847 0.98135 0.82235 1.46417 0.82387 1.45054 1.09565 1.05746 1.42226 1.75009 0.92911 1.21720 0.99335 1.33456 1.14967 1.21811 1.21605 1.16577 0.85495 0.75456 0.82128 1.90657 1.38826 1.53220 1.62492 1.48120 1.11717 1.67063 1.06619 1.22506 0.87680 1.00027 0.94248 1.21964 1.00309 0.95088 0.99445 1.21533 0.92521 1.03618 0.97196 1.21913 1.01229 0.95134 0.98281 1.21940 0.83546 0.98532 0.97951 1.02578 0.74608 0.73569 0.75492 1.93510 1.76143 1.85210 1.38475 1.93494 1.64188 1.54306 1.85329 1.29396 1.24189 1.02734 1.25142 1.20807 0.92892 0.93470 0.96297 1.21663 0.98572 1.00941 0.96520 1.21777 0.96394 0.90243 0.96457 1.21417 0.96870 1.01678 0.98457 1.18489 0.94819 0.84963 0.95904 0.91079 0.88942 0.89917 0.93916 0.88336 0.89533 0.89471 0.93855 0.87338 0.91078 0.88553 0.83224 0.80345 0.80049 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.33 11.68 21.70 0.25 -43.08 16 2 C 0.00 0.21 5.26 85.01 0.45 0.65 16 3 Si 1.00 35.57 29.60 68.60 2.03 37.60 16 4 H -0.24 -7.34 7.11 99.48 0.71 -6.63 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.28 -10.25 7.11 99.48 0.71 -9.54 16 7 C -0.34 -16.05 8.94 84.21 0.75 -15.29 16 8 H 0.16 6.20 6.15 -2.91 -0.02 6.18 16 9 N -0.24 -11.98 3.68 -184.53 -0.68 -12.66 16 10 N -0.06 -3.20 8.44 -50.52 -0.43 -3.63 16 11 C -0.66 -35.18 5.35 87.05 0.47 -34.71 16 12 C 0.62 32.45 7.36 86.35 0.64 33.08 16 13 O -0.57 -33.59 16.55 -4.47 -0.07 -33.66 16 14 N -0.60 -25.19 2.97 -823.11 -2.44 -27.63 16 15 C 0.08 2.85 5.68 86.51 0.49 3.34 16 16 C -0.13 -3.83 6.10 30.82 0.19 -3.65 16 17 C -0.11 -2.49 5.88 30.62 0.18 -2.31 16 18 C -0.13 -3.30 6.08 30.67 0.19 -3.12 16 19 C 0.10 3.33 6.42 86.36 0.55 3.89 16 20 S 2.56 119.56 5.21 -56.49 -0.29 119.26 16 21 O -0.94 -41.97 14.90 -128.05 -1.91 -43.87 16 22 O -0.98 -49.30 17.90 -128.05 -2.29 -51.60 16 23 C -0.72 -30.12 5.86 22.39 0.13 -29.99 16 24 C -0.02 -0.49 9.75 22.18 0.22 -0.27 16 25 C -0.16 -3.74 10.06 22.34 0.22 -3.52 16 26 C -0.03 -0.71 10.02 22.22 0.22 -0.49 16 27 C -0.16 -5.37 9.03 22.43 0.20 -5.17 16 28 C 0.16 7.12 6.42 38.52 0.25 7.36 16 29 H 0.28 14.05 8.30 -92.71 -0.77 13.28 16 30 H 0.09 2.91 8.14 -2.39 -0.02 2.90 16 31 H 0.08 3.53 3.78 -2.39 -0.01 3.52 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.63 7.04 -2.39 -0.02 2.61 16 39 H 0.10 2.54 8.14 -2.39 -0.02 2.53 16 40 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 41 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 43 H 0.16 4.66 6.33 -2.91 -0.02 4.64 16 Total: -1.00 -79.74 361.35 0.38 -79.36 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 1.06 Total: 30.09 kcal Atomic # 6 Polarization: -55.33 SS G_CDS: 5.15 Total: -50.18 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -3.29 Total: -87.00 kcal Atomic # 8 Polarization: -124.86 SS G_CDS: -4.27 Total: -129.13 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 16 Polarization: 119.56 SS G_CDS: -0.29 Total: 119.26 kcal Total: -79.74 0.38 -79.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.670 kcal (2) G-P(sol) polarization free energy of solvation -79.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds