Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38335 * 119.81977 * 2 1 4 4 C 1.38424 * 119.90480 * 180.16970 * 3 2 1 5 5 C 1.37693 * 119.89234 * 359.46698 * 4 3 2 6 6 C 1.39091 * 120.71724 * 0.71050 * 5 4 3 7 7 C 1.37941 * 119.82178 * 179.97438 * 2 1 3 8 8 N 1.38783 * 121.22834 * 179.05828 * 6 5 4 9 9 C 1.36361 * 117.03900 * 200.46736 * 8 6 5 10 10 H 1.08000 * 119.99969 * 5.91988 * 9 8 6 11 11 C 1.39167 * 119.99823 * 185.92007 * 9 8 6 12 12 N 1.31241 * 120.00139 * 354.77984 * 11 9 8 13 13 Si 1.86798 * 119.99923 * 174.78275 * 11 9 8 14 14 H 1.48502 * 109.47246 * 59.99706 * 13 11 9 15 15 H 1.48500 * 109.47098 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46996 * 299.99794 * 13 11 9 17 17 N 1.38409 * 125.92407 * 20.46701 * 8 6 5 18 18 C 1.30171 * 124.63347 * 339.09812 * 17 8 6 19 19 C 1.46337 * 120.33907 * 180.63579 * 18 17 8 20 20 O 1.21728 * 119.99823 * 303.67069 * 19 18 17 21 21 N 1.34779 * 119.99685 * 123.66631 * 19 18 17 22 22 C 1.47022 * 125.65316 * 4.72386 * 21 19 18 23 23 C 1.54312 * 107.27634 * 180.96449 * 22 21 19 24 24 C 1.55152 * 102.86475 * 22.52523 * 23 22 21 25 25 C 1.47430 * 125.64624 * 185.02595 * 21 19 18 26 26 S 1.76517 * 120.56077 * 180.48157 * 5 4 3 27 27 O 1.42097 * 106.67779 * 279.32513 * 26 5 4 28 28 O 1.42101 * 106.67239 * 52.92801 * 26 5 4 29 29 H 1.09007 * 109.47381 * 89.99959 * 1 2 3 30 30 H 1.09003 * 109.46981 * 209.99606 * 1 2 3 31 31 H 1.09004 * 109.47334 * 329.99653 * 1 2 3 32 32 H 1.07995 * 120.04807 * 359.90569 * 3 2 1 33 33 H 1.08001 * 120.05308 * 179.73793 * 4 3 2 34 34 H 1.07998 * 119.94695 * 359.97438 * 7 2 1 35 35 H 0.96995 * 119.99904 * 185.00562 * 12 11 9 36 36 H 1.09002 * 109.87711 * 300.50964 * 22 21 19 37 37 H 1.09005 * 109.87911 * 61.67257 * 22 21 19 38 38 H 1.09003 * 110.92127 * 264.10608 * 23 22 21 39 39 H 1.09002 * 110.58691 * 140.78836 * 23 22 21 40 40 H 1.09004 * 111.00238 * 206.23027 * 24 23 22 41 41 H 1.08998 * 111.00345 * 82.37491 * 24 23 22 42 42 H 1.09007 * 110.36581 * 274.67805 * 25 21 19 43 43 H 1.08994 * 110.36466 * 36.88654 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.2002 0.0000 4 6 3.5791 1.2022 -0.0036 5 6 4.2671 0.0095 0.0040 6 6 3.5864 -1.2034 0.0004 7 6 2.1929 -1.1967 0.0005 8 7 4.2691 -2.4116 -0.0115 9 6 3.5808 -3.5084 -0.4390 10 1 2.5835 -3.3981 -0.8386 11 6 4.1634 -4.7698 -0.3604 12 7 5.4107 -4.8934 0.0286 13 14 3.1701 -6.2869 -0.8085 14 1 2.7221 -6.1861 -2.2207 15 1 4.0137 -7.4977 -0.6425 16 1 1.9849 -6.3831 0.0811 17 7 5.5852 -2.6045 0.3711 18 6 6.4843 -1.6649 0.4284 19 6 7.8553 -1.9774 0.8335 20 8 8.0655 -2.5168 1.9043 21 7 8.8851 -1.6681 0.0209 22 6 8.7845 -0.9319 -1.2478 23 6 10.2077 -0.8368 -1.8366 24 6 10.9435 -2.0203 -1.1545 25 6 10.2983 -2.0174 0.2539 26 16 6.0322 -0.0083 0.0124 27 8 6.4485 0.2032 -1.3296 28 8 6.4430 0.8120 1.0975 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6527 2.1342 -0.0015 33 1 4.1185 2.1379 -0.0078 34 1 1.6492 -2.1298 0.0014 35 1 5.8393 -5.7634 0.0141 36 1 8.1313 -1.4678 -1.9365 37 1 8.3932 0.0691 -1.0655 38 1 10.6755 0.1117 -1.5729 39 1 10.1845 -0.9690 -2.9183 40 1 12.0152 -1.8310 -1.0936 41 1 10.7425 -2.9570 -1.6743 42 1 10.7745 -1.2692 0.8878 43 1 10.3749 -3.0043 0.7101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065183306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = 11.131391 kcal Electronic energy + Delta-G solvation = -31799.450892 eV Core-core repulsion = 27553.491295 eV Total energy + Delta-G solvation = -4245.959597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.72696 -39.40060 -37.32887 -36.81251 -36.40428 -35.35758 -33.45685 -32.78794 -32.05146 -31.26646 -29.21764 -28.74950 -27.16849 -25.70390 -24.61283 -22.92248 -22.18814 -21.03490 -20.70783 -19.58283 -18.93618 -17.88993 -17.59428 -17.01247 -16.40293 -16.09335 -15.59884 -15.43292 -14.94342 -14.81915 -14.45827 -14.06215 -13.83695 -13.75981 -13.71888 -13.27831 -13.22960 -13.03793 -12.57357 -12.30021 -12.13772 -12.03453 -11.94154 -11.93192 -11.79298 -11.59469 -11.48811 -11.38424 -11.25236 -11.07681 -10.98712 -10.76260 -10.69015 -10.55965 -10.16664 -9.98351 -9.66900 -9.16550 -8.79910 -8.61431 -8.18049 -7.66112 -6.70468 -4.48207 0.63334 1.07194 1.44460 2.44428 2.73371 2.96157 2.98076 2.99111 3.45826 3.48746 3.61988 3.81266 3.91265 4.01083 4.64273 4.71723 4.81897 4.89986 5.00930 5.07578 5.21850 5.31615 5.44588 5.52404 5.55931 5.59233 5.65631 5.69121 5.71558 5.85202 5.91681 5.92600 6.05530 6.15204 6.19511 6.20404 6.21334 6.36464 6.38601 6.45917 6.75405 6.78298 6.86284 7.19923 7.36933 7.90882 8.12087 8.56050 8.75881 9.01957 10.15079 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.005331 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.886035 B = 5251.062888 C = 7591.893156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.017 4.017 3 C -0.186 4.186 4 C 0.013 3.987 5 C -0.712 4.712 6 C 0.206 3.794 7 C -0.157 4.157 8 N -0.236 5.236 9 C -0.317 4.317 10 H 0.132 0.868 11 C 0.037 3.963 12 N -0.759 5.759 13 Si 0.939 3.061 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.264 1.264 17 N 0.009 4.991 18 C -0.630 4.630 19 C 0.647 3.353 20 O -0.523 6.523 21 N -0.623 5.623 22 C 0.083 3.917 23 C -0.129 4.129 24 C -0.133 4.133 25 C 0.110 3.890 26 S 2.548 3.452 27 O -0.939 6.939 28 O -0.950 6.950 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.280 0.720 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 5.865 -4.966 7.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.019 4.019 3 C -0.207 4.207 4 C -0.007 4.007 5 C -0.807 4.807 6 C 0.097 3.903 7 C -0.180 4.180 8 N -0.021 5.021 9 C -0.451 4.451 10 H 0.149 0.851 11 C -0.179 4.179 12 N -0.388 5.388 13 Si 0.762 3.238 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.188 1.188 17 N 0.179 4.821 18 C -0.888 4.888 19 C 0.433 3.567 20 O -0.396 6.396 21 N -0.360 5.360 22 C -0.040 4.040 23 C -0.167 4.167 24 C -0.171 4.171 25 C -0.012 4.012 26 S 2.728 3.272 27 O -0.935 6.935 28 O -0.946 6.946 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.096 5.181 -4.208 6.675 hybrid contribution -0.989 -0.503 -0.117 1.116 sum -1.085 4.678 -4.324 6.462 Atomic orbital electron populations 1.20868 0.90947 1.02962 1.02560 1.19867 0.95834 0.92696 0.93493 1.20813 0.93465 0.97501 1.08899 1.20207 0.94682 0.94634 0.91167 1.29356 1.24260 0.98502 1.28587 1.17958 0.92982 0.85010 0.94346 1.20908 0.91453 0.98656 1.06991 1.45209 1.04422 1.05341 1.47136 1.20175 1.01260 0.82898 1.40743 0.85080 1.25667 0.96324 0.99628 0.96304 1.70133 1.09858 1.25816 1.33015 0.85795 0.79386 0.79090 0.79536 1.19011 1.19921 1.18843 1.75680 0.86173 1.20679 0.99525 1.33413 1.02037 1.18306 1.35018 1.15659 0.81065 0.77354 0.82601 1.90728 1.84618 1.42232 1.22063 1.48272 1.06903 1.58019 1.22802 1.22539 0.98165 0.97523 0.85798 1.22622 0.94494 0.98863 1.00678 1.22802 0.99592 0.99303 0.95441 1.22176 0.80585 1.01415 0.97061 1.03005 0.74103 0.74899 0.75217 1.93567 1.79732 1.84313 1.35873 1.93545 1.80849 1.66014 1.54215 0.90706 0.91144 0.91348 0.85627 0.85447 0.84018 0.90811 0.89912 0.90515 0.90579 0.89919 0.89924 0.90458 0.91529 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.00 36.00 0.36 -0.90 16 2 C -0.02 -0.27 5.87 -104.70 -0.61 -0.88 16 3 C -0.19 -2.84 9.71 -39.48 -0.38 -3.22 16 4 C 0.01 0.23 9.75 -39.71 -0.39 -0.16 16 5 C -0.71 -15.25 5.85 -39.46 -0.23 -15.48 16 6 C 0.21 4.57 6.41 -83.99 -0.54 4.03 16 7 C -0.16 -2.90 8.69 -39.28 -0.34 -3.24 16 8 N -0.24 -5.86 3.68 -9.68 -0.04 -5.90 16 9 C -0.32 -7.45 9.10 -15.19 -0.14 -7.59 16 10 H 0.13 2.67 5.97 -52.49 -0.31 2.35 16 11 C 0.04 0.88 5.48 -17.46 -0.10 0.78 16 12 N -0.76 -19.67 11.09 55.51 0.62 -19.05 16 13 Si 0.94 17.48 29.56 -169.99 -5.02 12.46 16 14 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 15 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 16 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 17 N 0.01 0.25 8.05 32.68 0.26 0.52 16 18 C -0.63 -16.01 6.35 -15.00 -0.10 -16.10 16 19 C 0.65 16.20 7.52 -13.00 -0.10 16.10 16 20 O -0.52 -14.41 17.41 5.16 0.09 -14.32 16 21 N -0.62 -12.76 3.33 -172.18 -0.57 -13.34 16 22 C 0.08 1.49 5.01 -3.07 -0.02 1.47 16 23 C -0.13 -1.64 6.95 -24.91 -0.17 -1.82 16 24 C -0.13 -1.61 7.08 -24.59 -0.17 -1.78 16 25 C 0.11 1.76 6.89 -2.53 -0.02 1.74 16 26 S 2.55 57.86 4.56 -107.50 -0.49 57.36 16 27 O -0.94 -20.72 14.14 -57.13 -0.81 -21.53 16 28 O -0.95 -22.71 17.90 -57.13 -1.02 -23.73 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 34 H 0.14 2.38 6.28 -52.49 -0.33 2.05 16 35 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.08 1.58 7.82 -51.93 -0.41 1.18 16 37 H 0.08 1.44 5.51 -51.93 -0.29 1.15 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -33.39 364.83 -9.54 -42.93 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.11 Total: 6.15 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.94 Total: -27.05 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.27 Total: -37.77 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -1.74 Total: -59.58 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.02 Total: 12.46 kcal Atomic # 16 Polarization: 57.86 SS G_CDS: -0.49 Total: 57.36 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.39 -9.54 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.063 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds