Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38335 * 119.81977 * 2 1 4 4 C 1.38424 * 119.90480 * 180.16970 * 3 2 1 5 5 C 1.37693 * 119.89234 * 359.46698 * 4 3 2 6 6 C 1.39091 * 120.71724 * 0.71050 * 5 4 3 7 7 C 1.37941 * 119.82178 * 179.97438 * 2 1 3 8 8 N 1.38783 * 121.22834 * 179.05828 * 6 5 4 9 9 C 1.36361 * 117.03900 * 200.46736 * 8 6 5 10 10 H 1.08000 * 119.99969 * 5.91988 * 9 8 6 11 11 C 1.39167 * 119.99823 * 185.92007 * 9 8 6 12 12 N 1.31241 * 120.00139 * 354.77984 * 11 9 8 13 13 Si 1.86798 * 119.99923 * 174.78275 * 11 9 8 14 14 H 1.48502 * 109.47246 * 59.99706 * 13 11 9 15 15 H 1.48500 * 109.47098 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46996 * 299.99794 * 13 11 9 17 17 N 1.38409 * 125.92407 * 20.46701 * 8 6 5 18 18 C 1.30171 * 124.63347 * 339.09812 * 17 8 6 19 19 C 1.46337 * 120.33907 * 180.63579 * 18 17 8 20 20 O 1.21728 * 119.99823 * 303.67069 * 19 18 17 21 21 N 1.34779 * 119.99685 * 123.66631 * 19 18 17 22 22 C 1.47022 * 125.65316 * 4.72386 * 21 19 18 23 23 C 1.54312 * 107.27634 * 180.96449 * 22 21 19 24 24 C 1.55152 * 102.86475 * 22.52523 * 23 22 21 25 25 C 1.47430 * 125.64624 * 185.02595 * 21 19 18 26 26 S 1.76517 * 120.56077 * 180.48157 * 5 4 3 27 27 O 1.42097 * 106.67779 * 279.32513 * 26 5 4 28 28 O 1.42101 * 106.67239 * 52.92801 * 26 5 4 29 29 H 1.09007 * 109.47381 * 89.99959 * 1 2 3 30 30 H 1.09003 * 109.46981 * 209.99606 * 1 2 3 31 31 H 1.09004 * 109.47334 * 329.99653 * 1 2 3 32 32 H 1.07995 * 120.04807 * 359.90569 * 3 2 1 33 33 H 1.08001 * 120.05308 * 179.73793 * 4 3 2 34 34 H 1.07998 * 119.94695 * 359.97438 * 7 2 1 35 35 H 0.96995 * 119.99904 * 185.00562 * 12 11 9 36 36 H 1.09002 * 109.87711 * 300.50964 * 22 21 19 37 37 H 1.09005 * 109.87911 * 61.67257 * 22 21 19 38 38 H 1.09003 * 110.92127 * 264.10608 * 23 22 21 39 39 H 1.09002 * 110.58691 * 140.78836 * 23 22 21 40 40 H 1.09004 * 111.00238 * 206.23027 * 24 23 22 41 41 H 1.08998 * 111.00345 * 82.37491 * 24 23 22 42 42 H 1.09007 * 110.36581 * 274.67805 * 25 21 19 43 43 H 1.08994 * 110.36466 * 36.88654 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.2002 0.0000 4 6 3.5791 1.2022 -0.0036 5 6 4.2671 0.0095 0.0040 6 6 3.5864 -1.2034 0.0004 7 6 2.1929 -1.1967 0.0005 8 7 4.2691 -2.4116 -0.0115 9 6 3.5808 -3.5084 -0.4390 10 1 2.5835 -3.3981 -0.8386 11 6 4.1634 -4.7698 -0.3604 12 7 5.4107 -4.8934 0.0286 13 14 3.1701 -6.2869 -0.8085 14 1 2.7221 -6.1861 -2.2207 15 1 4.0137 -7.4977 -0.6425 16 1 1.9849 -6.3831 0.0811 17 7 5.5852 -2.6045 0.3711 18 6 6.4843 -1.6649 0.4284 19 6 7.8553 -1.9774 0.8335 20 8 8.0655 -2.5168 1.9043 21 7 8.8851 -1.6681 0.0209 22 6 8.7845 -0.9319 -1.2478 23 6 10.2077 -0.8368 -1.8366 24 6 10.9435 -2.0203 -1.1545 25 6 10.2983 -2.0174 0.2539 26 16 6.0322 -0.0083 0.0124 27 8 6.4485 0.2032 -1.3296 28 8 6.4430 0.8120 1.0975 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6527 2.1342 -0.0015 33 1 4.1185 2.1379 -0.0078 34 1 1.6492 -2.1298 0.0014 35 1 5.8393 -5.7634 0.0141 36 1 8.1313 -1.4678 -1.9365 37 1 8.3932 0.0691 -1.0655 38 1 10.6755 0.1117 -1.5729 39 1 10.1845 -0.9690 -2.9183 40 1 12.0152 -1.8310 -1.0936 41 1 10.7425 -2.9570 -1.6743 42 1 10.7745 -1.2692 0.8878 43 1 10.3749 -3.0043 0.7101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065183306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -13.395949 kcal Electronic energy + Delta-G solvation = -31800.514477 eV Core-core repulsion = 27553.491295 eV Total energy + Delta-G solvation = -4247.023182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.30419 -40.98818 -38.85831 -38.51822 -38.09265 -37.14050 -35.20329 -34.25836 -33.58985 -32.68148 -30.76557 -30.08688 -28.41690 -27.33195 -26.22849 -24.40950 -23.62317 -22.39439 -22.07756 -21.19463 -20.61647 -19.54707 -19.22105 -18.68035 -17.98714 -17.48274 -17.33236 -17.14710 -16.62912 -16.35263 -15.90768 -15.56128 -15.31087 -15.25950 -15.20733 -14.59059 -14.48329 -14.32772 -14.06343 -13.88740 -13.63824 -13.49312 -13.37840 -13.32138 -13.23258 -13.15722 -13.03937 -12.87299 -12.72997 -12.43741 -12.20111 -12.17683 -12.08798 -11.75903 -11.70238 -11.59287 -11.42465 -10.79729 -10.38045 -10.16000 -9.79080 -9.28739 -8.45569 -6.30518 -1.06207 -0.49484 -0.03809 0.78810 1.09995 1.41681 1.51759 1.56138 1.73809 1.78904 2.01671 2.24633 2.33901 2.41703 2.90755 3.40287 3.51197 3.57725 3.64690 3.81505 3.88946 4.02133 4.08844 4.15982 4.24328 4.27143 4.45754 4.54011 4.62974 4.64174 4.79200 4.83390 4.87477 4.90445 4.95336 4.96557 5.05368 5.06983 5.14451 5.22968 5.26815 5.38437 5.47962 5.60691 5.87021 6.23229 6.39517 6.79732 6.98322 7.29655 8.40813 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.008984 B = 0.005331 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.886035 B = 5251.062888 C = 7591.893156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.004 4.004 3 C -0.159 4.159 4 C -0.008 4.008 5 C -0.725 4.725 6 C 0.169 3.831 7 C -0.165 4.165 8 N -0.248 5.248 9 C -0.326 4.326 10 H 0.161 0.839 11 C -0.015 4.015 12 N -0.805 5.805 13 Si 1.015 2.985 14 H -0.249 1.249 15 H -0.284 1.284 16 H -0.248 1.248 17 N -0.035 5.035 18 C -0.681 4.681 19 C 0.633 3.367 20 O -0.575 6.575 21 N -0.623 5.623 22 C 0.072 3.928 23 C -0.118 4.118 24 C -0.117 4.117 25 C 0.093 3.907 26 S 2.561 3.439 27 O -0.944 6.944 28 O -0.975 6.975 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.179 0.821 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.276 0.724 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 7.554 -6.864 11.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.006 4.006 3 C -0.179 4.179 4 C -0.028 4.028 5 C -0.823 4.823 6 C 0.063 3.937 7 C -0.187 4.187 8 N -0.036 5.036 9 C -0.460 4.460 10 H 0.178 0.822 11 C -0.226 4.226 12 N -0.436 5.436 13 Si 0.833 3.167 14 H -0.173 1.173 15 H -0.209 1.209 16 H -0.172 1.172 17 N 0.131 4.869 18 C -0.933 4.933 19 C 0.420 3.580 20 O -0.454 6.454 21 N -0.358 5.358 22 C -0.051 4.051 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.028 4.028 26 S 2.742 3.258 27 O -0.940 6.940 28 O -0.971 6.971 29 H 0.116 0.884 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.196 0.804 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.187 6.977 -6.142 9.826 hybrid contribution -0.384 -0.815 0.426 0.996 sum -3.571 6.162 -5.716 9.132 Atomic orbital electron populations 1.21024 0.86745 1.04890 1.04492 1.20527 0.98650 0.91360 0.90032 1.21513 0.92324 0.99735 1.04363 1.20770 0.96448 0.94255 0.91324 1.29365 1.23096 1.00043 1.29751 1.18514 0.94651 0.84493 0.96021 1.21284 0.89863 1.00928 1.06667 1.45468 1.04222 1.06649 1.47227 1.20975 1.02187 0.83070 1.39797 0.82203 1.26869 0.96973 1.02919 0.95835 1.70386 1.12191 1.26133 1.34874 0.84684 0.77746 0.74093 0.80142 1.17263 1.20880 1.17188 1.75543 0.87235 1.22159 1.01953 1.33426 1.02121 1.19350 1.38414 1.16035 0.82221 0.77136 0.82626 1.90642 1.85567 1.45057 1.24103 1.48471 1.07767 1.56896 1.22636 1.22736 1.01657 0.96038 0.84638 1.22704 0.90670 1.00391 1.01791 1.22820 1.01541 0.99032 0.92030 1.22604 0.78764 1.01145 1.00301 1.02406 0.74950 0.73723 0.74698 1.93539 1.80579 1.84207 1.35668 1.93494 1.82026 1.66550 1.55022 0.88433 0.90232 0.88589 0.80410 0.82986 0.82642 0.91301 0.92113 0.91710 0.88127 0.87462 0.85519 0.90632 0.89910 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 10.00 71.23 0.71 -1.06 16 2 C 0.00 -0.11 5.87 -19.91 -0.12 -0.23 16 3 C -0.16 -4.09 9.71 22.34 0.22 -3.87 16 4 C -0.01 -0.28 9.75 22.19 0.22 -0.07 16 5 C -0.73 -31.58 5.85 22.35 0.13 -31.45 16 6 C 0.17 7.58 6.41 38.51 0.25 7.83 16 7 C -0.16 -5.73 8.69 22.47 0.20 -5.54 16 8 N -0.25 -12.89 3.68 -184.54 -0.68 -13.57 16 9 C -0.33 -15.65 9.10 84.21 0.77 -14.88 16 10 H 0.16 6.35 5.97 -2.91 -0.02 6.33 16 11 C -0.01 -0.71 5.48 85.00 0.47 -0.24 16 12 N -0.80 -44.62 11.09 21.69 0.24 -44.38 16 13 Si 1.01 35.93 29.56 68.60 2.03 37.96 16 14 H -0.25 -8.07 7.11 99.48 0.71 -7.36 16 15 H -0.28 -10.33 7.11 99.48 0.71 -9.63 16 16 H -0.25 -8.08 7.11 99.48 0.71 -7.38 16 17 N -0.04 -2.06 8.05 -50.52 -0.41 -2.47 16 18 C -0.68 -37.79 6.35 87.05 0.55 -37.24 16 19 C 0.63 34.92 7.52 86.35 0.65 35.57 16 20 O -0.57 -35.11 17.41 -4.44 -0.08 -35.19 16 21 N -0.62 -27.59 3.33 -816.87 -2.72 -30.31 16 22 C 0.07 2.74 5.01 86.72 0.43 3.17 16 23 C -0.12 -2.87 6.95 31.78 0.22 -2.65 16 24 C -0.12 -2.67 7.08 31.98 0.23 -2.45 16 25 C 0.09 3.11 6.89 86.85 0.60 3.71 16 26 S 2.56 123.66 4.56 -56.49 -0.26 123.40 16 27 O -0.94 -44.17 14.14 -128.04 -1.81 -45.98 16 28 O -0.98 -49.53 17.90 -128.04 -2.29 -51.83 16 29 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.10 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.16 4.85 6.28 -2.91 -0.02 4.83 16 35 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.06 2.53 7.82 -2.39 -0.02 2.51 16 37 H 0.06 2.59 5.51 -2.38 -0.01 2.58 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 43 H 0.06 2.30 8.08 -2.39 -0.02 2.28 16 Total: -1.00 -84.07 364.83 0.60 -83.46 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 1.06 Total: 28.31 kcal Atomic # 6 Polarization: -54.91 SS G_CDS: 5.52 Total: -49.40 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -3.56 Total: -90.74 kcal Atomic # 8 Polarization: -128.81 SS G_CDS: -4.18 Total: -132.99 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Atomic # 16 Polarization: 123.66 SS G_CDS: -0.26 Total: 123.40 kcal Total: -84.07 0.60 -83.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065183306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.068 kcal (2) G-P(sol) polarization free energy of solvation -84.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds