Wall clock time and date at job start Tue Mar 31 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 119.99864 * 2 1 4 4 O 1.21612 * 120.00382 * 359.97438 * 3 2 1 5 5 C 1.47298 * 119.99731 * 180.02562 * 3 2 1 6 6 C 1.37958 * 126.80730 * 0.02739 * 5 3 2 7 7 N 1.34157 * 107.88765 * 179.97438 * 6 5 3 8 8 C 1.46500 * 125.16503 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46949 * 124.99707 * 8 7 6 10 10 H 1.07999 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00338 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99426 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47361 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47264 * 120.00115 * 13 11 9 16 16 H 1.48500 * 109.46969 * 239.99720 * 13 11 9 17 17 N 1.39779 * 109.67213 * 0.25995 * 7 6 5 18 18 C 1.31362 * 109.07415 * 359.54814 * 17 7 6 19 19 C 1.48296 * 126.50570 * 180.15717 * 18 17 7 20 20 C 1.39405 * 120.12440 * 325.32572 * 19 18 17 21 21 C 1.37992 * 119.89588 * 179.97438 * 20 19 18 22 22 C 1.38329 * 120.13470 * 359.97421 * 21 20 19 23 23 C 1.38400 * 120.24631 * 0.02562 * 22 21 20 24 24 Br 1.89098 * 119.94734 * 180.02562 * 23 22 21 25 25 C 1.38117 * 120.10011 * 359.78045 * 23 22 21 26 26 H 1.08997 * 109.46881 * 299.99939 * 1 2 3 27 27 H 1.09003 * 109.47283 * 59.99658 * 1 2 3 28 28 H 1.08995 * 109.46752 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99925 * 180.02562 * 2 1 3 30 30 H 1.07996 * 126.06021 * 359.97438 * 6 5 3 31 31 H 1.09000 * 109.46609 * 4.99886 * 8 7 6 32 32 H 1.09000 * 109.47175 * 244.99681 * 8 7 6 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.07999 * 120.05224 * 359.95761 * 20 19 18 35 35 H 1.08001 * 119.93089 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.88134 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.06636 * 180.25834 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5308 2.2204 -0.0005 5 6 3.6118 1.1672 -0.0006 6 6 4.4384 0.0626 -0.0017 7 7 5.7075 0.4976 -0.0024 8 6 6.8939 -0.3618 -0.0042 9 6 7.7777 0.0045 -1.1687 10 1 7.4851 0.7983 -1.8399 11 6 8.9599 -0.6739 -1.3769 12 7 9.3164 -1.6402 -0.5592 13 14 10.0557 -0.2194 -2.8198 14 1 9.4339 0.8927 -3.5826 15 1 11.3856 0.2082 -2.3160 16 1 10.2186 -1.3981 -3.7082 17 7 5.7259 1.8952 0.0041 18 6 4.4901 2.3408 -0.0008 19 6 4.0646 3.7614 0.0001 20 6 4.8105 4.7148 0.6915 21 6 4.4104 6.0354 0.6888 22 6 3.2717 6.4147 0.0011 23 6 2.5269 5.4730 -0.6873 24 35 0.9721 6.0009 -1.6252 25 6 2.9204 4.1491 -0.6945 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 4.1202 -0.9694 -0.0019 31 1 6.5875 -1.4040 -0.0944 32 1 7.4438 -0.2240 0.9268 33 1 10.1482 -2.1172 -0.7055 34 1 5.6998 4.4202 1.2288 35 1 4.9881 6.7746 1.2239 36 1 2.9626 7.4496 0.0013 37 1 2.3411 3.4153 -1.2353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065492165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:43 Heat of formation + Delta-G solvation = 64.038696 kcal Electronic energy + Delta-G solvation = -23376.227285 eV Core-core repulsion = 19780.257434 eV Total energy + Delta-G solvation = -3595.969851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.73711 -38.85290 -38.72715 -34.46800 -33.95853 -32.64398 -31.86000 -30.55640 -30.20669 -28.93455 -27.46823 -26.22589 -23.87919 -22.94785 -22.13036 -21.49941 -19.77173 -19.41363 -17.75119 -16.81921 -16.45944 -15.73965 -15.44576 -15.22924 -15.05452 -14.79280 -14.33264 -14.21464 -13.70297 -13.46883 -13.20950 -13.14406 -12.74985 -12.50652 -12.33034 -12.17740 -11.91959 -11.34164 -11.16587 -11.04476 -10.96505 -10.74588 -10.41318 -10.27542 -10.14458 -9.91558 -9.65133 -9.23892 -9.01297 -8.77178 -8.51612 -8.41878 -7.85435 -6.39696 -4.45705 1.11154 1.45163 1.78318 1.98763 2.71623 3.09538 3.14602 3.23174 3.30809 3.46343 3.68440 3.99354 4.20184 4.60576 4.89159 4.97352 5.06019 5.10295 5.17912 5.38319 5.44479 5.50408 5.58164 5.61975 5.80428 5.83342 5.90450 6.07816 6.32229 6.43153 6.49842 6.57165 6.73458 6.77893 6.90891 7.03475 7.44527 7.60890 7.66261 7.70254 8.22334 8.51450 8.62312 9.21564 10.69298 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003087 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.705012 B = 9067.263300 C =10537.577361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.740 5.740 3 C 0.597 3.403 4 O -0.542 6.542 5 C -0.313 4.313 6 C 0.101 3.899 7 N -0.308 5.308 8 C 0.249 3.751 9 C -0.534 4.534 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.893 5.893 13 Si 0.908 3.092 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.281 1.281 17 N -0.257 5.257 18 C 0.134 3.866 19 C -0.003 4.003 20 C -0.076 4.076 21 C -0.128 4.128 22 C -0.089 4.089 23 C -0.099 4.099 24 Br -0.062 7.062 25 C -0.029 4.029 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.398 0.602 30 H 0.177 0.823 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.269 0.731 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.572 8.145 1.543 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.391 5.391 3 C 0.387 3.613 4 O -0.421 6.421 5 C -0.329 4.329 6 C -0.054 4.054 7 N -0.084 5.084 8 C 0.133 3.867 9 C -0.572 4.572 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.531 5.531 13 Si 0.735 3.265 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.207 1.207 17 N -0.078 5.078 18 C -0.033 4.033 19 C -0.006 4.006 20 C -0.095 4.095 21 C -0.147 4.147 22 C -0.109 4.109 23 C -0.178 4.178 24 Br 0.024 6.976 25 C -0.049 4.049 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.194 0.806 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.035 9.133 1.235 18.495 hybrid contribution 0.483 -0.957 -0.438 1.158 sum -15.552 8.176 0.797 17.588 Atomic orbital electron populations 1.21446 0.79831 1.01693 1.02150 1.45643 1.07381 1.08597 1.77496 1.17292 0.85825 0.83322 0.74826 1.90718 1.69923 1.30419 1.51082 1.20927 0.92721 0.91967 1.27278 1.22909 0.85494 0.99043 0.97918 1.49267 1.06803 1.04150 1.48219 1.19970 0.79261 0.87481 1.00027 1.21233 1.05037 1.19852 1.11093 0.91042 1.24928 0.97329 0.94482 0.97075 1.69911 1.23935 1.22153 1.37056 0.86256 0.80081 0.78606 0.81545 1.19406 1.20533 1.20655 1.77469 1.18526 0.90054 1.21709 1.21574 0.89698 0.91944 1.00093 1.17631 0.95214 0.88794 0.99000 1.21393 0.98680 0.92421 0.97048 1.20967 0.96962 0.96026 1.00727 1.21103 0.94762 0.98757 0.96307 1.21541 0.96003 0.95977 1.04293 1.96624 1.34775 1.91386 1.74857 1.21545 0.93724 0.93885 0.95784 0.92457 0.92400 0.91100 0.76838 0.80640 0.92245 0.93034 0.92179 0.85022 0.85161 0.85442 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 10.70 59.85 0.64 1.51 16 2 N -0.74 -8.47 5.70 -68.22 -0.39 -8.86 16 3 C 0.60 9.33 7.68 -12.58 -0.10 9.23 16 4 O -0.54 -9.62 12.45 5.27 0.07 -9.55 16 5 C -0.31 -5.39 6.27 -102.95 -0.64 -6.04 16 6 C 0.10 1.66 10.89 -16.64 -0.18 1.48 16 7 N -0.31 -6.35 3.62 -62.03 -0.22 -6.58 16 8 C 0.25 5.73 6.21 -5.19 -0.03 5.69 16 9 C -0.53 -13.90 9.21 -34.44 -0.32 -14.22 16 10 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.89 13.29 55.43 0.74 -23.16 16 13 Si 0.91 20.51 29.54 -169.99 -5.02 15.48 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 N -0.26 -5.52 12.28 34.57 0.42 -5.10 16 18 C 0.13 2.59 6.94 -80.56 -0.56 2.03 16 19 C 0.00 -0.06 5.73 -104.91 -0.60 -0.66 16 20 C -0.08 -1.17 9.76 -39.24 -0.38 -1.56 16 21 C -0.13 -1.65 10.03 -39.64 -0.40 -2.05 16 22 C -0.09 -1.16 9.78 -39.49 -0.39 -1.54 16 23 C -0.10 -1.47 6.22 -39.57 -0.25 -1.72 16 24 Br -0.06 -0.81 33.69 -68.01 -2.29 -3.10 16 25 C -0.03 -0.48 7.51 -39.21 -0.29 -0.77 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.40 3.55 7.78 -40.82 -0.32 3.23 16 30 H 0.18 2.07 7.48 -52.49 -0.39 1.68 16 31 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 32 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.15 2.73 5.67 -52.49 -0.30 2.43 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -30.35 346.10 -9.01 -39.36 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -3.93 Total: 3.30 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -3.60 Total: -7.00 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.55 Total: -43.70 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -2.29 Total: -3.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.35 -9.01 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065492165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.397 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds