Wall clock time and date at job start Tue Mar 31 2020 05:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 119.99864 * 2 1 4 4 O 1.21612 * 120.00382 * 359.97438 * 3 2 1 5 5 C 1.47298 * 119.99731 * 180.02562 * 3 2 1 6 6 C 1.37958 * 126.80730 * 0.02739 * 5 3 2 7 7 N 1.34157 * 107.88765 * 179.97438 * 6 5 3 8 8 C 1.46500 * 125.16503 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46949 * 124.99707 * 8 7 6 10 10 H 1.07999 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00338 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99426 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47361 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47264 * 120.00115 * 13 11 9 16 16 H 1.48500 * 109.46969 * 239.99720 * 13 11 9 17 17 N 1.39779 * 109.67213 * 0.25995 * 7 6 5 18 18 C 1.31362 * 109.07415 * 359.54814 * 17 7 6 19 19 C 1.48296 * 126.50570 * 180.15717 * 18 17 7 20 20 C 1.39405 * 120.12440 * 325.32572 * 19 18 17 21 21 C 1.37992 * 119.89588 * 179.97438 * 20 19 18 22 22 C 1.38329 * 120.13470 * 359.97421 * 21 20 19 23 23 C 1.38400 * 120.24631 * 0.02562 * 22 21 20 24 24 Br 1.89098 * 119.94734 * 180.02562 * 23 22 21 25 25 C 1.38117 * 120.10011 * 359.78045 * 23 22 21 26 26 H 1.08997 * 109.46881 * 299.99939 * 1 2 3 27 27 H 1.09003 * 109.47283 * 59.99658 * 1 2 3 28 28 H 1.08995 * 109.46752 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99925 * 180.02562 * 2 1 3 30 30 H 1.07996 * 126.06021 * 359.97438 * 6 5 3 31 31 H 1.09000 * 109.46609 * 4.99886 * 8 7 6 32 32 H 1.09000 * 109.47175 * 244.99681 * 8 7 6 33 33 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 34 34 H 1.07999 * 120.05224 * 359.95761 * 20 19 18 35 35 H 1.08001 * 119.93089 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.88134 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.06636 * 180.25834 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5308 2.2204 -0.0005 5 6 3.6118 1.1672 -0.0006 6 6 4.4384 0.0626 -0.0017 7 7 5.7075 0.4976 -0.0024 8 6 6.8939 -0.3618 -0.0042 9 6 7.7777 0.0045 -1.1687 10 1 7.4851 0.7983 -1.8399 11 6 8.9599 -0.6739 -1.3769 12 7 9.3164 -1.6402 -0.5592 13 14 10.0557 -0.2194 -2.8198 14 1 9.4339 0.8927 -3.5826 15 1 11.3856 0.2082 -2.3160 16 1 10.2186 -1.3981 -3.7082 17 7 5.7259 1.8952 0.0041 18 6 4.4901 2.3408 -0.0008 19 6 4.0646 3.7614 0.0001 20 6 4.8105 4.7148 0.6915 21 6 4.4104 6.0354 0.6888 22 6 3.2717 6.4147 0.0011 23 6 2.5269 5.4730 -0.6873 24 35 0.9721 6.0009 -1.6252 25 6 2.9204 4.1491 -0.6945 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 1.9500 -0.8400 -0.0004 30 1 4.1202 -0.9694 -0.0019 31 1 6.5875 -1.4040 -0.0944 32 1 7.4438 -0.2240 0.9268 33 1 10.1482 -2.1172 -0.7055 34 1 5.6998 4.4202 1.2288 35 1 4.9881 6.7746 1.2239 36 1 2.9626 7.4496 0.0013 37 1 2.3411 3.4153 -1.2353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065492165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:42 Heat of formation + Delta-G solvation = 45.686993 kcal Electronic energy + Delta-G solvation = -23377.023074 eV Core-core repulsion = 19780.257434 eV Total energy + Delta-G solvation = -3596.765640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 363.032 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.13259 -40.08963 -39.87590 -35.77549 -35.49958 -34.15214 -33.09794 -31.93290 -31.54466 -30.09547 -29.03607 -27.33319 -25.52025 -24.22278 -23.32391 -22.86830 -21.00645 -20.74686 -19.08822 -18.62050 -17.72661 -17.14938 -16.59574 -16.56444 -16.43974 -16.01534 -15.73714 -15.62674 -14.90846 -14.78431 -14.41805 -14.34888 -14.19407 -13.86077 -13.59050 -13.55373 -13.02243 -12.94398 -12.77114 -12.45053 -12.35742 -12.23454 -11.95323 -11.76438 -11.58031 -11.22207 -10.92457 -10.78772 -10.63952 -10.07222 -9.73129 -9.65502 -9.24583 -8.37797 -6.50311 -0.08811 0.28313 0.65663 0.67664 1.33485 1.35304 1.39255 1.49709 1.64937 2.32447 2.42962 2.45632 2.76804 2.96100 3.35894 3.61402 3.97324 4.02900 4.14567 4.26428 4.35921 4.36522 4.51230 4.63599 4.68127 4.73250 4.84734 4.90145 5.01381 5.04197 5.16445 5.29804 5.47885 5.50942 5.55605 5.58336 5.77007 5.84351 6.03271 6.57845 6.63562 6.79539 7.20081 7.38494 8.70508 Molecular weight = 363.03amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.003087 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.705012 B = 9067.263300 C =10537.577361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.723 5.723 3 C 0.594 3.406 4 O -0.566 6.566 5 C -0.320 4.320 6 C 0.114 3.886 7 N -0.332 5.332 8 C 0.264 3.736 9 C -0.549 4.549 10 H 0.050 0.950 11 C 0.026 3.974 12 N -0.916 5.916 13 Si 0.965 3.035 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.269 1.269 17 N -0.304 5.304 18 C 0.129 3.871 19 C -0.033 4.033 20 C -0.087 4.087 21 C -0.116 4.116 22 C -0.079 4.079 23 C -0.110 4.110 24 Br -0.047 7.047 25 C -0.039 4.039 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.413 0.587 30 H 0.223 0.777 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.273 0.727 34 H 0.127 0.873 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.767 8.501 1.359 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.375 5.375 3 C 0.383 3.617 4 O -0.448 6.448 5 C -0.335 4.335 6 C -0.038 4.038 7 N -0.109 5.109 8 C 0.146 3.854 9 C -0.587 4.587 10 H 0.068 0.932 11 C -0.175 4.175 12 N -0.554 5.554 13 Si 0.789 3.211 14 H -0.203 1.203 15 H -0.200 1.200 16 H -0.194 1.194 17 N -0.124 5.124 18 C -0.039 4.039 19 C -0.036 4.036 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.189 4.189 24 Br 0.038 6.962 25 C -0.060 4.060 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.249 0.751 30 H 0.240 0.760 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.145 0.855 35 H 0.185 0.815 36 H 0.178 0.822 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.256 9.450 1.054 19.702 hybrid contribution 0.710 -0.994 -0.362 1.274 sum -16.546 8.456 0.692 18.595 Atomic orbital electron populations 1.21638 0.78101 1.04102 1.01467 1.45545 1.08436 1.07892 1.75623 1.17163 0.85163 0.84201 0.75137 1.90706 1.70061 1.31624 1.52366 1.21231 0.93888 0.91510 1.26911 1.23620 0.83704 1.01000 0.95523 1.48989 1.07384 1.03904 1.50589 1.19552 0.79847 0.88232 0.97732 1.21368 1.06147 1.19397 1.11831 0.93166 1.25603 0.98324 0.94403 0.99209 1.69966 1.24507 1.22760 1.38187 0.85400 0.78404 0.78334 0.78920 1.20262 1.19996 1.19359 1.77380 1.20146 0.90812 1.24099 1.22078 0.89618 0.93514 0.98660 1.17806 0.96381 0.88521 1.00847 1.21518 0.98528 0.93463 0.97179 1.21351 0.96838 0.95420 0.99860 1.21506 0.93949 0.99865 0.94629 1.21756 0.96831 0.95654 1.04689 1.96622 1.33943 1.90984 1.74616 1.21400 0.93630 0.94641 0.96290 0.93115 0.93115 0.87155 0.75146 0.76045 0.91147 0.95372 0.91751 0.85494 0.81516 0.82231 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 10.70 127.77 1.37 2.85 16 2 N -0.72 -15.20 5.70 -488.01 -2.78 -17.99 16 3 C 0.59 18.30 7.68 86.63 0.66 18.96 16 4 O -0.57 -20.19 12.45 -4.07 -0.05 -20.24 16 5 C -0.32 -11.09 6.27 -18.78 -0.12 -11.21 16 6 C 0.11 3.71 10.89 84.27 0.92 4.63 16 7 N -0.33 -14.03 3.62 -350.18 -1.27 -15.30 16 8 C 0.26 12.46 6.21 85.63 0.53 12.99 16 9 C -0.55 -29.32 9.21 25.60 0.24 -29.09 16 10 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 11 C 0.03 1.36 5.46 84.66 0.46 1.82 16 12 N -0.92 -49.20 13.29 21.45 0.28 -48.92 16 13 Si 0.96 42.26 29.54 68.60 2.03 44.29 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 N -0.30 -13.66 12.28 -44.53 -0.55 -14.20 16 18 C 0.13 5.16 6.94 44.07 0.31 5.47 16 19 C -0.03 -1.18 5.73 -20.05 -0.11 -1.29 16 20 C -0.09 -2.72 9.76 22.49 0.22 -2.50 16 21 C -0.12 -2.77 10.03 22.23 0.22 -2.55 16 22 C -0.08 -1.89 9.78 22.33 0.22 -1.67 16 23 C -0.11 -3.17 6.22 22.28 0.14 -3.03 16 24 Br -0.05 -1.18 33.69 -20.37 -0.69 -1.87 16 25 C -0.04 -1.32 7.51 22.51 0.17 -1.15 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.41 6.21 7.78 -92.71 -0.72 5.49 16 30 H 0.22 4.70 7.48 -2.91 -0.02 4.68 16 31 H 0.07 3.12 8.05 -2.39 -0.02 3.10 16 32 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 34 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 35 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.14 5.06 5.67 -2.91 -0.02 5.04 16 Total: -1.00 -68.12 346.10 2.60 -65.53 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.40 Total: 14.47 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 5.22 Total: -5.77 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -4.31 Total: -96.41 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 35 Polarization: -1.18 SS G_CDS: -0.69 Total: -1.87 kcal Total: -68.12 2.60 -65.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065492165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.213 kcal (2) G-P(sol) polarization free energy of solvation -68.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds