Wall clock time and date at job start Tue Mar 31 2020 06:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86802 * 119.99696 * 2 1 4 4 H 1.48501 * 109.47257 * 265.73850 * 3 2 1 5 5 H 1.48502 * 109.47110 * 25.74040 * 3 2 1 6 6 H 1.48503 * 109.46863 * 145.73751 * 3 2 1 7 7 C 1.38884 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00079 * 337.86211 * 7 2 1 9 9 N 1.37141 * 119.99989 * 157.86659 * 7 2 1 10 10 C 1.34777 * 120.00047 * 152.86857 * 9 7 2 11 11 O 1.21279 * 119.99988 * 174.95654 * 10 9 7 12 12 C 1.50707 * 120.00083 * 354.94947 * 10 9 7 13 13 S 1.80993 * 109.47113 * 180.02562 * 12 10 9 14 14 C 1.76203 * 100.00043 * 180.02562 * 13 12 10 15 15 C 1.38739 * 121.05799 * 0.02562 * 14 13 12 16 16 C 1.38730 * 119.67534 * 179.97438 * 15 14 13 17 17 N 1.31325 * 121.87776 * 359.97438 * 16 15 14 18 18 C 1.33794 * 121.69152 * 0.02562 * 17 16 15 19 19 C 1.40556 * 120.99027 * 180.02562 * 18 17 16 20 20 C 1.36137 * 119.75534 * 179.97438 * 19 18 17 21 21 C 1.39270 * 121.03073 * 359.97438 * 20 19 18 22 22 C 1.36262 * 120.81137 * 359.97438 * 21 20 19 23 23 C 1.40134 * 119.63519 * 0.02562 * 22 21 20 24 24 C 1.39786 * 120.00186 * 332.86897 * 9 7 2 25 25 C 1.38956 * 120.07916 * 117.86462 * 24 9 7 26 26 C 1.38089 * 119.91958 * 179.79421 * 25 24 9 27 27 C 1.38298 * 120.07902 * 0.46328 * 26 25 24 28 28 C 1.38316 * 120.15608 * 359.79269 * 27 26 25 29 29 C 1.38078 * 120.07648 * 359.97128 * 28 27 26 30 30 H 0.97001 * 120.00288 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46503 * 60.00387 * 12 10 9 32 32 H 1.08998 * 109.47040 * 300.00449 * 12 10 9 33 33 H 1.07994 * 120.16140 * 359.95862 * 15 14 13 34 34 H 1.08002 * 119.05728 * 179.97438 * 16 15 14 35 35 H 1.07999 * 120.12444 * 0.24925 * 19 18 17 36 36 H 1.08001 * 119.48545 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.58979 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.18870 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.03954 * 0.02562 * 25 24 9 40 40 H 1.07999 * 119.95879 * 180.25641 * 26 25 24 41 41 H 1.08002 * 119.92501 * 179.77015 * 27 26 25 42 42 H 1.08005 * 119.95883 * 180.02562 * 28 27 26 43 43 H 1.08002 * 120.03801 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.5858 1.9945 -1.3962 5 1 1.4034 2.6770 0.6081 6 1 3.4978 1.4679 0.7882 7 6 2.0087 -1.2027 0.0005 8 1 1.5285 -2.1034 0.3534 9 7 3.3043 -1.2467 -0.4469 10 6 4.1478 -2.1873 0.0224 11 8 5.2652 -2.2845 -0.4392 12 6 3.7027 -3.1183 1.1207 13 16 5.0489 -4.2570 1.5290 14 6 4.2762 -5.2010 2.8004 15 6 2.9726 -4.9377 3.1956 16 6 2.3921 -5.6993 4.1994 17 7 3.0419 -6.6727 4.7952 18 6 4.3011 -6.9822 4.4655 19 6 4.9826 -8.0275 5.1125 20 6 6.2633 -8.3213 4.7566 21 6 6.9140 -7.6015 3.7575 22 6 6.2839 -6.5826 3.1084 23 6 4.9652 -6.2537 3.4500 24 6 3.7501 -0.3159 -1.3897 25 6 4.7750 0.5654 -1.0676 26 6 5.2158 1.4807 -2.0029 27 6 4.6319 1.5274 -3.2557 28 6 3.6079 0.6552 -3.5780 29 6 3.1655 -0.2659 -2.6493 30 1 -0.4850 0.8400 -0.0004 31 1 2.8347 -3.6863 0.7858 32 1 3.4380 -2.5374 2.0043 33 1 2.4126 -4.1437 2.7242 34 1 1.3769 -5.4855 4.4995 35 1 4.4905 -8.5984 5.8860 36 1 6.7830 -9.1251 5.2569 37 1 7.9301 -7.8547 3.4935 38 1 6.7979 -6.0313 2.3348 39 1 5.2289 0.5320 -0.0881 40 1 6.0151 2.1632 -1.7546 41 1 4.9760 2.2468 -3.9841 42 1 3.1545 0.6942 -4.5575 43 1 2.3656 -0.9463 -2.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065515167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:27 Heat of formation + Delta-G solvation = 71.847686 kcal Electronic energy + Delta-G solvation = -28611.557249 eV Core-core repulsion = 24713.653860 eV Total energy + Delta-G solvation = -3897.903388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.66977 -40.01982 -37.84827 -37.08295 -35.15116 -33.51619 -32.31592 -31.07741 -30.46305 -30.38800 -29.87141 -28.26974 -25.22488 -24.49173 -23.57444 -22.48310 -22.17059 -22.02139 -19.47709 -18.52302 -18.23938 -17.47123 -17.14694 -16.41515 -16.06116 -15.71638 -15.40821 -15.12451 -14.77913 -14.52303 -14.31956 -14.22206 -14.06857 -13.81741 -13.79731 -13.26985 -13.04017 -12.92568 -12.77825 -12.53454 -12.41897 -12.10863 -11.83903 -11.72485 -11.47188 -11.19479 -11.06981 -10.98342 -10.80994 -10.71684 -10.36428 -10.10619 -9.54524 -9.40904 -9.17896 -8.86214 -8.70301 -8.61705 -8.38062 -7.84414 -7.36239 -6.75005 -4.34632 0.26025 0.79077 1.46278 1.77838 1.86101 1.89671 2.36635 2.86844 3.01103 3.17726 3.21040 3.31999 3.96465 4.01697 4.05600 4.27459 4.27714 4.62108 4.66086 4.76212 4.76954 5.06076 5.11901 5.24490 5.30190 5.36679 5.37507 5.42448 5.45810 5.54999 5.58521 5.72983 5.78173 5.90804 5.90859 5.99888 6.05998 6.20151 6.22403 6.34197 6.44306 6.49369 6.77726 6.78700 6.95304 6.98639 7.09744 7.45256 7.67246 7.92620 7.96207 8.55150 8.96502 9.23713 10.31987 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002650 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.078566 B =10565.109370 C =11772.941441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.082 3.918 3 Si 0.860 3.140 4 H -0.251 1.251 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.365 4.365 8 H 0.114 0.886 9 N -0.410 5.410 10 C 0.492 3.508 11 O -0.565 6.565 12 C -0.130 4.130 13 S -0.001 6.001 14 C -0.043 4.043 15 C -0.200 4.200 16 C 0.155 3.845 17 N -0.493 5.493 18 C 0.142 3.858 19 C -0.099 4.099 20 C -0.099 4.099 21 C -0.124 4.124 22 C -0.086 4.086 23 C -0.088 4.088 24 C 0.156 3.844 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.137 4.137 28 C -0.114 4.114 29 C -0.109 4.109 30 H 0.280 0.720 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.146 0.854 34 H 0.162 0.838 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.421 -7.503 4.156 11.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.129 4.129 3 Si 0.686 3.314 4 H -0.175 1.175 5 H -0.218 1.218 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.132 0.868 9 N -0.125 5.125 10 C 0.281 3.719 11 O -0.448 6.448 12 C -0.280 4.280 13 S 0.246 5.754 14 C -0.166 4.166 15 C -0.229 4.229 16 C -0.017 4.017 17 N -0.203 5.203 18 C 0.019 3.981 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.105 4.105 23 C -0.095 4.095 24 C 0.064 3.936 25 C -0.145 4.145 26 C -0.135 4.135 27 C -0.156 4.156 28 C -0.133 4.133 29 C -0.128 4.128 30 H 0.091 0.909 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.164 0.836 34 H 0.179 0.821 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.576 -7.997 4.021 12.396 hybrid contribution -1.033 1.613 0.030 1.916 sum 7.543 -6.384 4.051 10.680 Atomic orbital electron populations 1.69754 1.06332 1.28944 1.42572 1.25179 0.95069 0.98726 0.93935 0.87166 0.80143 0.82932 0.81188 1.17524 1.21787 1.18398 1.19165 0.85442 0.97637 1.46699 0.86820 1.41357 1.11039 1.26396 1.33726 1.19378 0.84476 0.84151 0.83944 1.90647 1.20121 1.73355 1.60700 1.23824 1.00781 0.99957 1.03447 1.86100 1.18725 1.33620 1.36991 1.22989 0.97109 0.97520 0.98947 1.22265 0.94974 1.03955 1.01744 1.22770 0.99367 0.89167 0.90444 1.68090 1.07577 1.16986 1.27686 1.18829 0.90554 0.95257 0.93465 1.20760 0.94473 0.96484 1.00118 1.20894 0.94605 0.99386 0.97012 1.20877 1.00386 0.96166 0.96787 1.20989 0.93064 0.97188 0.99264 1.18369 0.95610 0.96936 0.98560 1.17633 0.94937 0.91656 0.89373 1.21182 0.98153 0.95298 0.99865 1.20856 1.00053 0.98915 0.93721 1.20977 0.97794 1.00059 0.96725 1.20928 0.97340 0.95974 0.99020 1.21179 1.00616 0.99377 0.91660 0.90948 0.86564 0.86151 0.83648 0.82131 0.84805 0.85400 0.85472 0.84967 0.86260 0.86375 0.86597 0.86249 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.67 13.96 55.49 0.77 -20.90 16 2 C 0.08 2.01 5.20 -17.49 -0.09 1.92 16 3 Si 0.86 19.54 23.47 -169.99 -3.99 15.55 16 4 H -0.25 -5.60 5.27 56.52 0.30 -5.30 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -5.89 6.12 56.52 0.35 -5.55 16 7 C -0.36 -8.66 9.12 -14.94 -0.14 -8.79 16 8 H 0.11 2.70 6.90 -52.49 -0.36 2.34 16 9 N -0.41 -9.28 2.49 -58.98 -0.15 -9.42 16 10 C 0.49 10.59 7.47 -10.98 -0.08 10.50 16 11 O -0.57 -13.26 15.43 5.56 0.09 -13.18 16 12 C -0.13 -2.28 3.36 36.01 0.12 -2.15 16 13 S 0.00 -0.02 19.76 -107.50 -2.12 -2.14 16 14 C -0.04 -0.66 6.20 -38.12 -0.24 -0.89 16 15 C -0.20 -2.80 9.25 -39.21 -0.36 -3.16 16 16 C 0.15 2.04 11.13 -17.59 -0.20 1.85 16 17 N -0.49 -7.19 10.33 -11.10 -0.11 -7.31 16 18 C 0.14 2.04 6.60 -84.89 -0.56 1.48 16 19 C -0.10 -1.15 9.98 -39.46 -0.39 -1.55 16 20 C -0.10 -0.96 9.94 -39.95 -0.40 -1.36 16 21 C -0.12 -1.27 9.96 -39.91 -0.40 -1.67 16 22 C -0.09 -1.09 9.42 -39.58 -0.37 -1.47 16 23 C -0.09 -1.29 5.75 -106.65 -0.61 -1.91 16 24 C 0.16 3.44 2.29 -83.70 -0.19 3.25 16 25 C -0.12 -2.59 5.86 -39.37 -0.23 -2.82 16 26 C -0.12 -2.07 9.55 -39.61 -0.38 -2.45 16 27 C -0.14 -2.26 9.74 -39.53 -0.38 -2.64 16 28 C -0.11 -1.99 9.63 -39.61 -0.38 -2.37 16 29 C -0.11 -2.22 8.48 -39.37 -0.33 -2.56 16 30 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.12 1.92 6.93 -51.92 -0.36 1.56 16 32 H 0.12 2.01 7.59 -51.92 -0.39 1.61 16 33 H 0.15 1.90 5.65 -52.49 -0.30 1.61 16 34 H 0.16 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.13 1.64 6.95 -52.49 -0.36 1.27 16 39 H 0.12 2.50 7.72 -52.48 -0.40 2.10 16 40 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 42 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.13 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -29.45 367.35 -10.46 -39.90 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.86 Total: 8.75 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -5.62 Total: -16.79 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.51 Total: -37.63 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -3.99 Total: 15.55 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.12 Total: -2.14 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.45 -10.46 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065515167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.751 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds