Wall clock time and date at job start Tue Mar 31 2020 06:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86802 * 119.99696 * 2 1 4 4 H 1.48501 * 109.47257 * 265.73850 * 3 2 1 5 5 H 1.48502 * 109.47110 * 25.74040 * 3 2 1 6 6 H 1.48503 * 109.46863 * 145.73751 * 3 2 1 7 7 C 1.38884 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00079 * 337.86211 * 7 2 1 9 9 N 1.37141 * 119.99989 * 157.86659 * 7 2 1 10 10 C 1.34777 * 120.00047 * 152.86857 * 9 7 2 11 11 O 1.21279 * 119.99988 * 174.95654 * 10 9 7 12 12 C 1.50707 * 120.00083 * 354.94947 * 10 9 7 13 13 S 1.80993 * 109.47113 * 180.02562 * 12 10 9 14 14 C 1.76203 * 100.00043 * 180.02562 * 13 12 10 15 15 C 1.38739 * 121.05799 * 0.02562 * 14 13 12 16 16 C 1.38730 * 119.67534 * 179.97438 * 15 14 13 17 17 N 1.31325 * 121.87776 * 359.97438 * 16 15 14 18 18 C 1.33794 * 121.69152 * 0.02562 * 17 16 15 19 19 C 1.40556 * 120.99027 * 180.02562 * 18 17 16 20 20 C 1.36137 * 119.75534 * 179.97438 * 19 18 17 21 21 C 1.39270 * 121.03073 * 359.97438 * 20 19 18 22 22 C 1.36262 * 120.81137 * 359.97438 * 21 20 19 23 23 C 1.40134 * 119.63519 * 0.02562 * 22 21 20 24 24 C 1.39786 * 120.00186 * 332.86897 * 9 7 2 25 25 C 1.38956 * 120.07916 * 117.86462 * 24 9 7 26 26 C 1.38089 * 119.91958 * 179.79421 * 25 24 9 27 27 C 1.38298 * 120.07902 * 0.46328 * 26 25 24 28 28 C 1.38316 * 120.15608 * 359.79269 * 27 26 25 29 29 C 1.38078 * 120.07648 * 359.97128 * 28 27 26 30 30 H 0.97001 * 120.00288 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.46503 * 60.00387 * 12 10 9 32 32 H 1.08998 * 109.47040 * 300.00449 * 12 10 9 33 33 H 1.07994 * 120.16140 * 359.95862 * 15 14 13 34 34 H 1.08002 * 119.05728 * 179.97438 * 16 15 14 35 35 H 1.07999 * 120.12444 * 0.24925 * 19 18 17 36 36 H 1.08001 * 119.48545 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.58979 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.18870 * 180.02562 * 22 21 20 39 39 H 1.08004 * 120.03954 * 0.02562 * 25 24 9 40 40 H 1.07999 * 119.95879 * 180.25641 * 26 25 24 41 41 H 1.08002 * 119.92501 * 179.77015 * 27 26 25 42 42 H 1.08005 * 119.95883 * 180.02562 * 28 27 26 43 43 H 1.08002 * 120.03801 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.5858 1.9945 -1.3962 5 1 1.4034 2.6770 0.6081 6 1 3.4978 1.4679 0.7882 7 6 2.0087 -1.2027 0.0005 8 1 1.5285 -2.1034 0.3534 9 7 3.3043 -1.2467 -0.4469 10 6 4.1478 -2.1873 0.0224 11 8 5.2652 -2.2845 -0.4392 12 6 3.7027 -3.1183 1.1207 13 16 5.0489 -4.2570 1.5290 14 6 4.2762 -5.2010 2.8004 15 6 2.9726 -4.9377 3.1956 16 6 2.3921 -5.6993 4.1994 17 7 3.0419 -6.6727 4.7952 18 6 4.3011 -6.9822 4.4655 19 6 4.9826 -8.0275 5.1125 20 6 6.2633 -8.3213 4.7566 21 6 6.9140 -7.6015 3.7575 22 6 6.2839 -6.5826 3.1084 23 6 4.9652 -6.2537 3.4500 24 6 3.7501 -0.3159 -1.3897 25 6 4.7750 0.5654 -1.0676 26 6 5.2158 1.4807 -2.0029 27 6 4.6319 1.5274 -3.2557 28 6 3.6079 0.6552 -3.5780 29 6 3.1655 -0.2659 -2.6493 30 1 -0.4850 0.8400 -0.0004 31 1 2.8347 -3.6863 0.7858 32 1 3.4380 -2.5374 2.0043 33 1 2.4126 -4.1437 2.7242 34 1 1.3769 -5.4855 4.4995 35 1 4.4905 -8.5984 5.8860 36 1 6.7830 -9.1251 5.2569 37 1 7.9301 -7.8547 3.4935 38 1 6.7979 -6.0313 2.3348 39 1 5.2289 0.5320 -0.0881 40 1 6.0151 2.1632 -1.7546 41 1 4.9760 2.2468 -3.9841 42 1 3.1545 0.6942 -4.5575 43 1 2.3656 -0.9463 -2.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065515167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:26 Heat of formation + Delta-G solvation = 57.114906 kcal Electronic energy + Delta-G solvation = -28612.196110 eV Core-core repulsion = 24713.653860 eV Total energy + Delta-G solvation = -3898.542250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 364.099 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.67132 -41.63935 -39.39978 -38.02658 -36.86892 -34.55788 -34.16006 -32.36154 -31.90519 -31.47389 -30.97325 -29.71724 -27.04830 -25.50734 -24.59576 -23.81562 -23.54229 -23.23553 -21.14687 -19.97934 -19.38533 -18.74812 -18.16619 -17.86971 -17.67356 -17.19889 -16.76270 -16.59016 -16.00593 -15.78708 -15.54530 -15.39822 -15.38786 -15.11518 -14.87780 -14.77893 -14.41770 -14.36445 -14.18617 -14.07420 -13.77344 -13.74247 -12.91355 -12.77904 -12.64423 -12.59246 -12.48758 -12.37116 -12.21767 -12.10035 -11.86818 -11.63040 -11.27759 -10.91486 -10.48225 -10.37732 -9.85553 -9.82988 -9.71051 -9.43532 -8.64228 -8.57178 -6.23293 -0.74964 -0.19588 0.14986 0.32440 0.43062 0.85488 1.08246 1.21890 1.34216 1.38624 1.60522 1.93688 2.17309 2.37922 2.73912 2.97978 3.05654 3.34207 3.61843 3.67659 3.73008 3.86903 3.93734 4.00838 4.05900 4.16400 4.19928 4.23455 4.29450 4.41380 4.48469 4.51249 4.56647 4.62703 4.66945 4.75802 5.00218 5.06900 5.08947 5.25943 5.35652 5.45109 5.45851 5.48886 5.53261 5.54909 5.84634 5.88560 5.94386 6.22436 6.73293 6.87444 7.16347 7.49435 8.45690 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.016418 B = 0.002650 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.078566 B =10565.109370 C =11772.941441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.052 3.948 3 Si 0.903 3.097 4 H -0.242 1.242 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.358 4.358 8 H 0.105 0.895 9 N -0.420 5.420 10 C 0.487 3.513 11 O -0.588 6.588 12 C -0.122 4.122 13 S -0.013 6.013 14 C -0.057 4.057 15 C -0.203 4.203 16 C 0.147 3.853 17 N -0.503 5.503 18 C 0.117 3.883 19 C -0.109 4.109 20 C -0.086 4.086 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.105 4.105 24 C 0.122 3.878 25 C -0.147 4.147 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.111 4.111 29 C -0.132 4.132 30 H 0.282 0.718 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.149 0.851 34 H 0.189 0.811 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.155 0.845 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.203 -7.685 3.909 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.155 4.155 3 Si 0.729 3.271 4 H -0.166 1.166 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.484 4.484 8 H 0.123 0.877 9 N -0.135 5.135 10 C 0.277 3.723 11 O -0.472 6.472 12 C -0.272 4.272 13 S 0.232 5.768 14 C -0.179 4.179 15 C -0.232 4.232 16 C -0.025 4.025 17 N -0.213 5.213 18 C -0.005 4.005 19 C -0.128 4.128 20 C -0.106 4.106 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.111 4.111 24 C 0.031 3.969 25 C -0.167 4.167 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.129 4.129 29 C -0.151 4.151 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.166 0.834 34 H 0.206 0.794 35 H 0.168 0.832 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.146 0.854 39 H 0.123 0.877 40 H 0.170 0.830 41 H 0.180 0.820 42 H 0.172 0.828 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.363 -8.182 3.772 13.732 hybrid contribution -1.433 1.534 0.105 2.101 sum 8.930 -6.649 3.877 11.789 Atomic orbital electron populations 1.69801 1.07191 1.29453 1.44806 1.25559 0.95349 1.00545 0.94042 0.86492 0.78792 0.80566 0.81301 1.16595 1.22473 1.19119 1.19135 0.85873 0.97293 1.46071 0.87731 1.41440 1.10705 1.26971 1.34424 1.19896 0.84159 0.84009 0.84218 1.90610 1.21031 1.73938 1.61656 1.23678 1.01523 0.99754 1.02237 1.86026 1.18487 1.33893 1.38384 1.22981 0.97695 0.98130 0.99065 1.22403 0.94742 1.04114 1.01957 1.23186 1.00466 0.88770 0.90094 1.68128 1.07993 1.17290 1.27932 1.19265 0.90812 0.96369 0.94083 1.21076 0.95352 0.95948 1.00428 1.21357 0.93786 0.99435 0.95978 1.21325 1.01547 0.94335 0.95454 1.21101 0.92768 0.98799 1.00415 1.18599 0.96580 0.97010 0.98940 1.17962 0.96454 0.92425 0.90066 1.21274 0.98490 0.96616 1.00350 1.21332 1.00437 0.98196 0.93565 1.21533 0.96253 0.99725 0.96885 1.21395 0.97155 0.94656 0.99719 1.21307 1.00980 1.00714 0.92136 0.90804 0.85965 0.85676 0.83385 0.79424 0.83202 0.81341 0.82234 0.85394 0.87687 0.83002 0.81960 0.82774 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.22 13.96 21.65 0.30 -45.92 16 2 C 0.05 2.64 5.20 84.91 0.44 3.08 16 3 Si 0.90 40.81 23.47 68.60 1.61 42.42 16 4 H -0.24 -10.43 5.27 99.48 0.52 -9.90 16 5 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.16 6.12 99.48 0.61 -11.55 16 7 C -0.36 -17.62 9.12 84.02 0.77 -16.86 16 8 H 0.11 5.20 6.90 -2.91 -0.02 5.18 16 9 N -0.42 -19.62 2.49 -458.90 -1.14 -20.76 16 10 C 0.49 21.82 7.47 87.66 0.65 22.48 16 11 O -0.59 -28.54 15.43 -3.03 -0.05 -28.58 16 12 C -0.12 -4.48 3.36 71.24 0.24 -4.24 16 13 S -0.01 -0.46 19.76 -56.49 -1.12 -1.57 16 14 C -0.06 -1.77 6.20 23.22 0.14 -1.63 16 15 C -0.20 -5.86 9.25 22.51 0.21 -5.65 16 16 C 0.15 3.90 11.13 84.89 0.94 4.84 16 17 N -0.50 -14.56 10.33 -189.04 -1.95 -16.51 16 18 C 0.12 3.31 6.60 40.22 0.27 3.58 16 19 C -0.11 -2.32 9.98 22.35 0.22 -2.10 16 20 C -0.09 -1.38 9.94 22.03 0.22 -1.16 16 21 C -0.11 -1.95 9.96 22.06 0.22 -1.73 16 22 C -0.11 -2.79 9.42 22.27 0.21 -2.58 16 23 C -0.11 -3.09 5.75 -21.18 -0.12 -3.22 16 24 C 0.12 5.44 2.29 38.22 0.09 5.53 16 25 C -0.15 -6.06 5.86 22.41 0.13 -5.93 16 26 C -0.12 -3.82 9.55 22.25 0.21 -3.61 16 27 C -0.13 -3.64 9.74 22.30 0.22 -3.42 16 28 C -0.11 -3.57 9.63 22.25 0.21 -3.35 16 29 C -0.13 -5.35 8.48 22.41 0.19 -5.16 16 30 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 31 H 0.12 4.27 6.93 -2.39 -0.02 4.26 16 32 H 0.13 4.40 7.59 -2.40 -0.02 4.38 16 33 H 0.15 4.06 5.65 -2.91 -0.02 4.05 16 34 H 0.19 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 37 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.13 3.22 6.95 -2.91 -0.02 3.20 16 39 H 0.10 4.50 7.72 -2.91 -0.02 4.48 16 40 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 41 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 42 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 43 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -66.35 367.35 3.89 -62.47 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.77 Total: 29.59 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 5.47 Total: -21.14 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.79 Total: -83.19 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.61 Total: 42.42 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -1.12 Total: -1.57 kcal Total: -66.35 3.89 -62.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065515167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.583 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds