Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99821 * 2 1 4 4 C 1.38218 * 119.99440 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00315 * 359.95122 * 4 3 2 6 6 C 1.38210 * 120.00185 * 359.79506 * 5 4 3 7 7 C 1.38207 * 119.99938 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.00229 * 359.97438 * 7 2 1 9 9 H 1.09006 * 110.41551 * 327.31590 * 8 7 2 10 10 C 1.54911 * 110.37239 * 89.62278 * 8 7 2 11 11 C 1.55146 * 101.64801 * 155.90028 * 10 8 7 12 12 C 1.54311 * 103.01904 * 324.34841 * 11 10 8 13 13 N 1.47443 * 107.23703 * 22.28764 * 12 11 10 14 14 C 1.38108 * 111.00265 * 123.25525 * 13 12 11 15 15 N 1.32861 * 120.81094 * 239.89423 * 14 13 12 16 16 C 1.32124 * 121.18948 * 179.97438 * 15 14 13 17 17 N 1.31505 * 122.65085 * 359.97438 * 16 15 14 18 18 C 1.33199 * 120.67828 * 359.70808 * 17 16 15 19 19 C 1.40812 * 120.81318 * 59.87388 * 14 13 12 20 20 C 1.41172 * 134.70177 * 0.02562 * 19 14 13 21 21 N 1.30245 * 108.47356 * 180.02562 * 20 19 14 22 22 N 1.36319 * 134.60877 * 179.54728 * 18 17 16 23 23 C 1.46497 * 125.87580 * 0.77780 * 22 18 17 24 24 C 1.50694 * 109.47115 * 269.71961 * 23 22 18 25 25 H 1.08000 * 120.00563 * 359.97438 * 24 23 22 26 26 C 1.37885 * 119.99902 * 180.02562 * 24 23 22 27 27 N 1.31516 * 119.99913 * 359.97438 * 26 24 23 28 28 Si 1.86798 * 119.99766 * 179.97438 * 26 24 23 29 29 H 1.48506 * 109.46985 * 179.97438 * 28 26 24 30 30 H 1.48494 * 109.47276 * 299.99832 * 28 26 24 31 31 H 1.48498 * 109.47150 * 60.00043 * 28 26 24 32 32 H 1.09002 * 109.47024 * 270.02363 * 1 2 3 33 33 H 1.09002 * 109.46927 * 30.01797 * 1 2 3 34 34 H 1.08992 * 109.47363 * 150.02023 * 1 2 3 35 35 H 1.07997 * 120.00283 * 359.97438 * 3 2 1 36 36 H 1.08006 * 119.99681 * 179.97438 * 4 3 2 37 37 H 1.08003 * 119.99809 * 180.02562 * 5 4 3 38 38 H 1.07999 * 120.00647 * 180.24991 * 6 5 4 39 39 H 1.09000 * 110.98520 * 37.81259 * 10 8 7 40 40 H 1.08996 * 111.02520 * 274.01243 * 10 8 7 41 41 H 1.09003 * 110.70261 * 205.96529 * 11 10 8 42 42 H 1.09004 * 110.69997 * 82.73697 * 11 10 8 43 43 H 1.08996 * 109.88907 * 262.87357 * 12 11 10 44 44 H 1.09006 * 109.88260 * 141.69110 * 12 11 10 45 45 H 1.08000 * 118.67248 * 179.97438 * 16 15 14 46 46 H 1.08003 * 125.76262 * 359.97438 * 20 19 14 47 47 H 1.09007 * 109.47078 * 149.71600 * 23 22 18 48 48 H 1.09003 * 109.46733 * 29.72323 * 23 22 18 49 49 H 0.97001 * 119.99646 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5807 -1.1970 0.0052 7 6 2.1980 -1.1969 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.5100 -2.4011 0.5537 10 6 1.1661 -2.9653 -1.4501 11 6 0.9999 -4.4966 -1.2638 12 6 2.0196 -4.8243 -0.1530 13 7 2.2752 -3.5754 0.5879 14 6 2.0033 -3.7332 1.9327 15 7 1.0860 -2.9834 2.5341 16 6 0.8196 -3.1284 3.8200 17 7 1.4346 -4.0104 4.5770 18 6 2.3660 -4.8134 4.0652 19 6 2.6912 -4.6928 2.6999 20 6 3.6990 -5.6437 2.4295 21 7 3.9695 -6.2831 3.5315 22 7 3.1660 -5.7951 4.5698 23 6 3.1797 -6.2625 5.9581 24 6 4.1790 -5.4582 6.7490 25 1 4.7474 -4.6773 6.2658 26 6 4.3685 -5.7201 8.0895 27 7 3.6767 -6.6713 8.6778 28 14 5.6077 -4.7236 9.0696 29 1 5.6215 -5.1973 10.4771 30 1 6.9586 -4.8925 8.4767 31 1 5.2276 -3.2885 9.0346 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3634 -0.8901 -0.5135 35 1 1.6583 2.1327 -0.0004 36 1 4.1205 2.1326 -0.0010 37 1 5.3517 0.0000 -0.0001 38 1 4.1206 -2.1323 0.0097 39 1 2.0114 -2.7405 -2.1005 40 1 0.2501 -2.5170 -1.8347 41 1 1.2486 -5.0258 -2.1837 42 1 -0.0129 -4.7378 -0.9409 43 1 2.9463 -5.1889 -0.5961 44 1 1.6065 -5.5764 0.5193 45 1 0.0663 -2.4969 4.2675 46 1 4.1661 -5.8130 1.4705 47 1 3.4589 -7.3159 5.9841 48 1 2.1879 -6.1386 6.3929 49 1 3.8102 -6.8557 9.6207 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = 153.672213 kcal Electronic energy + Delta-G solvation = -32653.539540 eV Core-core repulsion = 28582.275966 eV Total energy + Delta-G solvation = -4071.263574 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73418 -40.30084 -38.77290 -37.89998 -34.18490 -33.42580 -33.01913 -31.84158 -31.50238 -31.22104 -29.13467 -28.27901 -27.19530 -26.78982 -24.21519 -23.79609 -23.07897 -22.46957 -21.50179 -21.39523 -20.37279 -19.75712 -17.60769 -17.48575 -16.94494 -16.69302 -16.39806 -15.75247 -15.23185 -14.94356 -14.81948 -14.75264 -14.43207 -14.08041 -13.89525 -13.76019 -13.47851 -13.36374 -13.24427 -13.06838 -12.77081 -12.42331 -12.41810 -12.21428 -12.17396 -11.78931 -11.66914 -11.50539 -11.30614 -11.11588 -11.05099 -10.92532 -10.81294 -10.77804 -10.63254 -10.29145 -10.20094 -9.82226 -9.26339 -8.79844 -8.74963 -8.61343 -8.55160 -8.37479 -7.87975 -6.23926 -4.30639 1.02424 1.34735 1.43528 1.75153 2.89293 2.98780 3.25842 3.28667 3.33525 3.36280 3.75089 4.15554 4.22345 4.31405 4.42314 4.51679 4.65850 4.67096 4.79252 4.83659 4.91818 5.04516 5.10061 5.11083 5.12796 5.18725 5.22233 5.24643 5.41778 5.49065 5.52739 5.56361 5.57383 5.63821 5.64141 5.68305 5.75726 5.81981 5.95142 6.06572 6.11513 6.25671 6.34970 6.50445 6.57526 6.58677 6.75125 6.98488 7.03816 7.04912 7.09938 7.28600 7.62857 7.78872 7.88226 8.13584 8.62021 8.73350 9.34594 10.84290 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.011894 B = 0.002867 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.546046 B = 9763.351279 C =10763.170219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.126 4.126 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.091 4.091 7 C -0.063 4.063 8 C 0.111 3.889 9 H 0.108 0.892 10 C -0.121 4.121 11 C -0.140 4.140 12 C 0.050 3.950 13 N -0.461 5.461 14 C 0.430 3.570 15 N -0.593 5.593 16 C 0.348 3.652 17 N -0.532 5.532 18 C 0.350 3.650 19 C -0.294 4.294 20 C 0.073 3.927 21 N -0.236 5.236 22 N -0.332 5.332 23 C 0.264 3.736 24 C -0.535 4.535 25 H 0.061 0.939 26 C 0.068 3.932 27 N -0.891 5.891 28 Si 0.907 3.093 29 H -0.283 1.283 30 H -0.274 1.274 31 H -0.274 1.274 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.195 0.805 46 H 0.187 0.813 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.008 10.210 -23.338 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.110 4.110 7 C -0.064 4.064 8 C 0.005 3.995 9 H 0.126 0.874 10 C -0.160 4.160 11 C -0.178 4.178 12 C -0.075 4.075 13 N -0.179 5.179 14 C 0.180 3.820 15 N -0.318 5.318 16 C 0.054 3.946 17 N -0.254 5.254 18 C 0.102 3.898 19 C -0.310 4.310 20 C -0.123 4.123 21 N -0.052 5.052 22 N -0.118 5.118 23 C 0.147 3.853 24 C -0.574 4.574 25 H 0.079 0.921 26 C -0.136 4.136 27 N -0.529 5.529 28 Si 0.734 3.266 29 H -0.208 1.208 30 H -0.200 1.200 31 H -0.200 1.200 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.211 0.789 46 H 0.203 0.797 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.396 9.677 -21.964 24.839 hybrid contribution 0.370 0.598 0.284 0.759 sum -6.026 10.276 -21.680 24.737 Atomic orbital electron populations 1.20818 0.91408 1.02208 1.02714 1.19660 0.95904 0.92422 0.99628 1.20919 0.94208 0.97184 1.02097 1.21084 0.94347 0.97903 1.00659 1.21140 0.99755 0.92663 1.01372 1.21076 0.93778 0.98267 0.97840 1.19384 0.93607 0.92944 1.00422 1.21570 0.95850 0.87681 0.94430 0.87444 1.22794 1.02638 0.94855 0.95671 1.22810 0.99499 0.96443 0.99062 1.22933 1.00106 0.89379 0.95126 1.60100 1.51276 1.07023 0.99455 1.19464 0.85916 0.86442 0.90175 1.68207 1.19218 1.30728 1.13648 1.24489 0.94226 0.91155 0.84690 1.67522 1.10588 1.07809 1.39490 1.19045 0.91432 0.90630 0.88739 1.19675 1.07931 1.07024 0.96395 1.23516 0.96439 0.94368 0.97944 1.76977 1.12904 1.20314 0.94969 1.49516 1.25875 1.26187 1.10268 1.19806 0.99640 0.96705 0.69105 1.21205 1.22642 1.19148 0.94402 0.92084 1.24893 0.96279 0.95271 0.97153 1.69908 1.40456 1.30378 1.12149 0.86399 0.81248 0.80305 0.78647 1.20838 1.19952 1.19952 0.90722 0.91939 0.91606 0.86436 0.86573 0.86477 0.85285 0.90219 0.90134 0.89835 0.90910 0.88967 0.91153 0.78851 0.79658 0.92731 0.92297 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.23 36.01 0.33 -0.64 16 2 C -0.08 -0.82 5.88 -104.63 -0.62 -1.43 16 3 C -0.13 -1.31 9.70 -39.58 -0.38 -1.70 16 4 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 5 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 6 C -0.09 -1.12 9.35 -39.58 -0.37 -1.49 16 7 C -0.06 -0.74 5.08 -104.62 -0.53 -1.27 16 8 C 0.11 1.19 1.50 -67.34 -0.10 1.09 16 9 H 0.11 1.27 5.38 -51.93 -0.28 0.99 16 10 C -0.12 -0.95 6.33 -24.59 -0.16 -1.11 16 11 C -0.14 -1.01 6.94 -24.91 -0.17 -1.18 16 12 C 0.05 0.48 5.96 -2.84 -0.02 0.46 16 13 N -0.46 -5.59 3.64 -163.45 -0.59 -6.18 16 14 C 0.43 6.73 6.17 -154.85 -0.96 5.77 16 15 N -0.59 -9.36 8.32 -13.62 -0.11 -9.47 16 16 C 0.35 5.83 12.24 -92.12 -1.13 4.71 16 17 N -0.53 -11.17 10.47 -13.97 -0.15 -11.31 16 18 C 0.35 7.69 8.04 -156.23 -1.26 6.43 16 19 C -0.29 -5.36 5.46 -106.82 -0.58 -5.95 16 20 C 0.07 1.25 11.35 -17.11 -0.19 1.05 16 21 N -0.24 -5.03 12.45 30.80 0.38 -4.65 16 22 N -0.33 -7.91 3.63 -61.64 -0.22 -8.13 16 23 C 0.26 7.03 6.19 -5.20 -0.03 7.00 16 24 C -0.54 -15.35 9.39 -34.44 -0.32 -15.68 16 25 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 26 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 27 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 28 Si 0.91 21.84 29.54 -169.99 -5.02 16.81 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 31 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 34 H 0.07 0.51 5.96 -51.93 -0.31 0.20 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.13 1.60 7.30 -52.49 -0.38 1.22 16 39 H 0.08 0.62 8.05 -51.93 -0.42 0.21 16 40 H 0.08 0.53 7.47 -51.93 -0.39 0.14 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.76 7.10 -51.93 -0.37 0.39 16 45 H 0.20 2.47 8.06 -52.49 -0.42 2.05 16 46 H 0.19 2.32 7.98 -52.48 -0.42 1.90 16 47 H 0.05 1.49 8.14 -51.92 -0.42 1.07 16 48 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 49 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -32.80 401.53 -13.07 -45.87 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.76 Total: 1.79 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -7.38 Total: -5.72 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.04 Total: -64.80 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.80 -13.07 -45.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.538 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds