Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99557 * 2 1 4 4 H 1.48502 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47224 * 299.99814 * 3 2 1 6 6 H 1.48499 * 109.47250 * 60.00004 * 3 2 1 7 7 C 1.37867 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99948 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47031 * 179.97438 * 9 7 2 11 11 N 1.40055 * 125.86960 * 89.97944 * 10 9 7 12 12 C 1.30251 * 109.69573 * 180.02562 * 11 10 9 13 13 C 1.41169 * 108.46469 * 0.26822 * 12 11 10 14 14 C 1.36308 * 125.87150 * 270.01392 * 10 9 7 15 15 N 1.33192 * 134.62176 * 0.02562 * 14 10 9 16 16 C 1.31504 * 120.68757 * 179.97438 * 15 14 10 17 17 N 1.32124 * 122.64438 * 359.97438 * 16 15 14 18 18 C 1.32865 * 121.19484 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81358 * 179.97438 * 18 17 16 20 20 C 1.48562 * 111.00373 * 115.41697 * 19 18 17 21 21 C 1.54374 * 104.59371 * 200.95505 * 20 19 18 22 22 C 1.54261 * 105.05972 * 23.85363 * 21 20 19 23 23 C 1.48552 * 111.00121 * 359.97438 * 19 18 17 24 24 H 1.08999 * 110.41452 * 40.14581 * 23 19 18 25 25 C 1.53008 * 110.41426 * 277.82434 * 23 19 18 26 26 C 1.50697 * 109.47047 * 64.99613 * 25 23 19 27 27 C 1.38229 * 120.00233 * 269.73041 * 26 25 23 28 28 C 1.38242 * 120.00031 * 179.79177 * 27 26 25 29 29 C 1.38234 * 120.00002 * 0.45869 * 28 27 26 30 30 C 1.38244 * 119.99635 * 359.77121 * 29 28 27 31 31 C 1.38233 * 120.00168 * 0.02562 * 30 29 28 32 32 H 0.96999 * 120.00585 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.46976 * 60.00014 * 9 7 2 34 34 H 1.08994 * 109.46973 * 300.00363 * 9 7 2 35 35 H 1.08002 * 125.76342 * 179.97438 * 12 11 10 36 36 H 1.07998 * 118.68095 * 180.02562 * 16 15 14 37 37 H 1.08998 * 110.40474 * 319.73950 * 20 19 18 38 38 H 1.08994 * 110.41119 * 82.17573 * 20 19 18 39 39 H 1.08994 * 110.32569 * 264.95673 * 21 20 19 40 40 H 1.09005 * 110.32203 * 142.74382 * 21 20 19 41 41 H 1.09004 * 110.32419 * 241.09909 * 22 21 20 42 42 H 1.09002 * 110.41122 * 118.94297 * 22 21 20 43 43 H 1.08996 * 109.47449 * 185.00259 * 25 23 19 44 44 H 1.09005 * 109.46967 * 304.99942 * 25 23 19 45 45 H 1.08000 * 120.00199 * 359.97438 * 27 26 25 46 46 H 1.08001 * 119.99923 * 180.25579 * 28 27 26 47 47 H 1.07997 * 120.00043 * 179.79306 * 29 28 27 48 48 H 1.07994 * 119.99475 * 179.97438 * 30 29 28 49 49 H 1.07992 * 119.99871 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 7 2.7369 -4.2360 1.1355 12 6 3.5502 -5.1865 0.7727 13 6 3.5915 -5.2254 -0.6379 14 6 2.7225 -4.2195 -1.1040 15 7 2.5801 -4.0518 -2.4176 16 6 3.2334 -4.8149 -3.2663 17 7 4.0541 -5.7741 -2.8765 18 6 4.2629 -6.0194 -1.5875 19 7 5.1222 -7.0245 -1.1888 20 6 6.2935 -6.4674 -0.4644 21 6 7.3726 -7.5666 -0.5664 22 6 6.9914 -8.3879 -1.8154 23 6 5.7137 -7.7161 -2.3629 24 1 5.9647 -6.9960 -3.1417 25 6 4.7462 -8.7705 -2.9045 26 6 3.5102 -8.0920 -3.4364 27 6 2.4300 -7.8711 -2.6028 28 6 1.2978 -7.2448 -3.0897 29 6 1.2423 -6.8481 -4.4127 30 6 2.3209 -7.0734 -5.2477 31 6 3.4546 -7.6958 -4.7597 32 1 -0.4851 0.8400 -0.0004 33 1 0.6248 -2.5571 -0.8897 34 1 0.6241 -2.5567 0.8902 35 1 4.1034 -5.8323 1.4385 36 1 3.0941 -4.6504 -4.3246 37 1 6.6371 -5.5515 -0.9451 38 1 6.0407 -6.2785 0.5788 39 1 7.3549 -8.1981 0.3218 40 1 8.3582 -7.1189 -0.6941 41 1 6.7867 -9.4226 -1.5402 42 1 7.7894 -8.3449 -2.5567 43 1 5.2286 -9.3282 -3.7071 44 1 4.4685 -9.4548 -2.1027 45 1 2.4715 -8.1850 -1.5703 46 1 0.4554 -7.0684 -2.4373 47 1 0.3566 -6.3618 -4.7940 48 1 2.2774 -6.7638 -6.2814 49 1 4.2969 -7.8722 -5.4120 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519971.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = 167.673967 kcal Electronic energy + Delta-G solvation = -33871.028822 eV Core-core repulsion = 29800.372409 eV Total energy + Delta-G solvation = -4070.656412 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.71688 -40.02719 -38.60963 -37.86827 -34.13998 -33.40107 -33.26481 -31.50523 -31.14430 -30.63060 -29.38428 -29.01775 -27.19896 -25.66325 -23.88849 -23.72137 -22.64608 -22.33831 -21.69123 -20.95075 -20.39634 -19.77818 -17.58816 -17.31081 -16.67759 -16.63049 -16.33943 -15.90017 -15.18319 -14.98134 -14.88674 -14.72937 -14.45662 -14.24198 -13.88081 -13.57393 -13.40331 -13.17641 -13.14502 -12.94993 -12.80951 -12.41532 -12.11572 -11.95553 -11.76271 -11.63375 -11.59957 -11.37050 -11.12166 -11.03624 -10.83799 -10.77871 -10.74497 -10.60264 -10.55132 -10.30244 -10.11278 -9.76171 -9.25945 -8.80852 -8.61898 -8.60823 -8.35052 -8.23239 -7.65729 -6.22916 -4.29461 1.10145 1.61630 1.69149 1.90825 2.97996 3.04498 3.22015 3.29119 3.35427 3.52365 4.00771 4.25811 4.28436 4.32181 4.43143 4.70095 4.74000 4.75854 4.90496 4.98774 5.08881 5.12895 5.13819 5.19703 5.23025 5.28845 5.33672 5.36214 5.42834 5.54186 5.58403 5.65110 5.69193 5.71807 5.75552 5.78860 5.84094 5.89202 6.04879 6.26161 6.27369 6.37363 6.39883 6.69232 6.71285 6.79239 6.87385 7.02484 7.10171 7.18270 7.27623 7.37010 7.66961 7.84567 7.90271 8.21174 8.69551 8.78781 9.35699 10.85257 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.003527 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.557130 B = 7935.809451 C = 9246.274345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.265 3.735 10 N -0.335 5.335 11 N -0.238 5.238 12 C 0.069 3.931 13 C -0.290 4.290 14 C 0.352 3.648 15 N -0.530 5.530 16 C 0.351 3.649 17 N -0.571 5.571 18 C 0.422 3.578 19 N -0.449 5.449 20 C 0.045 3.955 21 C -0.123 4.123 22 C -0.124 4.124 23 C 0.077 3.923 24 H 0.084 0.916 25 C -0.064 4.064 26 C -0.040 4.040 27 C -0.115 4.115 28 C -0.118 4.118 29 C -0.124 4.124 30 C -0.123 4.123 31 C -0.099 4.099 32 H 0.267 0.733 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.184 0.816 36 H 0.185 0.815 37 H 0.055 0.945 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 -19.856 -6.987 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.148 3.852 10 N -0.122 5.122 11 N -0.053 5.053 12 C -0.127 4.127 13 C -0.306 4.306 14 C 0.103 3.897 15 N -0.251 5.251 16 C 0.057 3.943 17 N -0.294 5.294 18 C 0.172 3.828 19 N -0.168 5.168 20 C -0.081 4.081 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.030 4.030 24 H 0.102 0.898 25 C -0.101 4.101 26 C -0.040 4.040 27 C -0.133 4.133 28 C -0.136 4.136 29 C -0.142 4.142 30 C -0.141 4.141 31 C -0.117 4.117 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.201 0.799 36 H 0.202 0.798 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.131 0.869 48 H 0.132 0.868 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.016 -19.065 -6.498 22.957 hybrid contribution 0.921 1.143 -0.198 1.481 sum 11.937 -17.922 -6.696 22.550 Atomic orbital electron populations 1.69925 1.05994 1.27515 1.49426 1.24890 0.94967 0.99339 0.94458 0.86302 0.79920 0.82613 0.77819 1.19745 1.20591 1.20609 1.21275 0.93525 0.89692 1.52605 0.92085 1.19769 0.85680 0.79879 0.99892 1.49436 1.36026 1.27970 0.98750 1.76950 1.11112 1.07790 1.09482 1.23495 0.98997 0.97538 0.92635 1.19660 1.09827 1.05724 0.95377 1.18997 0.91660 0.90557 0.88509 1.67490 1.27800 1.29775 1.00065 1.24265 0.86477 0.84683 0.98874 1.68532 1.23768 1.21742 1.15361 1.19406 0.90146 0.85540 0.87660 1.62103 1.13853 1.20154 1.20671 1.23157 0.88166 0.96871 0.99870 1.22311 0.97941 0.96947 0.98879 1.22423 0.96544 0.99983 0.97222 1.22665 0.92685 0.95794 0.91890 0.89807 1.20544 0.93132 0.96273 1.00171 1.19457 0.94275 0.96822 0.93491 1.20950 0.93583 0.99783 0.98984 1.21004 0.98082 0.98860 0.95697 1.21003 0.98721 1.00567 0.93950 1.20982 0.93959 0.99931 0.99219 1.20721 0.97316 0.98755 0.94880 0.92318 0.92393 0.92874 0.79896 0.79846 0.92688 0.88986 0.90503 0.90841 0.90646 0.90917 0.90588 0.90744 0.87071 0.87403 0.86868 0.86785 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.26 7.07 6.19 -5.19 -0.03 7.04 16 10 N -0.33 -7.98 3.63 -61.64 -0.22 -8.20 16 11 N -0.24 -5.11 12.45 30.80 0.38 -4.73 16 12 C 0.07 1.20 11.42 -17.11 -0.20 1.00 16 13 C -0.29 -5.24 5.81 -106.81 -0.62 -5.86 16 14 C 0.35 7.64 8.04 -156.24 -1.26 6.38 16 15 N -0.53 -11.03 10.47 -13.97 -0.15 -11.17 16 16 C 0.35 5.89 8.97 -92.12 -0.83 5.07 16 17 N -0.57 -8.53 4.45 -13.62 -0.06 -8.59 16 18 C 0.42 6.35 3.93 -154.85 -0.61 5.74 16 19 N -0.45 -5.26 5.05 -160.98 -0.81 -6.08 16 20 C 0.05 0.46 5.93 -2.18 -0.01 0.44 16 21 C -0.12 -0.88 7.00 -25.35 -0.18 -1.05 16 22 C -0.12 -0.87 6.55 -25.34 -0.17 -1.04 16 23 C 0.08 0.75 2.35 -66.06 -0.16 0.59 16 24 H 0.08 0.94 7.17 -51.93 -0.37 0.57 16 25 C -0.06 -0.60 4.97 -27.88 -0.14 -0.74 16 26 C -0.04 -0.47 3.08 -104.63 -0.32 -0.79 16 27 C -0.11 -1.57 6.74 -39.58 -0.27 -1.84 16 28 C -0.12 -1.70 9.04 -39.58 -0.36 -2.06 16 29 C -0.12 -1.62 8.88 -39.58 -0.35 -1.97 16 30 C -0.12 -1.40 8.73 -39.58 -0.35 -1.75 16 31 C -0.10 -1.09 8.52 -39.58 -0.34 -1.43 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.06 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.18 2.38 7.34 -52.49 -0.39 1.99 16 36 H 0.19 2.68 7.47 -52.49 -0.39 2.29 16 37 H 0.05 0.63 7.97 -51.93 -0.41 0.22 16 38 H 0.09 0.88 6.97 -51.93 -0.36 0.52 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 44 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 45 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 48 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 49 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 389.25 15.07 5.87 5.87 Total: -1.00 -31.58 389.25 -12.82 -44.40 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.95 Total: 2.85 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -6.59 Total: -6.00 kcal Atomic # 7 Polarization: -63.72 SS G_CDS: -0.12 Total: -63.84 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.58 -12.82 -44.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519971.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.072 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds