Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99557 * 2 1 4 4 H 1.48502 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47224 * 299.99814 * 3 2 1 6 6 H 1.48499 * 109.47250 * 60.00004 * 3 2 1 7 7 C 1.37867 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00453 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99948 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47031 * 179.97438 * 9 7 2 11 11 N 1.40055 * 125.86960 * 89.97944 * 10 9 7 12 12 C 1.30251 * 109.69573 * 180.02562 * 11 10 9 13 13 C 1.41169 * 108.46469 * 0.26822 * 12 11 10 14 14 C 1.36308 * 125.87150 * 270.01392 * 10 9 7 15 15 N 1.33192 * 134.62176 * 0.02562 * 14 10 9 16 16 C 1.31504 * 120.68757 * 179.97438 * 15 14 10 17 17 N 1.32124 * 122.64438 * 359.97438 * 16 15 14 18 18 C 1.32865 * 121.19484 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81358 * 179.97438 * 18 17 16 20 20 C 1.48562 * 111.00373 * 115.41697 * 19 18 17 21 21 C 1.54374 * 104.59371 * 200.95505 * 20 19 18 22 22 C 1.54261 * 105.05972 * 23.85363 * 21 20 19 23 23 C 1.48552 * 111.00121 * 359.97438 * 19 18 17 24 24 H 1.08999 * 110.41452 * 40.14581 * 23 19 18 25 25 C 1.53008 * 110.41426 * 277.82434 * 23 19 18 26 26 C 1.50697 * 109.47047 * 64.99613 * 25 23 19 27 27 C 1.38229 * 120.00233 * 269.73041 * 26 25 23 28 28 C 1.38242 * 120.00031 * 179.79177 * 27 26 25 29 29 C 1.38234 * 120.00002 * 0.45869 * 28 27 26 30 30 C 1.38244 * 119.99635 * 359.77121 * 29 28 27 31 31 C 1.38233 * 120.00168 * 0.02562 * 30 29 28 32 32 H 0.96999 * 120.00585 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.46976 * 60.00014 * 9 7 2 34 34 H 1.08994 * 109.46973 * 300.00363 * 9 7 2 35 35 H 1.08002 * 125.76342 * 179.97438 * 12 11 10 36 36 H 1.07998 * 118.68095 * 180.02562 * 16 15 14 37 37 H 1.08998 * 110.40474 * 319.73950 * 20 19 18 38 38 H 1.08994 * 110.41119 * 82.17573 * 20 19 18 39 39 H 1.08994 * 110.32569 * 264.95673 * 21 20 19 40 40 H 1.09005 * 110.32203 * 142.74382 * 21 20 19 41 41 H 1.09004 * 110.32419 * 241.09909 * 22 21 20 42 42 H 1.09002 * 110.41122 * 118.94297 * 22 21 20 43 43 H 1.08996 * 109.47449 * 185.00259 * 25 23 19 44 44 H 1.09005 * 109.46967 * 304.99942 * 25 23 19 45 45 H 1.08000 * 120.00199 * 359.97438 * 27 26 25 46 46 H 1.08001 * 119.99923 * 180.25579 * 28 27 26 47 47 H 1.07997 * 120.00043 * 179.79306 * 29 28 27 48 48 H 1.07994 * 119.99475 * 179.97438 * 30 29 28 49 49 H 1.07992 * 119.99871 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 7 2.7369 -4.2360 1.1355 12 6 3.5502 -5.1865 0.7727 13 6 3.5915 -5.2254 -0.6379 14 6 2.7225 -4.2195 -1.1040 15 7 2.5801 -4.0518 -2.4176 16 6 3.2334 -4.8149 -3.2663 17 7 4.0541 -5.7741 -2.8765 18 6 4.2629 -6.0194 -1.5875 19 7 5.1222 -7.0245 -1.1888 20 6 6.2935 -6.4674 -0.4644 21 6 7.3726 -7.5666 -0.5664 22 6 6.9914 -8.3879 -1.8154 23 6 5.7137 -7.7161 -2.3629 24 1 5.9647 -6.9960 -3.1417 25 6 4.7462 -8.7705 -2.9045 26 6 3.5102 -8.0920 -3.4364 27 6 2.4300 -7.8711 -2.6028 28 6 1.2978 -7.2448 -3.0897 29 6 1.2423 -6.8481 -4.4127 30 6 2.3209 -7.0734 -5.2477 31 6 3.4546 -7.6958 -4.7597 32 1 -0.4851 0.8400 -0.0004 33 1 0.6248 -2.5571 -0.8897 34 1 0.6241 -2.5567 0.8902 35 1 4.1034 -5.8323 1.4385 36 1 3.0941 -4.6504 -4.3246 37 1 6.6371 -5.5515 -0.9451 38 1 6.0407 -6.2785 0.5788 39 1 7.3549 -8.1981 0.3218 40 1 8.3582 -7.1189 -0.6941 41 1 6.7867 -9.4226 -1.5402 42 1 7.7894 -8.3449 -2.5567 43 1 5.2286 -9.3282 -3.7071 44 1 4.4685 -9.4548 -2.1027 45 1 2.4715 -8.1850 -1.5703 46 1 0.4554 -7.0684 -2.4373 47 1 0.3566 -6.3618 -4.7940 48 1 2.2774 -6.7638 -6.2814 49 1 4.2969 -7.8722 -5.4120 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065519971.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = 150.969510 kcal Electronic energy + Delta-G solvation = -33871.753181 eV Core-core repulsion = 29800.372409 eV Total energy + Delta-G solvation = -4071.380772 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.08045 -41.16846 -39.54773 -39.19508 -35.87967 -34.90377 -34.16961 -33.23986 -32.42057 -31.61430 -30.37469 -30.15712 -29.14162 -26.50035 -25.58028 -25.13988 -24.12984 -23.35142 -22.72384 -21.78523 -21.50300 -20.99674 -19.09607 -18.76818 -18.53390 -17.77030 -17.56771 -16.93627 -16.69373 -16.24529 -16.05539 -15.83754 -15.74212 -15.43362 -15.15489 -14.97541 -14.82098 -14.20488 -14.15752 -14.07958 -13.84312 -13.74725 -13.60304 -13.25788 -13.06245 -12.78947 -12.74850 -12.60497 -12.49824 -12.38604 -12.34459 -12.11199 -12.05972 -11.74110 -11.68523 -11.54088 -11.40609 -11.26989 -10.78986 -10.47753 -10.15417 -9.77300 -9.68106 -9.53185 -8.93241 -8.38089 -6.55711 -0.23312 0.39616 0.67578 0.69444 1.29904 1.32629 1.36446 1.47881 1.57759 2.28879 2.45438 2.91277 2.93409 3.05145 3.18885 3.30335 3.53268 3.68987 3.82626 3.97704 4.04410 4.08161 4.12220 4.14255 4.25677 4.35581 4.36615 4.40708 4.55905 4.62953 4.67320 4.78340 4.79895 4.82424 4.85931 4.92521 4.94068 5.08815 5.10753 5.18494 5.24548 5.31280 5.33363 5.36585 5.44055 5.48930 5.60917 5.73280 5.74458 5.78734 5.85217 5.90931 6.04139 6.27095 6.31768 6.50910 6.65254 7.13918 7.34782 8.69602 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.011764 B = 0.003527 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.557130 B = 7935.809451 C = 9246.274345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.976 3.024 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.550 4.550 8 H 0.045 0.955 9 C 0.287 3.713 10 N -0.368 5.368 11 N -0.282 5.282 12 C 0.098 3.902 13 C -0.301 4.301 14 C 0.329 3.671 15 N -0.577 5.577 16 C 0.361 3.639 17 N -0.554 5.554 18 C 0.442 3.558 19 N -0.448 5.448 20 C 0.039 3.961 21 C -0.115 4.115 22 C -0.115 4.115 23 C 0.074 3.926 24 H 0.075 0.925 25 C -0.061 4.061 26 C -0.040 4.040 27 C -0.129 4.129 28 C -0.141 4.141 29 C -0.137 4.137 30 C -0.118 4.118 31 C -0.096 4.096 32 H 0.274 0.726 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.230 0.770 36 H 0.205 0.795 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.112 0.888 48 H 0.139 0.861 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.376 -21.776 -8.298 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.589 4.589 8 H 0.064 0.936 9 C 0.168 3.832 10 N -0.155 5.155 11 N -0.096 5.096 12 C -0.098 4.098 13 C -0.317 4.317 14 C 0.082 3.918 15 N -0.301 5.301 16 C 0.069 3.931 17 N -0.277 5.277 18 C 0.192 3.808 19 N -0.166 5.166 20 C -0.086 4.086 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.032 4.032 24 H 0.093 0.907 25 C -0.099 4.099 26 C -0.041 4.041 27 C -0.147 4.147 28 C -0.160 4.160 29 C -0.155 4.155 30 C -0.136 4.136 31 C -0.114 4.114 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.246 0.754 36 H 0.222 0.778 37 H 0.059 0.941 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.130 0.870 48 H 0.157 0.843 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.065 -21.034 -7.809 27.025 hybrid contribution -0.263 1.509 0.113 1.536 sum 14.802 -19.526 -7.696 25.682 Atomic orbital electron populations 1.70023 1.07422 1.28854 1.49485 1.25803 0.95894 1.02886 0.93511 0.85243 0.78233 0.77960 0.78604 1.19840 1.19396 1.19160 1.21391 0.92820 0.91105 1.53554 0.93640 1.19080 0.85918 0.80979 0.97194 1.49059 1.37384 1.28716 1.00348 1.76892 1.13539 1.09934 1.09274 1.24223 0.96666 0.95787 0.93099 1.19825 1.10011 1.05806 0.96058 1.19329 0.92402 0.91390 0.88677 1.67459 1.30133 1.32151 1.00315 1.24705 0.85265 0.83927 0.99224 1.68681 1.23060 1.20884 1.15095 1.19645 0.89510 0.84750 0.86938 1.62125 1.14290 1.18446 1.21752 1.23322 0.88164 0.97583 0.99576 1.22324 0.97296 0.95977 0.99651 1.22431 0.95252 1.00239 0.97386 1.22813 0.93956 0.95600 0.90834 0.90725 1.20633 0.91955 0.96119 1.01181 1.19762 0.94446 0.96243 0.93612 1.20905 0.94301 1.00725 0.98778 1.20961 0.98091 1.00582 0.96322 1.21094 0.99713 1.01076 0.93666 1.21273 0.93259 0.99032 1.00066 1.21084 0.97866 0.97558 0.94880 0.91690 0.95268 0.95328 0.75385 0.77834 0.94094 0.88565 0.89149 0.89368 0.89235 0.89003 0.87619 0.90571 0.88483 0.89952 0.87000 0.84309 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.29 21.44 0.28 -54.95 16 2 C 0.02 1.15 5.46 84.65 0.46 1.61 16 3 Si 0.98 45.42 29.54 68.60 2.03 47.45 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -33.21 9.39 25.60 0.24 -32.97 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 9 C 0.29 16.66 6.19 85.63 0.53 17.19 16 10 N -0.37 -18.80 3.63 -348.93 -1.27 -20.06 16 11 N -0.28 -12.70 12.45 -56.46 -0.70 -13.40 16 12 C 0.10 3.40 11.42 85.65 0.98 4.38 16 13 C -0.30 -11.03 5.81 -21.28 -0.12 -11.16 16 14 C 0.33 15.10 8.04 134.15 1.08 16.18 16 15 N -0.58 -25.22 10.47 -198.11 -2.07 -27.30 16 16 C 0.36 12.19 8.97 180.87 1.62 13.82 16 17 N -0.55 -15.92 4.45 -197.01 -0.88 -16.80 16 18 C 0.44 12.84 3.93 133.64 0.52 13.36 16 19 N -0.45 -9.33 5.05 -663.22 -3.35 -12.68 16 20 C 0.04 0.66 5.93 86.45 0.51 1.18 16 21 C -0.11 -1.11 7.00 31.49 0.22 -0.89 16 22 C -0.12 -1.03 6.55 31.49 0.21 -0.82 16 23 C 0.07 1.16 2.35 45.07 0.11 1.26 16 24 H 0.07 1.37 7.17 -2.39 -0.02 1.35 16 25 C -0.06 -0.92 4.97 29.85 0.15 -0.77 16 26 C -0.04 -0.85 3.08 -19.87 -0.06 -0.91 16 27 C -0.13 -3.53 6.74 22.27 0.15 -3.38 16 28 C -0.14 -4.29 9.04 22.27 0.20 -4.09 16 29 C -0.14 -3.63 8.88 22.27 0.20 -3.43 16 30 C -0.12 -2.47 8.73 22.27 0.19 -2.27 16 31 C -0.10 -1.83 8.52 22.27 0.19 -1.64 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.23 5.46 7.34 -2.91 -0.02 5.44 16 36 H 0.21 5.81 7.47 -2.91 -0.02 5.78 16 37 H 0.04 0.84 7.97 -2.39 -0.02 0.82 16 38 H 0.10 1.56 6.97 -2.39 -0.02 1.54 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.09 0.62 7.86 -2.39 -0.02 0.60 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.11 1.02 8.09 -2.39 -0.02 1.00 16 44 H 0.08 1.16 8.08 -2.38 -0.02 1.14 16 45 H 0.10 2.86 8.06 -2.91 -0.02 2.84 16 46 H 0.08 2.81 8.06 -2.91 -0.02 2.78 16 47 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 48 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 49 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -74.91 389.25 2.38 -72.53 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.96 Total: 18.56 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 7.38 Total: 6.65 kcal Atomic # 7 Polarization: -137.20 SS G_CDS: -7.98 Total: -145.18 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.91 2.38 -72.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519971.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.499 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds