Wall clock time and date at job start Tue Mar 31 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00204 * 2 1 4 4 H 1.48503 * 109.47437 * 239.99986 * 3 2 1 5 5 H 1.48501 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47220 * 119.99905 * 3 2 1 7 7 C 1.37879 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99418 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46805 * 180.02562 * 9 7 2 11 11 N 1.40069 * 125.87126 * 270.70824 * 10 9 7 12 12 C 1.30252 * 109.69591 * 179.97438 * 11 10 9 13 13 C 1.41165 * 108.46731 * 359.54448 * 12 11 10 14 14 C 1.36313 * 125.87353 * 89.99905 * 10 9 7 15 15 N 1.33197 * 134.62035 * 359.97438 * 14 10 9 16 16 C 1.31506 * 120.68365 * 180.02562 * 15 14 10 17 17 N 1.32119 * 122.64923 * 359.97438 * 16 15 14 18 18 C 1.32868 * 121.19341 * 0.02562 * 17 16 15 19 19 N 1.38101 * 120.81254 * 179.97438 * 18 17 16 20 20 C 1.48532 * 111.00131 * 242.60411 * 19 18 17 21 21 C 1.54936 * 103.22831 * 159.72439 * 20 19 18 22 22 C 1.54594 * 102.91924 * 322.58232 * 21 20 19 23 23 C 1.47896 * 111.00211 * 0.02562 * 19 18 17 24 24 H 1.09006 * 110.08167 * 333.59825 * 23 19 18 25 25 C 1.52996 * 109.91912 * 94.80226 * 23 19 18 26 26 C 1.50702 * 109.47203 * 294.04441 * 25 23 19 27 27 C 1.38234 * 119.99895 * 269.72772 * 26 25 23 28 28 C 1.38240 * 120.00061 * 180.34228 * 27 26 25 29 29 C 1.38234 * 119.99689 * 359.90912 * 28 27 26 30 30 C 1.38235 * 120.00205 * 0.04302 * 29 28 27 31 31 C 1.38230 * 119.99899 * 0.02562 * 30 29 28 32 32 H 0.97014 * 120.00030 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47670 * 60.00562 * 9 7 2 34 34 H 1.08998 * 109.47653 * 299.99625 * 9 7 2 35 35 H 1.07997 * 125.77018 * 179.52452 * 12 11 10 36 36 H 1.07999 * 118.67185 * 179.97438 * 16 15 14 37 37 H 1.08996 * 110.67209 * 41.28183 * 20 19 18 38 38 H 1.09004 * 110.66381 * 278.15511 * 20 19 18 39 39 H 1.09006 * 110.72326 * 204.22416 * 21 20 19 40 40 H 1.09000 * 110.88109 * 81.01738 * 21 20 19 41 41 H 1.09000 * 110.31312 * 263.04050 * 22 21 20 42 42 H 1.09009 * 110.39071 * 140.91806 * 22 21 20 43 43 H 1.09003 * 109.47252 * 174.04619 * 25 23 19 44 44 H 1.09001 * 109.47630 * 54.04673 * 25 23 19 45 45 H 1.08001 * 120.00279 * 0.27436 * 27 26 25 46 46 H 1.07997 * 119.99852 * 179.97438 * 28 27 26 47 47 H 1.07999 * 119.99751 * 180.02562 * 29 28 27 48 48 H 1.08001 * 119.99730 * 180.02562 * 30 29 28 49 49 H 1.08000 * 120.00376 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 7 2.7469 -4.2273 -1.1355 12 6 3.5568 -5.1807 -0.7726 13 6 3.5886 -5.2278 0.6379 14 6 2.7220 -4.2198 1.1040 15 7 2.5794 -4.0523 2.4177 16 6 3.2325 -4.8156 3.2663 17 7 4.0524 -5.7755 2.8765 18 6 4.2614 -6.0206 1.5875 19 7 5.1205 -7.0256 1.1888 20 6 6.2675 -6.4731 0.4238 21 6 7.3347 -7.5915 0.5276 22 6 7.1434 -8.1191 1.9681 23 6 5.7093 -7.7144 2.3577 24 1 5.7333 -7.0421 3.2153 25 6 4.8891 -8.9609 2.6958 26 6 3.5156 -8.5482 3.1587 27 6 3.2788 -8.3177 4.5009 28 6 2.0172 -7.9460 4.9265 29 6 0.9928 -7.8030 4.0094 30 6 1.2297 -8.0325 2.6670 31 6 2.4910 -8.4056 2.2417 32 1 -0.4851 0.8402 0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6246 -2.5571 0.8897 35 1 4.1102 -5.8264 -1.4384 36 1 3.0929 -4.6512 4.3246 37 1 6.6287 -5.5529 0.8828 38 1 5.9895 -6.3020 -0.6163 39 1 8.3364 -7.1822 0.3965 40 1 7.1434 -8.3798 -0.2006 41 1 7.8641 -7.6535 2.6404 42 1 7.2500 -9.2037 1.9926 43 1 5.3869 -9.5195 3.4884 44 1 4.8002 -9.5890 1.8094 45 1 4.0793 -8.4291 5.2174 46 1 1.8322 -7.7663 5.9752 47 1 0.0072 -7.5121 4.3418 48 1 0.4294 -7.9203 1.9505 49 1 2.6761 -8.5853 1.1930 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:59 Heat of formation + Delta-G solvation = 156.168737 kcal Electronic energy + Delta-G solvation = -33487.080172 eV Core-core repulsion = 29415.924856 eV Total energy + Delta-G solvation = -4071.155317 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.64263 -39.99615 -38.64236 -37.95948 -34.18032 -33.39242 -33.22688 -31.51854 -31.20341 -30.67380 -29.36729 -29.06284 -27.20340 -25.69787 -23.87698 -23.71316 -22.65199 -22.39548 -21.68152 -21.09321 -20.39485 -19.80289 -17.63076 -17.26572 -16.72620 -16.67336 -16.35473 -15.72777 -15.28506 -14.99344 -14.85999 -14.73355 -14.49527 -14.17365 -13.89732 -13.56163 -13.40017 -13.22283 -13.15802 -12.95175 -12.82371 -12.49802 -12.13211 -12.02584 -11.84780 -11.69995 -11.57539 -11.32835 -11.14722 -11.06395 -10.84882 -10.82106 -10.77826 -10.59707 -10.58354 -10.30021 -10.11582 -9.79933 -9.23813 -8.73881 -8.68076 -8.60718 -8.46941 -8.27508 -7.79504 -6.23005 -4.29811 1.09831 1.56984 1.62714 1.86087 2.96162 3.02946 3.24862 3.28113 3.32713 3.49946 3.96839 4.25377 4.27263 4.31193 4.40751 4.67125 4.72078 4.76039 4.90547 4.96673 5.07642 5.10476 5.12675 5.17804 5.18455 5.25766 5.29985 5.38838 5.42296 5.54799 5.58048 5.63369 5.66639 5.69489 5.74079 5.77276 5.82581 5.87709 6.08842 6.21617 6.23175 6.37443 6.42017 6.65487 6.68442 6.72944 6.83720 7.01816 7.09155 7.17053 7.21879 7.35529 7.65928 7.83289 7.89730 8.19437 8.67946 8.76835 9.35218 10.85127 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.003368 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.961398 B = 8312.465729 C = 9584.905567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.265 3.735 10 N -0.334 5.334 11 N -0.237 5.237 12 C 0.069 3.931 13 C -0.291 4.291 14 C 0.351 3.649 15 N -0.532 5.532 16 C 0.350 3.650 17 N -0.579 5.579 18 C 0.429 3.571 19 N -0.452 5.452 20 C 0.047 3.953 21 C -0.122 4.122 22 C -0.129 4.129 23 C 0.070 3.930 24 H 0.096 0.904 25 C -0.062 4.062 26 C -0.060 4.060 27 C -0.102 4.102 28 C -0.121 4.121 29 C -0.124 4.124 30 C -0.120 4.120 31 C -0.106 4.106 32 H 0.268 0.732 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.111 0.889 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 -20.327 6.424 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.148 3.852 10 N -0.120 5.120 11 N -0.053 5.053 12 C -0.126 4.126 13 C -0.307 4.307 14 C 0.103 3.897 15 N -0.254 5.254 16 C 0.056 3.944 17 N -0.303 5.303 18 C 0.179 3.821 19 N -0.170 5.170 20 C -0.079 4.079 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.037 4.037 24 H 0.114 0.886 25 C -0.100 4.100 26 C -0.060 4.060 27 C -0.120 4.120 28 C -0.139 4.139 29 C -0.142 4.142 30 C -0.138 4.138 31 C -0.124 4.124 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.201 0.799 36 H 0.205 0.795 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.924 -19.539 5.955 23.164 hybrid contribution 0.923 1.106 0.233 1.459 sum 11.847 -18.433 6.188 22.769 Atomic orbital electron populations 1.69908 1.06007 1.27748 1.49183 1.24887 0.94968 0.99322 0.94410 0.86414 0.79468 0.81928 0.78852 1.19997 1.20846 1.20003 1.21197 0.93453 0.89715 1.52953 0.92176 1.19771 0.85657 0.79840 0.99925 1.49471 1.35660 1.28164 0.98750 1.76961 1.10872 1.08012 1.09442 1.23502 0.99093 0.97413 0.92593 1.19657 1.09942 1.05731 0.95413 1.19010 0.91619 0.90592 0.88498 1.67501 1.27809 1.29936 1.00154 1.24343 0.86233 0.84813 0.98991 1.68265 1.23806 1.22620 1.15616 1.19387 0.89937 0.85134 0.87607 1.61396 1.14872 1.20585 1.20163 1.23307 0.88395 0.96927 0.99267 1.22506 0.98332 0.97974 0.97212 1.22527 0.95709 1.01840 0.96671 1.22499 0.91965 0.95965 0.93292 0.88621 1.20595 0.92217 0.96161 1.01011 1.19592 0.94717 0.98517 0.93222 1.20812 0.96393 0.99723 0.95063 1.20992 0.93380 1.00460 0.99038 1.21031 0.99023 1.00730 0.93456 1.21064 0.97105 0.99851 0.95820 1.20955 0.92651 0.99673 0.99086 0.92190 0.92834 0.92368 0.79852 0.79514 0.92516 0.88879 0.90526 0.90277 0.91110 0.90535 0.90747 0.90768 0.86849 0.86767 0.86899 0.87125 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.28 55.43 0.74 -25.08 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 3 Si 0.91 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -15.27 9.39 -34.44 -0.32 -15.59 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.26 7.09 6.19 -5.19 -0.03 7.06 16 10 N -0.33 -7.96 3.63 -61.64 -0.22 -8.19 16 11 N -0.24 -5.09 12.45 30.80 0.38 -4.71 16 12 C 0.07 1.20 11.33 -17.11 -0.19 1.00 16 13 C -0.29 -5.28 5.80 -106.81 -0.62 -5.90 16 14 C 0.35 7.69 8.04 -156.23 -1.26 6.43 16 15 N -0.53 -11.18 10.47 -13.97 -0.15 -11.33 16 16 C 0.35 5.91 12.24 -92.12 -1.13 4.79 16 17 N -0.58 -8.79 6.45 -13.62 -0.09 -8.87 16 18 C 0.43 6.49 4.39 -154.85 -0.68 5.81 16 19 N -0.45 -5.28 4.70 -161.38 -0.76 -6.04 16 20 C 0.05 0.47 5.92 -1.90 -0.01 0.45 16 21 C -0.12 -0.86 7.06 -24.87 -0.18 -1.04 16 22 C -0.13 -0.93 6.57 -25.36 -0.17 -1.09 16 23 C 0.07 0.69 2.44 -66.63 -0.16 0.53 16 24 H 0.10 1.11 6.55 -51.93 -0.34 0.77 16 25 C -0.06 -0.58 4.81 -27.88 -0.13 -0.71 16 26 C -0.06 -0.70 3.34 -104.62 -0.35 -1.05 16 27 C -0.10 -1.14 9.36 -39.58 -0.37 -1.51 16 28 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 29 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 30 C -0.12 -1.67 10.05 -39.59 -0.40 -2.07 16 31 C -0.11 -1.40 7.94 -39.59 -0.31 -1.72 16 32 H 0.27 7.33 8.31 -40.81 -0.34 6.99 16 33 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 35 H 0.18 2.35 7.17 -52.49 -0.38 1.98 16 36 H 0.19 2.59 8.06 -52.49 -0.42 2.17 16 37 H 0.06 0.64 7.99 -51.93 -0.42 0.22 16 38 H 0.09 0.87 6.76 -51.93 -0.35 0.52 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.45 7.69 -51.92 -0.40 0.05 16 43 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 44 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 46 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 47 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 48 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 49 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -31.95 399.79 -13.22 -45.16 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.92 Total: 2.94 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -7.21 Total: -6.60 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.10 Total: -64.21 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.95 -13.22 -45.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.333 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds