Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00204 * 2 1 4 4 H 1.48503 * 109.47437 * 239.99986 * 3 2 1 5 5 H 1.48501 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47220 * 119.99905 * 3 2 1 7 7 C 1.37879 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99418 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46805 * 180.02562 * 9 7 2 11 11 N 1.40069 * 125.87126 * 270.70824 * 10 9 7 12 12 C 1.30252 * 109.69591 * 179.97438 * 11 10 9 13 13 C 1.41165 * 108.46731 * 359.54448 * 12 11 10 14 14 C 1.36313 * 125.87353 * 89.99905 * 10 9 7 15 15 N 1.33197 * 134.62035 * 359.97438 * 14 10 9 16 16 C 1.31506 * 120.68365 * 180.02562 * 15 14 10 17 17 N 1.32119 * 122.64923 * 359.97438 * 16 15 14 18 18 C 1.32868 * 121.19341 * 0.02562 * 17 16 15 19 19 N 1.38101 * 120.81254 * 179.97438 * 18 17 16 20 20 C 1.48532 * 111.00131 * 242.60411 * 19 18 17 21 21 C 1.54936 * 103.22831 * 159.72439 * 20 19 18 22 22 C 1.54594 * 102.91924 * 322.58232 * 21 20 19 23 23 C 1.47896 * 111.00211 * 0.02562 * 19 18 17 24 24 H 1.09006 * 110.08167 * 333.59825 * 23 19 18 25 25 C 1.52996 * 109.91912 * 94.80226 * 23 19 18 26 26 C 1.50702 * 109.47203 * 294.04441 * 25 23 19 27 27 C 1.38234 * 119.99895 * 269.72772 * 26 25 23 28 28 C 1.38240 * 120.00061 * 180.34228 * 27 26 25 29 29 C 1.38234 * 119.99689 * 359.90912 * 28 27 26 30 30 C 1.38235 * 120.00205 * 0.04302 * 29 28 27 31 31 C 1.38230 * 119.99899 * 0.02562 * 30 29 28 32 32 H 0.97014 * 120.00030 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47670 * 60.00562 * 9 7 2 34 34 H 1.08998 * 109.47653 * 299.99625 * 9 7 2 35 35 H 1.07997 * 125.77018 * 179.52452 * 12 11 10 36 36 H 1.07999 * 118.67185 * 179.97438 * 16 15 14 37 37 H 1.08996 * 110.67209 * 41.28183 * 20 19 18 38 38 H 1.09004 * 110.66381 * 278.15511 * 20 19 18 39 39 H 1.09006 * 110.72326 * 204.22416 * 21 20 19 40 40 H 1.09000 * 110.88109 * 81.01738 * 21 20 19 41 41 H 1.09000 * 110.31312 * 263.04050 * 22 21 20 42 42 H 1.09009 * 110.39071 * 140.91806 * 22 21 20 43 43 H 1.09003 * 109.47252 * 174.04619 * 25 23 19 44 44 H 1.09001 * 109.47630 * 54.04673 * 25 23 19 45 45 H 1.08001 * 120.00279 * 0.27436 * 27 26 25 46 46 H 1.07997 * 119.99852 * 179.97438 * 28 27 26 47 47 H 1.07999 * 119.99751 * 180.02562 * 29 28 27 48 48 H 1.08001 * 119.99730 * 180.02562 * 30 29 28 49 49 H 1.08000 * 120.00376 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 7 2.7469 -4.2273 -1.1355 12 6 3.5568 -5.1807 -0.7726 13 6 3.5886 -5.2278 0.6379 14 6 2.7220 -4.2198 1.1040 15 7 2.5794 -4.0523 2.4177 16 6 3.2325 -4.8156 3.2663 17 7 4.0524 -5.7755 2.8765 18 6 4.2614 -6.0206 1.5875 19 7 5.1205 -7.0256 1.1888 20 6 6.2675 -6.4731 0.4238 21 6 7.3347 -7.5915 0.5276 22 6 7.1434 -8.1191 1.9681 23 6 5.7093 -7.7144 2.3577 24 1 5.7333 -7.0421 3.2153 25 6 4.8891 -8.9609 2.6958 26 6 3.5156 -8.5482 3.1587 27 6 3.2788 -8.3177 4.5009 28 6 2.0172 -7.9460 4.9265 29 6 0.9928 -7.8030 4.0094 30 6 1.2297 -8.0325 2.6670 31 6 2.4910 -8.4056 2.2417 32 1 -0.4851 0.8402 0.0004 33 1 0.6240 -2.5567 -0.8903 34 1 0.6246 -2.5571 0.8897 35 1 4.1102 -5.8264 -1.4384 36 1 3.0929 -4.6512 4.3246 37 1 6.6287 -5.5529 0.8828 38 1 5.9895 -6.3020 -0.6163 39 1 8.3364 -7.1822 0.3965 40 1 7.1434 -8.3798 -0.2006 41 1 7.8641 -7.6535 2.6404 42 1 7.2500 -9.2037 1.9926 43 1 5.3869 -9.5195 3.4884 44 1 4.8002 -9.5890 1.8094 45 1 4.0793 -8.4291 5.2174 46 1 1.8322 -7.7663 5.9752 47 1 0.0072 -7.5121 4.3418 48 1 0.4294 -7.9203 1.9505 49 1 2.6761 -8.5853 1.1930 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065519975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = 140.197148 kcal Electronic energy + Delta-G solvation = -33487.772752 eV Core-core repulsion = 29415.924856 eV Total energy + Delta-G solvation = -4071.847897 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.02917 -41.06779 -39.65741 -39.21712 -35.89027 -34.94091 -34.09276 -33.26682 -32.45568 -31.63068 -30.34395 -30.21940 -29.13390 -26.52879 -25.57824 -25.11882 -24.13113 -23.37032 -22.67553 -21.87786 -21.60847 -20.96509 -19.12769 -18.77752 -18.47271 -17.85143 -17.55929 -16.81514 -16.71221 -16.24762 -16.06901 -15.82289 -15.74268 -15.38691 -15.15243 -15.00619 -14.69594 -14.28430 -14.16948 -14.00908 -13.88777 -13.74005 -13.65085 -13.36250 -13.07944 -12.83101 -12.77474 -12.64501 -12.48195 -12.36747 -12.34520 -12.10392 -12.01693 -11.76037 -11.70738 -11.61351 -11.39156 -11.30366 -10.78617 -10.49928 -10.10034 -9.78231 -9.66921 -9.54493 -9.14846 -8.38030 -6.55551 -0.24071 0.38929 0.62231 0.65667 1.29823 1.35335 1.35687 1.45932 1.56684 2.29199 2.43117 2.91256 2.91702 3.02072 3.17863 3.29196 3.53821 3.66524 3.82202 3.96111 4.04581 4.07902 4.11274 4.15509 4.23964 4.33814 4.36367 4.39134 4.57022 4.61081 4.68306 4.76386 4.80086 4.82065 4.89069 4.91414 4.95180 5.07837 5.09449 5.21159 5.23553 5.31130 5.32465 5.42100 5.43662 5.48700 5.58524 5.70350 5.74400 5.75080 5.83801 5.89762 6.03783 6.26081 6.28918 6.50264 6.64178 7.13908 7.32708 8.69602 Molecular weight = 363.18amu Principal moments of inertia in cm(-1) A = 0.011664 B = 0.003368 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.961398 B = 8312.465729 C = 9584.905567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.287 3.713 10 N -0.366 5.366 11 N -0.281 5.281 12 C 0.099 3.901 13 C -0.302 4.302 14 C 0.328 3.672 15 N -0.581 5.581 16 C 0.358 3.642 17 N -0.565 5.565 18 C 0.448 3.552 19 N -0.448 5.448 20 C 0.039 3.961 21 C -0.112 4.112 22 C -0.122 4.122 23 C 0.068 3.932 24 H 0.082 0.918 25 C -0.059 4.059 26 C -0.061 4.061 27 C -0.102 4.102 28 C -0.121 4.121 29 C -0.140 4.140 30 C -0.145 4.145 31 C -0.119 4.119 32 H 0.274 0.726 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.231 0.769 36 H 0.215 0.785 37 H 0.043 0.957 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.115 0.885 48 H 0.095 0.905 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.144 -22.168 7.490 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.064 0.936 9 C 0.168 3.832 10 N -0.153 5.153 11 N -0.096 5.096 12 C -0.096 4.096 13 C -0.318 4.318 14 C 0.081 3.919 15 N -0.305 5.305 16 C 0.065 3.935 17 N -0.289 5.289 18 C 0.198 3.802 19 N -0.166 5.166 20 C -0.086 4.086 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.039 4.039 24 H 0.100 0.900 25 C -0.097 4.097 26 C -0.061 4.061 27 C -0.120 4.120 28 C -0.139 4.139 29 C -0.159 4.159 30 C -0.163 4.163 31 C -0.138 4.138 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.247 0.753 36 H 0.231 0.769 37 H 0.062 0.938 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.157 0.843 46 H 0.154 0.846 47 H 0.133 0.867 48 H 0.113 0.887 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.834 -21.431 7.019 26.993 hybrid contribution -0.207 1.447 -0.005 1.462 sum 14.627 -19.984 7.014 25.739 Atomic orbital electron populations 1.70011 1.07450 1.29001 1.49293 1.25804 0.95891 1.02883 0.93470 0.85360 0.78351 0.77471 0.79008 1.19238 1.19314 1.19626 1.21341 0.92856 0.91105 1.53817 0.93553 1.19088 0.85910 0.80953 0.97245 1.49095 1.37015 1.28886 1.00340 1.76907 1.13279 1.10172 1.09200 1.24240 0.96733 0.95647 0.93015 1.19817 1.10082 1.05741 0.96114 1.19368 0.92405 0.91473 0.88690 1.67488 1.30239 1.32340 1.00433 1.24956 0.84890 0.83966 0.99652 1.68442 1.23175 1.21892 1.15408 1.19625 0.89367 0.84372 0.86878 1.61422 1.15270 1.18824 1.21106 1.23487 0.88425 0.97676 0.99017 1.22517 0.97964 0.97016 0.97523 1.22528 0.93502 1.03281 0.96687 1.22625 0.93821 0.95572 0.91872 0.89981 1.20674 0.90720 0.96114 1.02158 1.19892 0.95445 0.97602 0.93201 1.21147 0.96812 0.98642 0.95368 1.21281 0.93205 0.99562 0.99837 1.21175 0.99898 1.01394 0.93385 1.21127 0.97445 1.01399 0.96311 1.20975 0.92977 1.00666 0.99148 0.91663 0.95247 0.95248 0.75262 0.76853 0.93846 0.88301 0.88819 0.89056 0.90169 0.88415 0.87990 0.90278 0.84260 0.84625 0.86722 0.88657 0.87531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.16 13.28 21.45 0.28 -54.87 16 2 C 0.02 1.18 5.46 84.66 0.46 1.64 16 3 Si 0.98 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.55 -33.23 9.39 25.60 0.24 -32.99 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.29 16.59 6.19 85.63 0.53 17.12 16 10 N -0.37 -18.64 3.63 -348.94 -1.27 -19.91 16 11 N -0.28 -12.56 12.45 -56.46 -0.70 -13.26 16 12 C 0.10 3.40 11.33 85.65 0.97 4.38 16 13 C -0.30 -10.98 5.80 -21.28 -0.12 -11.11 16 14 C 0.33 15.03 8.04 134.15 1.08 16.10 16 15 N -0.58 -25.46 10.47 -198.10 -2.07 -27.54 16 16 C 0.36 12.07 12.24 180.87 2.21 14.28 16 17 N -0.57 -16.45 6.45 -197.02 -1.27 -17.72 16 18 C 0.45 13.01 4.39 133.64 0.59 13.60 16 19 N -0.45 -9.27 4.70 -664.48 -3.13 -12.40 16 20 C 0.04 0.65 5.92 86.65 0.51 1.17 16 21 C -0.11 -1.07 7.06 31.80 0.22 -0.84 16 22 C -0.12 -1.14 6.57 31.48 0.21 -0.93 16 23 C 0.07 1.08 2.44 45.07 0.11 1.19 16 24 H 0.08 1.61 6.55 -2.38 -0.02 1.59 16 25 C -0.06 -0.87 4.81 29.85 0.14 -0.73 16 26 C -0.06 -1.29 3.34 -19.87 -0.07 -1.35 16 27 C -0.10 -2.00 9.36 22.27 0.21 -1.79 16 28 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 29 C -0.14 -3.66 10.05 22.27 0.22 -3.43 16 30 C -0.14 -4.19 10.05 22.27 0.22 -3.96 16 31 C -0.12 -3.14 7.94 22.27 0.18 -2.96 16 32 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 33 H 0.03 1.78 8.14 -2.39 -0.02 1.77 16 34 H 0.03 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.23 5.35 7.17 -2.91 -0.02 5.33 16 36 H 0.22 5.72 8.06 -2.91 -0.02 5.70 16 37 H 0.04 0.87 7.99 -2.39 -0.02 0.85 16 38 H 0.10 1.54 6.76 -2.38 -0.02 1.52 16 39 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.58 7.69 -2.38 -0.02 0.56 16 43 H 0.10 1.01 8.08 -2.39 -0.02 0.99 16 44 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 45 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 47 H 0.11 2.81 8.06 -2.91 -0.02 2.79 16 48 H 0.10 2.91 8.06 -2.91 -0.02 2.88 16 49 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -75.14 399.79 2.98 -72.16 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.96 Total: 19.33 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 8.15 Total: 7.00 kcal Atomic # 7 Polarization: -137.55 SS G_CDS: -8.15 Total: -145.70 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.14 2.98 -72.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.354 kcal (2) G-P(sol) polarization free energy of solvation -75.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds