Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 C 1.53003 * 109.46949 * 240.00365 * 2 1 3 5 5 O 1.45195 * 109.47287 * 120.00434 * 2 1 3 6 6 C 1.34632 * 117.00185 * 59.99681 * 5 2 1 7 7 O 1.21520 * 119.99881 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00331 * 180.02562 * 6 5 2 9 9 C 1.46926 * 120.63018 * 180.02562 * 8 6 5 10 10 C 1.53194 * 108.77315 * 233.58498 * 9 8 6 11 11 C 1.53039 * 109.31221 * 305.36856 * 10 9 8 12 12 N 1.46507 * 109.46026 * 181.38638 * 11 10 9 13 13 C 1.35588 * 125.67862 * 305.07624 * 12 11 10 14 14 C 1.35479 * 108.87783 * 180.02562 * 13 12 11 15 15 C 1.39809 * 107.88175 * 359.77279 * 14 13 12 16 16 C 1.37666 * 125.68077 * 125.09511 * 12 11 10 17 17 C 1.46546 * 126.24717 * 359.94817 * 16 12 11 18 18 O 1.21746 * 119.99600 * 5.51980 * 17 16 12 19 19 N 1.34771 * 120.00248 * 185.51550 * 17 16 12 20 20 C 1.36874 * 119.99792 * 174.89246 * 19 17 16 21 21 H 1.08002 * 120.00298 * 0.27855 * 20 19 17 22 22 C 1.39020 * 120.00206 * 180.28111 * 20 19 17 23 23 N 1.31393 * 119.99367 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00165 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47618 * 59.99653 * 24 22 20 26 26 H 1.48503 * 109.47019 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46933 * 299.99153 * 24 22 20 28 28 C 1.53036 * 109.53175 * 61.36891 * 11 10 9 29 29 C 1.46924 * 120.62835 * 359.97438 * 8 6 5 30 30 H 1.09003 * 109.46908 * 299.99742 * 1 2 3 31 31 H 1.09004 * 109.47298 * 59.99166 * 1 2 3 32 32 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47508 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47614 * 300.00615 * 3 2 1 35 35 H 1.09003 * 109.46948 * 60.00282 * 3 2 1 36 36 H 1.08997 * 109.47363 * 299.99837 * 4 2 1 37 37 H 1.09004 * 109.46738 * 60.00126 * 4 2 1 38 38 H 1.09004 * 109.46943 * 179.97438 * 4 2 1 39 39 H 1.08996 * 109.58481 * 113.79922 * 9 8 6 40 40 H 1.09001 * 109.58706 * 353.37301 * 9 8 6 41 41 H 1.08997 * 109.49971 * 185.41681 * 10 9 8 42 42 H 1.09002 * 109.52473 * 65.33059 * 10 9 8 43 43 H 1.09002 * 109.45975 * 301.35690 * 11 10 9 44 44 H 1.07999 * 125.56170 * 359.97438 * 13 12 11 45 45 H 1.08003 * 126.05798 * 180.02562 * 14 13 12 46 46 H 1.08001 * 126.45728 * 180.22484 * 15 14 13 47 47 H 0.96992 * 120.00299 * 355.17420 * 19 17 16 48 48 H 0.97001 * 119.99962 * 180.02562 * 23 22 20 49 49 H 1.09010 * 109.49382 * 58.57802 * 28 11 10 50 50 H 1.08993 * 109.49975 * 178.67322 * 28 11 10 51 51 H 1.09001 * 109.58991 * 246.20197 * 29 8 6 52 52 H 1.09005 * 109.58658 * 6.48521 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6812 -4.0717 2.5972 10 6 1.0402 -4.2337 3.9791 11 6 1.9992 -3.7033 5.0473 12 7 1.4033 -3.8870 6.3730 13 6 0.1864 -3.4333 6.7627 14 6 -0.0227 -3.7920 8.0523 15 6 1.1006 -4.5011 8.4882 16 6 1.9856 -4.5487 7.4304 17 6 3.3025 -5.1915 7.4310 18 8 4.0328 -5.0837 6.4629 19 7 3.7052 -5.9018 8.5032 20 6 4.8887 -6.5883 8.4641 21 1 5.5020 -6.5572 7.5756 22 6 5.3013 -7.3258 9.5679 23 7 4.5554 -7.3634 10.6489 24 14 6.9168 -8.2622 9.5147 25 1 8.0330 -7.3109 9.2813 26 1 7.1259 -8.9622 10.8076 27 1 6.8760 -9.2575 8.4133 28 6 2.2597 -2.2145 4.8072 29 6 2.9152 -2.0298 3.4345 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8898 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2072 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 2.5655 -4.7051 2.5280 40 1 0.9646 -4.3555 1.8264 41 1 0.8366 -5.2883 4.1644 42 1 0.1073 -3.6711 4.0162 43 1 2.9408 -4.2499 4.9935 44 1 -0.5032 -2.8761 6.1460 45 1 -0.9030 -3.5728 8.6384 46 1 1.2487 -4.9291 9.4687 47 1 3.1545 -5.9299 9.3011 48 1 4.8434 -7.8777 11.4193 49 1 1.3153 -1.6707 4.8360 50 1 2.9241 -1.8318 5.5818 51 1 3.9000 -2.4971 3.4335 52 1 3.0150 -0.9667 3.2148 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065536271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = -71.382550 kcal Electronic energy + Delta-G solvation = -33652.281442 eV Core-core repulsion = 29231.657090 eV Total energy + Delta-G solvation = -4420.624352 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.25134 -40.79522 -38.62939 -37.66773 -36.68910 -34.53401 -34.10386 -33.38517 -31.38171 -31.33212 -29.73309 -28.69899 -27.70912 -27.65878 -25.24035 -25.02176 -23.70907 -22.49543 -21.60606 -21.00124 -19.88550 -19.16940 -18.74226 -18.29341 -17.69497 -16.94633 -16.78030 -16.37070 -15.50642 -15.18471 -14.82324 -14.80170 -14.69869 -14.43218 -14.25757 -14.04448 -13.83266 -13.74880 -13.49871 -13.23983 -12.96667 -12.92065 -12.73272 -12.46384 -12.33537 -12.18705 -12.14753 -12.05357 -11.79931 -11.78172 -11.65397 -11.61576 -11.55258 -11.45589 -11.13909 -10.84382 -10.65748 -10.61639 -10.48456 -10.30983 -10.17354 -9.62624 -8.98370 -8.50684 -8.25631 -8.10646 -7.62104 -6.54006 -3.89929 1.92368 2.22015 2.64167 3.15249 3.16587 3.21093 3.26566 3.31257 3.57395 4.09790 4.32190 4.41876 4.46513 4.50119 4.60669 4.69171 4.80720 4.83597 5.04473 5.09731 5.16093 5.16764 5.23554 5.25986 5.28536 5.37028 5.38610 5.46489 5.49780 5.56282 5.57993 5.64542 5.67929 5.69504 5.76254 5.84230 5.90505 5.95435 6.00085 6.03314 6.12579 6.23849 6.24589 6.30084 6.61204 6.78552 7.16266 7.32793 7.43546 7.58487 7.75415 7.96967 8.14401 8.50552 9.04806 9.42661 9.94601 10.62790 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.002147 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.197894 B =13036.163621 C =14047.810757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.655 3.345 7 O -0.572 6.572 8 N -0.594 5.594 9 C 0.132 3.868 10 C -0.140 4.140 11 C 0.117 3.883 12 N -0.408 5.408 13 C -0.015 4.015 14 C -0.204 4.204 15 C -0.173 4.173 16 C 0.000 4.000 17 C 0.495 3.505 18 O -0.608 6.608 19 N -0.533 5.533 20 C -0.298 4.298 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.889 5.889 24 Si 0.935 3.065 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 C -0.138 4.138 29 C 0.116 3.884 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.153 0.847 45 H 0.132 0.868 46 H 0.139 0.861 47 H 0.397 0.603 48 H 0.276 0.724 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 14.281 -16.520 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.410 3.590 7 O -0.462 6.462 8 N -0.335 5.335 9 C 0.010 3.990 10 C -0.179 4.179 11 C 0.015 3.985 12 N -0.082 5.082 13 C -0.148 4.148 14 C -0.229 4.229 15 C -0.199 4.199 16 C -0.114 4.114 17 C 0.283 3.717 18 O -0.498 6.498 19 N -0.166 5.166 20 C -0.428 4.428 21 H 0.124 0.876 22 C -0.178 4.178 23 N -0.529 5.529 24 Si 0.761 3.239 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.176 4.176 29 C -0.007 4.007 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.158 0.842 44 H 0.171 0.829 45 H 0.150 0.850 46 H 0.157 0.843 47 H 0.232 0.768 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.105 0.895 51 H 0.098 0.902 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.944 14.162 -17.590 23.939 hybrid contribution 0.233 -0.406 0.706 0.847 sum -7.711 13.756 -16.885 23.104 Atomic orbital electron populations 1.22510 0.94026 1.05051 1.02405 1.22067 0.94353 0.91537 0.82206 1.21858 1.02306 0.92528 1.03093 1.22513 1.01588 1.03510 0.96409 1.86298 1.71496 1.23626 1.46268 1.17933 0.78577 0.80488 0.81972 1.90879 1.41590 1.70454 1.43228 1.47046 1.52901 1.12259 1.21274 1.21627 1.01093 0.79038 0.97202 1.22297 0.98852 1.03038 0.93697 1.21861 0.99873 0.97287 0.79450 1.43942 1.13701 1.40751 1.09786 1.21626 0.89222 1.06892 0.97086 1.20661 1.00321 1.06791 0.95147 1.21327 0.94684 1.05441 0.98491 1.20612 0.97205 1.05190 0.88430 1.16569 0.85140 0.84711 0.85262 1.90513 1.56435 1.67202 1.35618 1.41578 1.20435 1.41057 1.13567 1.19706 0.97473 1.24074 1.01568 0.87572 1.25369 0.99783 0.97866 0.94828 1.69605 1.38178 1.40885 1.04184 0.85850 0.81064 0.79404 0.77542 1.19710 1.20803 1.19714 1.22254 1.02145 0.95890 0.97346 1.21735 0.93657 0.99251 0.86019 0.92207 0.91220 0.89388 0.91427 0.90185 0.91460 0.89365 0.91226 0.92162 0.90158 0.88040 0.89407 0.91079 0.84181 0.82929 0.85034 0.84327 0.76825 0.91418 0.91279 0.89501 0.90183 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 8.37 37.16 0.31 -1.31 16 2 C 0.14 1.23 1.13 -90.62 -0.10 1.13 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.60 16 4 C -0.18 -1.63 8.37 37.16 0.31 -1.32 16 5 O -0.36 -4.10 8.52 -40.30 -0.34 -4.45 16 6 C 0.66 8.30 7.74 54.06 0.42 8.72 16 7 O -0.57 -8.12 11.29 -19.29 -0.22 -8.33 16 8 N -0.59 -7.03 2.97 -178.53 -0.53 -7.56 16 9 C 0.13 1.52 6.43 -3.71 -0.02 1.50 16 10 C -0.14 -1.73 5.31 -26.61 -0.14 -1.87 16 11 C 0.12 1.74 2.68 -67.89 -0.18 1.56 16 12 N -0.41 -6.92 2.64 -105.75 -0.28 -7.20 16 13 C -0.02 -0.23 10.38 -16.88 -0.18 -0.40 16 14 C -0.20 -3.21 10.81 -39.98 -0.43 -3.65 16 15 C -0.17 -3.21 10.36 -39.08 -0.40 -3.61 16 16 C 0.00 0.00 6.88 -81.99 -0.56 -0.56 16 17 C 0.50 12.00 7.72 -12.91 -0.10 11.90 16 18 O -0.61 -15.79 13.97 5.15 0.07 -15.72 16 19 N -0.53 -13.62 5.26 -12.21 -0.06 -13.68 16 20 C -0.30 -8.12 9.67 -15.01 -0.15 -8.26 16 21 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.03 0.65 5.50 -17.45 -0.10 0.56 16 23 N -0.89 -23.59 13.05 55.50 0.72 -22.87 16 24 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 C -0.14 -1.71 5.46 -26.59 -0.15 -1.85 16 29 C 0.12 1.29 6.45 -3.69 -0.02 1.26 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.99 5.88 -51.93 -0.31 0.68 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.99 5.88 -51.93 -0.31 0.69 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.16 7.00 -51.93 -0.36 0.80 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 43 H 0.14 2.54 5.39 -51.93 -0.28 2.26 16 44 H 0.15 1.81 7.93 -52.49 -0.42 1.39 16 45 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 46 H 0.14 2.48 7.45 -52.49 -0.39 2.09 16 47 H 0.40 9.83 6.79 -40.82 -0.28 9.56 16 48 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.07 0.81 8.05 -51.92 -0.42 0.39 16 50 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 51 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.10 0.96 6.93 -51.93 -0.36 0.60 16 LS Contribution 412.87 15.07 6.22 6.22 Total: -1.00 -30.87 412.87 -8.71 -39.59 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -8.10 Total: 15.46 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.17 Total: 3.20 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.15 Total: -51.31 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.49 Total: -28.50 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -30.87 -8.71 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065536271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.797 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds