Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47263 * 2 1 4 4 C 1.53003 * 109.46949 * 240.00365 * 2 1 3 5 5 O 1.45195 * 109.47287 * 120.00434 * 2 1 3 6 6 C 1.34632 * 117.00185 * 59.99681 * 5 2 1 7 7 O 1.21520 * 119.99881 * 0.02562 * 6 5 2 8 8 N 1.34781 * 120.00331 * 180.02562 * 6 5 2 9 9 C 1.46926 * 120.63018 * 180.02562 * 8 6 5 10 10 C 1.53194 * 108.77315 * 233.58498 * 9 8 6 11 11 C 1.53039 * 109.31221 * 305.36856 * 10 9 8 12 12 N 1.46507 * 109.46026 * 181.38638 * 11 10 9 13 13 C 1.35588 * 125.67862 * 305.07624 * 12 11 10 14 14 C 1.35479 * 108.87783 * 180.02562 * 13 12 11 15 15 C 1.39809 * 107.88175 * 359.77279 * 14 13 12 16 16 C 1.37666 * 125.68077 * 125.09511 * 12 11 10 17 17 C 1.46546 * 126.24717 * 359.94817 * 16 12 11 18 18 O 1.21746 * 119.99600 * 5.51980 * 17 16 12 19 19 N 1.34771 * 120.00248 * 185.51550 * 17 16 12 20 20 C 1.36874 * 119.99792 * 174.89246 * 19 17 16 21 21 H 1.08002 * 120.00298 * 0.27855 * 20 19 17 22 22 C 1.39020 * 120.00206 * 180.28111 * 20 19 17 23 23 N 1.31393 * 119.99367 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00165 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47618 * 59.99653 * 24 22 20 26 26 H 1.48503 * 109.47019 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46933 * 299.99153 * 24 22 20 28 28 C 1.53036 * 109.53175 * 61.36891 * 11 10 9 29 29 C 1.46924 * 120.62835 * 359.97438 * 8 6 5 30 30 H 1.09003 * 109.46908 * 299.99742 * 1 2 3 31 31 H 1.09004 * 109.47298 * 59.99166 * 1 2 3 32 32 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47508 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47614 * 300.00615 * 3 2 1 35 35 H 1.09003 * 109.46948 * 60.00282 * 3 2 1 36 36 H 1.08997 * 109.47363 * 299.99837 * 4 2 1 37 37 H 1.09004 * 109.46738 * 60.00126 * 4 2 1 38 38 H 1.09004 * 109.46943 * 179.97438 * 4 2 1 39 39 H 1.08996 * 109.58481 * 113.79922 * 9 8 6 40 40 H 1.09001 * 109.58706 * 353.37301 * 9 8 6 41 41 H 1.08997 * 109.49971 * 185.41681 * 10 9 8 42 42 H 1.09002 * 109.52473 * 65.33059 * 10 9 8 43 43 H 1.09002 * 109.45975 * 301.35690 * 11 10 9 44 44 H 1.07999 * 125.56170 * 359.97438 * 13 12 11 45 45 H 1.08003 * 126.05798 * 180.02562 * 14 13 12 46 46 H 1.08001 * 126.45728 * 180.22484 * 15 14 13 47 47 H 0.96992 * 120.00299 * 355.17420 * 19 17 16 48 48 H 0.97001 * 119.99962 * 180.02562 * 23 22 20 49 49 H 1.09010 * 109.49382 * 58.57802 * 28 11 10 50 50 H 1.08993 * 109.49975 * 178.67322 * 28 11 10 51 51 H 1.09001 * 109.58991 * 246.20197 * 29 8 6 52 52 H 1.09005 * 109.58658 * 6.48521 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9515 -2.5097 0.5034 8 7 2.0673 -2.6655 2.4170 9 6 1.6812 -4.0717 2.5972 10 6 1.0402 -4.2337 3.9791 11 6 1.9992 -3.7033 5.0473 12 7 1.4033 -3.8870 6.3730 13 6 0.1864 -3.4333 6.7627 14 6 -0.0227 -3.7920 8.0523 15 6 1.1006 -4.5011 8.4882 16 6 1.9856 -4.5487 7.4304 17 6 3.3025 -5.1915 7.4310 18 8 4.0328 -5.0837 6.4629 19 7 3.7052 -5.9018 8.5032 20 6 4.8887 -6.5883 8.4641 21 1 5.5020 -6.5572 7.5756 22 6 5.3013 -7.3258 9.5679 23 7 4.5554 -7.3634 10.6489 24 14 6.9168 -8.2622 9.5147 25 1 8.0330 -7.3109 9.2813 26 1 7.1259 -8.9622 10.8076 27 1 6.8760 -9.2575 8.4133 28 6 2.2597 -2.2145 4.8072 29 6 2.9152 -2.0298 3.4345 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8898 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2494 37 1 1.6766 -0.2072 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 2.5655 -4.7051 2.5280 40 1 0.9646 -4.3555 1.8264 41 1 0.8366 -5.2883 4.1644 42 1 0.1073 -3.6711 4.0162 43 1 2.9408 -4.2499 4.9935 44 1 -0.5032 -2.8761 6.1460 45 1 -0.9030 -3.5728 8.6384 46 1 1.2487 -4.9291 9.4687 47 1 3.1545 -5.9299 9.3011 48 1 4.8434 -7.8777 11.4193 49 1 1.3153 -1.6707 4.8360 50 1 2.9241 -1.8318 5.5818 51 1 3.9000 -2.4971 3.4335 52 1 3.0150 -0.9667 3.2148 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065536271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -88.757863 kcal Electronic energy + Delta-G solvation = -33653.034892 eV Core-core repulsion = 29231.657090 eV Total energy + Delta-G solvation = -4421.377802 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.44560 -41.87087 -39.74702 -39.39216 -37.65698 -36.09063 -35.36572 -34.44964 -33.31961 -32.31639 -30.94413 -30.22223 -28.34118 -28.27519 -26.93383 -26.30404 -24.69216 -23.61535 -23.13415 -22.05974 -21.02429 -20.46143 -20.24057 -19.67464 -18.98410 -18.35033 -17.71477 -17.29211 -17.00662 -16.35909 -16.20242 -16.11464 -15.83519 -15.66276 -15.52409 -15.27343 -15.12658 -14.85563 -14.62224 -14.48334 -14.32898 -14.09304 -13.59721 -13.51918 -13.41407 -13.25234 -13.10513 -13.04737 -12.94091 -12.89457 -12.86615 -12.84887 -12.46793 -12.46609 -12.43948 -12.26121 -12.12711 -11.91738 -11.79327 -11.55989 -11.38336 -11.07653 -10.40021 -10.10072 -9.95362 -9.57928 -9.04956 -8.51938 -5.97685 0.69808 1.04915 1.41420 1.45788 1.52864 1.66261 1.88728 1.96668 2.29831 2.52833 2.72031 3.20402 3.28499 3.44506 3.63981 3.76880 3.81875 3.85096 3.95364 3.97051 4.09947 4.14551 4.20036 4.28227 4.44239 4.50569 4.52288 4.62536 4.63712 4.64288 4.66062 4.68223 4.70501 4.78865 4.82430 4.86613 4.89972 4.91441 5.05983 5.13070 5.29094 5.29904 5.30258 5.34420 5.37986 5.42638 5.45605 5.83791 6.05238 6.15509 6.22145 6.51126 6.54419 7.04212 7.20417 7.46878 8.00663 8.65375 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.002147 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.197894 B =13036.163621 C =14047.810757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.365 6.365 6 C 0.654 3.346 7 O -0.589 6.589 8 N -0.594 5.594 9 C 0.136 3.864 10 C -0.127 4.127 11 C 0.113 3.887 12 N -0.406 5.406 13 C 0.013 3.987 14 C -0.210 4.210 15 C -0.167 4.167 16 C -0.051 4.051 17 C 0.498 3.502 18 O -0.634 6.634 19 N -0.549 5.549 20 C -0.334 4.334 21 H 0.086 0.914 22 C -0.012 4.012 23 N -0.913 5.913 24 Si 0.999 3.001 25 H -0.270 1.270 26 H -0.269 1.269 27 H -0.269 1.269 28 C -0.126 4.126 29 C 0.123 3.877 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.196 0.804 45 H 0.165 0.835 46 H 0.135 0.865 47 H 0.397 0.603 48 H 0.281 0.719 49 H 0.086 0.914 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 16.264 -17.482 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.280 6.280 6 C 0.409 3.591 7 O -0.480 6.480 8 N -0.334 5.334 9 C 0.014 3.986 10 C -0.166 4.166 11 C 0.012 3.988 12 N -0.079 5.079 13 C -0.122 4.122 14 C -0.234 4.234 15 C -0.194 4.194 16 C -0.165 4.165 17 C 0.287 3.713 18 O -0.525 6.525 19 N -0.183 5.183 20 C -0.463 4.463 21 H 0.104 0.896 22 C -0.213 4.213 23 N -0.553 5.553 24 Si 0.822 3.178 25 H -0.195 1.195 26 H -0.194 1.194 27 H -0.194 1.194 28 C -0.165 4.165 29 C 0.000 4.000 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.213 0.787 45 H 0.182 0.818 46 H 0.153 0.847 47 H 0.232 0.768 48 H 0.091 0.909 49 H 0.105 0.895 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.506 16.156 -18.554 26.375 hybrid contribution 0.583 -0.901 0.897 1.399 sum -8.923 15.255 -17.657 24.982 Atomic orbital electron populations 1.22458 0.93802 1.03669 1.03590 1.22438 0.94718 0.92670 0.81445 1.21882 1.02370 0.90670 1.04352 1.22471 1.01519 1.02224 0.97452 1.86308 1.71498 1.22816 1.47379 1.18030 0.78349 0.80918 0.81773 1.90880 1.42388 1.70968 1.43805 1.47065 1.52828 1.12226 1.21318 1.21565 1.01040 0.79161 0.96809 1.22189 0.98750 1.02684 0.92938 1.21888 0.98945 0.98645 0.79344 1.44136 1.14203 1.39934 1.09669 1.22354 0.88109 1.04503 0.97195 1.21029 1.00376 1.06209 0.95780 1.21531 0.95259 1.04746 0.97885 1.20142 0.96553 1.08873 0.90914 1.17197 0.86330 0.83502 0.84233 1.90489 1.57818 1.67840 1.36349 1.41592 1.20437 1.42117 1.14127 1.19700 0.98613 1.26256 1.01751 0.89580 1.26184 1.02908 0.98101 0.94063 1.69674 1.39552 1.41448 1.04608 0.84901 0.76868 0.78045 0.78001 1.19459 1.19370 1.19418 1.22158 1.02779 0.93963 0.97590 1.21707 0.93068 1.00096 0.85153 0.91956 0.89111 0.91938 0.91360 0.87938 0.91181 0.91979 0.89045 0.92196 0.90519 0.87680 0.90131 0.89408 0.87951 0.78707 0.81797 0.84671 0.76809 0.90937 0.89518 0.90748 0.90819 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.37 71.98 0.60 -2.21 16 2 C 0.12 2.02 1.13 -10.79 -0.01 2.00 16 3 C -0.14 -1.41 8.85 71.98 0.64 -0.77 16 4 C -0.18 -2.95 8.37 71.98 0.60 -2.34 16 5 O -0.37 -7.71 8.52 -55.41 -0.47 -8.18 16 6 C 0.65 15.88 7.74 129.79 1.00 16.88 16 7 O -0.59 -16.42 11.29 19.78 0.22 -16.19 16 8 N -0.59 -13.48 2.97 -949.15 -2.82 -16.30 16 9 C 0.14 3.07 6.43 86.36 0.56 3.62 16 10 C -0.13 -2.98 5.31 30.67 0.16 -2.82 16 11 C 0.11 3.33 2.68 45.02 0.12 3.45 16 12 N -0.41 -13.41 2.64 -488.47 -1.29 -14.70 16 13 C 0.01 0.33 10.38 83.47 0.87 1.20 16 14 C -0.21 -5.99 10.81 22.01 0.24 -5.75 16 15 C -0.17 -6.12 10.36 22.59 0.23 -5.88 16 16 C -0.05 -2.12 6.88 40.34 0.28 -1.84 16 17 C 0.50 25.37 7.72 86.41 0.67 26.03 16 18 O -0.63 -34.88 13.97 -4.49 -0.06 -34.95 16 19 N -0.55 -29.54 5.26 -310.73 -1.64 -31.18 16 20 C -0.33 -19.06 9.67 84.09 0.81 -18.24 16 21 H 0.09 5.13 7.16 -2.91 -0.02 5.11 16 22 C -0.01 -0.62 5.50 84.95 0.47 -0.15 16 23 N -0.91 -49.48 13.05 21.68 0.28 -49.19 16 24 Si 1.00 42.44 29.55 68.60 2.03 44.46 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C -0.13 -2.97 5.46 30.68 0.17 -2.80 16 29 C 0.12 2.59 6.45 86.38 0.56 3.15 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.34 5.88 -2.39 -0.01 1.32 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 37 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.10 2.34 7.00 -2.39 -0.02 2.32 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.09 1.79 7.77 -2.39 -0.02 1.77 16 43 H 0.10 3.88 5.39 -2.39 -0.01 3.87 16 44 H 0.20 3.51 7.93 -2.91 -0.02 3.49 16 45 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 46 H 0.14 4.92 7.45 -2.91 -0.02 4.90 16 47 H 0.40 20.73 6.79 -92.71 -0.63 20.10 16 48 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 49 H 0.09 1.75 8.05 -2.38 -0.02 1.73 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.11 2.04 6.93 -2.38 -0.02 2.03 16 Total: -1.00 -70.18 412.87 4.52 -65.66 By element: Atomic # 1 Polarization: 46.73 SS G_CDS: 0.31 Total: 47.04 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 7.96 Total: 13.53 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -5.46 Total: -111.36 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -0.31 Total: -59.32 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -70.18 4.52 -65.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065536271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.100 kcal (2) G-P(sol) polarization free energy of solvation -70.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds