Wall clock time and date at job start Tue Mar 31 2020 06:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.46827 * 180.02562 * 8 6 5 10 10 C 1.34776 * 119.99683 * 180.02562 * 9 8 6 11 11 O 1.21596 * 120.00114 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00168 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00158 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.47396 * 275.00357 * 13 12 10 15 15 C 1.52990 * 109.47191 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47666 * 60.00022 * 15 14 13 17 17 C 1.53008 * 109.46798 * 300.00219 * 16 15 14 18 18 C 1.52991 * 109.46969 * 59.99809 * 17 16 15 19 19 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 20 20 C 1.46491 * 126.04623 * 179.87688 * 19 4 3 21 21 C 1.50702 * 109.46957 * 269.71277 * 20 19 4 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48504 * 109.47196 * 60.00645 * 25 23 21 27 27 H 1.48504 * 109.46887 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47679 * 300.00280 * 25 23 21 29 29 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 31 31 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 32 32 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 33 33 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 34 34 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 35 35 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 36 36 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 37 37 H 0.96994 * 120.00232 * 0.02562 * 9 8 6 38 38 H 0.97001 * 119.99923 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47209 * 35.00254 * 13 12 10 40 40 H 1.08999 * 109.46857 * 300.00112 * 14 13 12 41 41 H 1.09004 * 109.46929 * 59.99506 * 14 13 12 42 42 H 1.08999 * 109.47177 * 299.99751 * 15 14 13 43 43 H 1.09004 * 109.46937 * 180.02562 * 15 14 13 44 44 H 1.08999 * 109.47624 * 179.97438 * 16 15 14 45 45 H 1.08999 * 109.47043 * 59.99647 * 16 15 14 46 46 H 1.08999 * 109.46857 * 299.99543 * 17 16 15 47 47 H 1.09008 * 109.46569 * 179.97438 * 17 16 15 48 48 H 1.09010 * 109.46568 * 180.02562 * 18 17 16 49 49 H 1.08999 * 109.47548 * 60.00157 * 18 17 16 50 50 H 1.09004 * 109.47166 * 149.71543 * 20 19 4 51 51 H 1.08994 * 109.47507 * 29.71250 * 20 19 4 52 52 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 7 5.4271 5.1554 0.0305 10 6 6.3582 6.1298 0.0378 11 8 7.5395 5.8419 0.0404 12 7 5.9799 7.4234 0.0410 13 6 6.9920 8.4825 0.0494 14 6 7.4290 8.7590 1.4894 15 6 8.4855 9.8655 1.4982 16 6 7.8948 11.1396 0.8910 17 6 7.4577 10.8631 -0.5490 18 6 6.4012 9.7566 -0.5577 19 7 3.6093 -0.6405 0.0013 20 6 4.7870 -1.5116 0.0026 21 6 5.1921 -1.8109 -1.4178 22 1 4.6288 -1.3935 -2.2393 23 6 6.2856 -2.6124 -1.6685 24 7 6.9718 -3.1203 -0.6681 25 14 6.7923 -2.9770 -3.4290 26 1 7.1127 -1.7052 -4.1255 27 1 7.9891 -3.8562 -3.4277 28 1 5.6777 -3.6601 -4.1337 29 7 2.2731 -1.0608 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 1.9901 2.1596 -0.0009 34 1 5.6359 1.1294 0.0155 35 1 6.4297 3.5415 0.9182 36 1 6.4372 3.5481 -0.8617 37 1 4.4847 5.3851 0.0280 38 1 5.0375 7.6531 0.0384 39 1 7.8541 8.1659 -0.5375 40 1 6.5668 9.0756 2.0763 41 1 7.8494 7.8512 1.9221 42 1 9.3477 9.5493 0.9112 43 1 8.7971 10.0622 2.5240 44 1 8.6473 11.9281 0.8977 45 1 7.0325 11.4559 1.4780 46 1 8.3200 10.5469 -1.1360 47 1 7.0365 11.7708 -0.9814 48 1 6.0902 9.5594 -1.5837 49 1 5.5389 10.0729 0.0293 50 1 4.5494 -2.4431 0.5166 51 1 5.6079 -1.0120 0.5169 52 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065548741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:34 Heat of formation + Delta-G solvation = -8.593309 kcal Electronic energy + Delta-G solvation = -32002.200048 eV Core-core repulsion = 27616.591193 eV Total energy + Delta-G solvation = -4385.608855 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.206 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.02937 -40.44143 -39.36037 -38.38095 -34.97520 -34.54578 -34.38325 -33.80871 -32.11949 -31.16239 -30.15504 -29.24981 -28.64198 -26.97673 -26.06041 -23.16281 -23.00372 -22.73977 -21.58531 -20.91962 -20.34273 -19.85220 -19.56619 -18.51484 -17.20501 -16.84766 -16.55854 -16.29228 -16.13019 -15.53670 -15.26142 -15.06468 -14.70369 -14.63801 -14.53754 -14.34546 -14.13149 -14.09181 -13.41833 -13.23623 -13.05521 -12.88324 -12.80952 -12.66901 -12.57054 -12.55089 -12.06208 -11.83491 -11.65112 -11.60261 -11.55150 -11.11947 -11.07839 -10.88949 -10.85211 -10.62080 -10.50278 -10.36320 -10.34476 -10.06722 -9.85709 -9.62485 -9.49184 -9.07372 -8.73247 -7.98169 -7.52546 -6.34973 -4.43809 2.08196 2.22525 2.84375 2.99832 3.04996 3.18072 3.22884 3.26841 3.52609 3.70865 3.99880 4.23200 4.27722 4.35438 4.47126 4.55757 4.74632 4.85108 4.98422 5.04247 5.08702 5.09715 5.18809 5.22370 5.23545 5.31133 5.37431 5.56812 5.61568 5.66526 5.68960 5.71616 5.83735 5.95336 5.98368 6.02207 6.07580 6.09391 6.13681 6.22306 6.30251 6.33567 6.58614 6.70723 6.79497 6.99993 7.42181 7.50239 7.57672 7.75907 7.78449 7.81939 8.14455 8.40609 8.57212 8.66717 9.23986 10.72132 Molecular weight = 363.21amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.001903 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.401526 B =14713.266471 C =16570.246992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.293 4.293 4 C 0.299 3.701 5 N -0.633 5.633 6 C 0.517 3.483 7 O -0.516 6.516 8 C 0.126 3.874 9 N -0.734 5.734 10 C 0.708 3.292 11 O -0.589 6.589 12 N -0.742 5.742 13 C 0.164 3.836 14 C -0.131 4.131 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.116 4.116 18 C -0.127 4.127 19 N -0.342 5.342 20 C 0.256 3.744 21 C -0.542 4.542 22 H 0.064 0.936 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.907 3.093 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 N -0.283 5.283 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.420 0.580 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.408 0.592 38 H 0.396 0.604 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.045 0.955 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 26.489 3.480 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.325 4.325 4 C 0.077 3.923 5 N -0.280 5.280 6 C 0.302 3.698 7 O -0.391 6.391 8 C -0.003 4.003 9 N -0.393 5.393 10 C 0.408 3.592 11 O -0.467 6.467 12 N -0.397 5.397 13 C 0.059 3.941 14 C -0.170 4.170 15 C -0.156 4.156 16 C -0.160 4.160 17 C -0.154 4.154 18 C -0.165 4.165 19 N -0.127 5.127 20 C 0.138 3.862 21 C -0.581 4.581 22 H 0.083 0.917 23 C -0.137 4.137 24 N -0.526 5.526 25 Si 0.734 3.266 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.199 1.199 29 N -0.108 5.108 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.178 0.822 34 H 0.257 0.743 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.245 0.755 38 H 0.230 0.770 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.075 0.925 51 H 0.063 0.937 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.470 25.096 3.528 25.347 hybrid contribution 0.111 0.353 -0.922 0.993 sum -0.359 25.448 2.606 25.584 Atomic orbital electron populations 1.20019 0.87551 1.02472 1.02053 1.22039 0.96546 0.91027 1.01896 1.21250 0.89005 1.00419 1.21793 1.17893 0.87812 0.83413 1.03216 1.42593 1.08708 1.05304 1.71389 1.20424 0.91159 0.81862 0.76315 1.90624 1.26550 1.73589 1.48315 1.20789 0.93954 0.79921 1.05623 1.44702 1.10013 1.04166 1.80387 1.15787 0.84977 0.80685 0.77737 1.90951 1.15666 1.82306 1.57789 1.45165 1.10055 1.04052 1.80422 1.20843 0.91117 0.85449 0.96652 1.21959 0.99067 0.99234 0.96716 1.21497 0.98283 0.94662 1.01111 1.21581 1.00736 0.97610 0.96024 1.21480 0.98704 0.98018 0.97167 1.21820 0.98964 0.94366 1.01362 1.49383 1.06591 1.02128 1.54625 1.19648 0.77753 0.89793 0.98996 1.21283 1.13219 1.32314 0.91259 0.91745 1.24939 0.95664 0.94851 0.98221 1.69904 1.19019 1.32587 1.31120 0.86400 0.78091 0.78546 0.83593 1.19932 1.20877 1.19889 1.77377 0.86114 1.21789 1.25542 0.91359 0.91145 0.91471 0.82154 0.74265 0.87851 0.87697 0.75477 0.76991 0.89310 0.91927 0.91204 0.91650 0.91756 0.91880 0.91937 0.91564 0.91520 0.91216 0.91374 0.92490 0.93717 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.00 0.38 -0.52 16 2 C 0.05 0.97 7.21 -82.44 -0.59 0.38 16 3 C -0.29 -5.75 9.58 -39.78 -0.38 -6.13 16 4 C 0.30 6.08 7.66 -153.16 -1.17 4.90 16 5 N -0.63 -10.39 5.41 -11.46 -0.06 -10.45 16 6 C 0.52 7.37 7.86 -10.98 -0.09 7.29 16 7 O -0.52 -8.25 12.80 5.55 0.07 -8.18 16 8 C 0.13 1.45 6.15 -5.19 -0.03 1.41 16 9 N -0.73 -7.95 5.53 -66.41 -0.37 -8.32 16 10 C 0.71 8.38 8.53 -86.92 -0.74 7.63 16 11 O -0.59 -9.15 16.01 5.28 0.08 -9.06 16 12 N -0.74 -6.28 5.08 -58.67 -0.30 -6.57 16 13 C 0.16 1.30 2.46 -67.93 -0.17 1.14 16 14 C -0.13 -1.02 5.49 -26.73 -0.15 -1.16 16 15 C -0.12 -0.75 5.92 -26.74 -0.16 -0.91 16 16 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 17 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 18 C -0.13 -0.71 5.39 -26.74 -0.14 -0.85 16 19 N -0.34 -7.84 3.60 -61.58 -0.22 -8.06 16 20 C 0.26 6.29 6.01 -5.20 -0.03 6.25 16 21 C -0.54 -14.41 9.39 -34.44 -0.32 -14.73 16 22 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 25 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 29 N -0.28 -6.47 12.56 33.65 0.42 -6.04 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.16 3.00 5.83 -52.49 -0.31 2.70 16 34 H 0.42 6.39 7.96 -40.82 -0.32 6.06 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.41 4.01 7.45 -40.82 -0.30 3.70 16 38 H 0.40 2.38 8.62 -40.82 -0.35 2.03 16 39 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 48 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 51 H 0.05 1.06 7.49 -51.93 -0.39 0.67 16 52 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 425.86 15.07 6.42 6.42 Total: -1.00 -32.89 425.86 -10.63 -43.52 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -8.38 Total: 9.70 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -4.02 Total: 4.86 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.21 Total: -62.89 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.16 Total: -17.24 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -32.89 -10.63 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065548741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.925 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds