Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 N 1.46499 * 109.46827 * 180.02562 * 8 6 5 10 10 C 1.34776 * 119.99683 * 180.02562 * 9 8 6 11 11 O 1.21596 * 120.00114 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00168 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00158 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.47396 * 275.00357 * 13 12 10 15 15 C 1.52990 * 109.47191 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47666 * 60.00022 * 15 14 13 17 17 C 1.53008 * 109.46798 * 300.00219 * 16 15 14 18 18 C 1.52991 * 109.46969 * 59.99809 * 17 16 15 19 19 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 20 20 C 1.46491 * 126.04623 * 179.87688 * 19 4 3 21 21 C 1.50702 * 109.46957 * 269.71277 * 20 19 4 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48504 * 109.47196 * 60.00645 * 25 23 21 27 27 H 1.48504 * 109.46887 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47679 * 300.00280 * 25 23 21 29 29 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 31 31 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 32 32 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 33 33 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 34 34 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 35 35 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 36 36 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 37 37 H 0.96994 * 120.00232 * 0.02562 * 9 8 6 38 38 H 0.97001 * 119.99923 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.47209 * 35.00254 * 13 12 10 40 40 H 1.08999 * 109.46857 * 300.00112 * 14 13 12 41 41 H 1.09004 * 109.46929 * 59.99506 * 14 13 12 42 42 H 1.08999 * 109.47177 * 299.99751 * 15 14 13 43 43 H 1.09004 * 109.46937 * 180.02562 * 15 14 13 44 44 H 1.08999 * 109.47624 * 179.97438 * 16 15 14 45 45 H 1.08999 * 109.47043 * 59.99647 * 16 15 14 46 46 H 1.08999 * 109.46857 * 299.99543 * 17 16 15 47 47 H 1.09008 * 109.46569 * 179.97438 * 17 16 15 48 48 H 1.09010 * 109.46568 * 180.02562 * 18 17 16 49 49 H 1.08999 * 109.47548 * 60.00157 * 18 17 16 50 50 H 1.09004 * 109.47166 * 149.71543 * 20 19 4 51 51 H 1.08994 * 109.47507 * 29.71250 * 20 19 4 52 52 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 7 5.4271 5.1554 0.0305 10 6 6.3582 6.1298 0.0378 11 8 7.5395 5.8419 0.0404 12 7 5.9799 7.4234 0.0410 13 6 6.9920 8.4825 0.0494 14 6 7.4290 8.7590 1.4894 15 6 8.4855 9.8655 1.4982 16 6 7.8948 11.1396 0.8910 17 6 7.4577 10.8631 -0.5490 18 6 6.4012 9.7566 -0.5577 19 7 3.6093 -0.6405 0.0013 20 6 4.7870 -1.5116 0.0026 21 6 5.1921 -1.8109 -1.4178 22 1 4.6288 -1.3935 -2.2393 23 6 6.2856 -2.6124 -1.6685 24 7 6.9718 -3.1203 -0.6681 25 14 6.7923 -2.9770 -3.4290 26 1 7.1127 -1.7052 -4.1255 27 1 7.9891 -3.8562 -3.4277 28 1 5.6777 -3.6601 -4.1337 29 7 2.2731 -1.0608 0.0005 30 1 -0.3634 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5136 33 1 1.9901 2.1596 -0.0009 34 1 5.6359 1.1294 0.0155 35 1 6.4297 3.5415 0.9182 36 1 6.4372 3.5481 -0.8617 37 1 4.4847 5.3851 0.0280 38 1 5.0375 7.6531 0.0384 39 1 7.8541 8.1659 -0.5375 40 1 6.5668 9.0756 2.0763 41 1 7.8494 7.8512 1.9221 42 1 9.3477 9.5493 0.9112 43 1 8.7971 10.0622 2.5240 44 1 8.6473 11.9281 0.8977 45 1 7.0325 11.4559 1.4780 46 1 8.3200 10.5469 -1.1360 47 1 7.0365 11.7708 -0.9814 48 1 6.0902 9.5594 -1.5837 49 1 5.5389 10.0729 0.0293 50 1 4.5494 -2.4431 0.5166 51 1 5.6079 -1.0120 0.5169 52 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065548741.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -30.440767 kcal Electronic energy + Delta-G solvation = -32003.147425 eV Core-core repulsion = 27616.591193 eV Total energy + Delta-G solvation = -4386.556232 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.206 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.48577 -41.42364 -40.55666 -39.09102 -36.36509 -35.72790 -35.47364 -35.16747 -33.84917 -31.66322 -31.18699 -30.60080 -29.91668 -28.10675 -27.78594 -24.79293 -23.74999 -23.47872 -22.76901 -21.81068 -21.31346 -21.01534 -20.79426 -19.50543 -18.89572 -18.41095 -17.68850 -17.50460 -17.22631 -16.68162 -16.39009 -16.23564 -16.03178 -15.75066 -15.61016 -15.33547 -15.03806 -14.86178 -14.64217 -14.46240 -14.30023 -14.04962 -14.01819 -13.73081 -13.54630 -13.38716 -13.35124 -13.11899 -13.09315 -12.91177 -12.70892 -12.29258 -12.21758 -12.04187 -11.98020 -11.71461 -11.67569 -11.50830 -11.37355 -11.28056 -11.11705 -11.04806 -10.76559 -10.43171 -9.84567 -9.64710 -9.09214 -8.36986 -6.54202 0.70802 1.10358 1.36626 1.38164 1.46241 1.56057 1.70041 2.02536 2.09855 2.19889 2.34693 2.93746 3.20729 3.29727 3.74945 3.83600 3.85194 4.06057 4.21862 4.24599 4.25635 4.29348 4.34160 4.48451 4.58088 4.59743 4.60427 4.70488 4.73027 4.81745 4.85460 4.90917 4.91566 4.95706 5.09327 5.14650 5.19166 5.20982 5.22583 5.24530 5.27125 5.35814 5.41551 5.50283 5.51901 5.61512 5.76380 5.93551 5.95768 6.10018 6.21605 6.55036 6.80555 7.01172 7.02173 7.17703 7.51442 8.69117 Molecular weight = 363.21amu Principal moments of inertia in cm(-1) A = 0.010695 B = 0.001903 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.401526 B =14713.266471 C =16570.246992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.057 3.943 3 C -0.301 4.301 4 C 0.297 3.703 5 N -0.634 5.634 6 C 0.525 3.475 7 O -0.528 6.528 8 C 0.134 3.866 9 N -0.727 5.727 10 C 0.706 3.294 11 O -0.629 6.629 12 N -0.728 5.728 13 C 0.163 3.837 14 C -0.126 4.126 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.116 4.116 18 C -0.119 4.119 19 N -0.366 5.366 20 C 0.271 3.729 21 C -0.555 4.555 22 H 0.048 0.952 23 C 0.027 3.973 24 N -0.913 5.913 25 Si 0.967 3.033 26 H -0.266 1.266 27 H -0.273 1.273 28 H -0.277 1.277 29 N -0.331 5.331 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.173 0.827 34 H 0.424 0.576 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.415 0.585 38 H 0.411 0.589 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.027 0.973 51 H 0.050 0.950 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.010 28.877 2.862 29.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.333 4.333 4 C 0.075 3.925 5 N -0.282 5.282 6 C 0.312 3.688 7 O -0.403 6.403 8 C 0.006 3.994 9 N -0.387 5.387 10 C 0.405 3.595 11 O -0.510 6.510 12 N -0.383 5.383 13 C 0.058 3.942 14 C -0.165 4.165 15 C -0.155 4.155 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.157 4.157 19 N -0.151 5.151 20 C 0.152 3.848 21 C -0.594 4.594 22 H 0.067 0.933 23 C -0.175 4.175 24 N -0.551 5.551 25 Si 0.791 3.209 26 H -0.190 1.190 27 H -0.198 1.198 28 H -0.203 1.203 29 N -0.156 5.156 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.190 0.810 34 H 0.262 0.738 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.253 0.747 38 H 0.247 0.753 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.045 0.955 51 H 0.068 0.932 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.366 27.536 2.918 27.724 hybrid contribution 0.318 -0.308 -0.679 0.811 sum -1.048 27.228 2.238 27.340 Atomic orbital electron populations 1.20226 0.83904 1.03910 1.03870 1.22912 0.98756 0.90120 0.99020 1.21492 0.88762 1.00926 1.22096 1.18290 0.89389 0.82819 1.02023 1.42743 1.07975 1.05730 1.71729 1.20842 0.91792 0.81107 0.75021 1.90602 1.27450 1.73597 1.48694 1.20743 0.92430 0.79707 1.06539 1.44604 1.10211 1.03703 1.80152 1.15942 0.84400 0.81583 0.77535 1.90927 1.17381 1.83036 1.59678 1.45093 1.11088 1.02990 1.79134 1.20907 0.90467 0.86206 0.96614 1.21900 0.99695 0.98479 0.96457 1.21496 0.97610 0.94969 1.01424 1.21564 1.01193 0.96842 0.95975 1.21500 0.98377 0.98344 0.97145 1.21783 0.99453 0.92998 1.01489 1.49165 1.06314 1.02893 1.56765 1.19232 0.78674 0.89088 0.97774 1.21373 1.13473 1.32835 0.91680 0.93337 1.25678 0.95464 0.94400 1.01954 1.69981 1.19349 1.32873 1.32876 0.85465 0.77731 0.78670 0.78994 1.19032 1.19814 1.20285 1.77331 0.86406 1.23725 1.28127 0.89222 0.88648 0.91054 0.80962 0.73768 0.86646 0.87030 0.74677 0.75265 0.91857 0.90845 0.94074 0.92655 0.91324 0.91067 0.91115 0.92275 0.90013 0.90954 0.89826 0.95506 0.93235 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.61 10.44 71.23 0.74 -0.87 16 2 C 0.06 2.20 7.21 43.07 0.31 2.51 16 3 C -0.30 -11.59 9.58 22.14 0.21 -11.37 16 4 C 0.30 12.11 7.66 131.32 1.01 13.12 16 5 N -0.63 -20.69 5.41 -308.55 -1.67 -22.36 16 6 C 0.52 14.47 7.86 87.66 0.69 15.16 16 7 O -0.53 -16.13 12.80 -3.07 -0.04 -16.17 16 8 C 0.13 2.95 6.15 85.64 0.53 3.48 16 9 N -0.73 -14.90 5.53 -482.29 -2.67 -17.56 16 10 C 0.71 16.24 8.53 179.06 1.53 17.77 16 11 O -0.63 -19.68 16.01 -4.02 -0.06 -19.74 16 12 N -0.73 -11.51 5.08 -457.80 -2.33 -13.83 16 13 C 0.16 2.47 2.46 44.99 0.11 2.58 16 14 C -0.13 -1.90 5.49 30.59 0.17 -1.74 16 15 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 16 C -0.12 -0.99 5.92 30.60 0.18 -0.81 16 17 C -0.12 -0.95 5.92 30.59 0.18 -0.77 16 18 C -0.12 -1.09 5.39 30.59 0.16 -0.93 16 19 N -0.37 -17.20 3.60 -348.73 -1.26 -18.45 16 20 C 0.27 13.81 6.01 85.64 0.51 14.33 16 21 C -0.56 -30.16 9.39 25.60 0.24 -29.92 16 22 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 23 C 0.03 1.43 5.46 84.66 0.46 1.89 16 24 N -0.91 -50.09 13.29 21.45 0.28 -49.81 16 25 Si 0.97 42.28 29.54 68.60 2.03 44.30 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 29 N -0.33 -15.38 12.56 -47.45 -0.60 -15.97 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.17 6.17 5.83 -2.91 -0.02 6.15 16 34 H 0.42 12.99 7.96 -92.70 -0.74 12.25 16 35 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.41 7.45 7.45 -92.71 -0.69 6.76 16 38 H 0.41 4.11 8.62 -92.71 -0.80 3.31 16 39 H 0.06 1.31 7.58 -2.39 -0.02 1.29 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 48 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 51 H 0.05 2.42 7.49 -2.39 -0.02 2.41 16 52 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -72.07 425.86 -0.35 -72.43 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -1.26 Total: 33.97 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 7.22 Total: 23.21 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -8.23 Total: -138.00 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -0.10 Total: -35.91 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -72.07 -0.35 -72.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065548741.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.985 kcal (2) G-P(sol) polarization free energy of solvation -72.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds