Wall clock time and date at job start Tue Mar 31 2020 05:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 S 1.81405 * 109.47097 * 269.97637 * 14 13 12 16 16 C 1.76200 * 103.00291 * 179.97438 * 15 14 13 17 17 N 1.29646 * 125.41033 * 359.70053 * 16 15 14 18 18 N 1.37764 * 115.60530 * 179.79554 * 17 16 15 19 19 C 1.29578 * 115.62121 * 0.49962 * 18 17 16 20 20 N 1.38996 * 125.40169 * 179.76289 * 19 18 17 21 21 C 1.48530 * 111.00245 * 242.57592 * 20 19 18 22 22 C 1.54942 * 103.23080 * 159.71959 * 21 20 19 23 23 C 1.54596 * 102.91944 * 322.58915 * 22 21 20 24 24 C 1.47908 * 111.00333 * 359.97438 * 20 19 18 25 25 S 1.76033 * 109.19452 * 359.74013 * 19 18 17 26 26 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 27 27 C 1.38101 * 120.07230 * 0.04164 * 26 13 12 28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 31 31 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 32 32 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 33 33 H 1.08998 * 110.66869 * 278.16056 * 21 20 19 34 34 H 1.09001 * 110.66444 * 41.28522 * 21 20 19 35 35 H 1.09001 * 110.72329 * 204.22957 * 22 21 20 36 36 H 1.08993 * 110.87275 * 81.01711 * 22 21 20 37 37 H 1.09007 * 110.30758 * 263.04215 * 23 22 21 38 38 H 1.08994 * 110.30798 * 140.87319 * 23 22 21 39 39 H 1.09002 * 109.91222 * 333.51144 * 24 20 19 40 40 H 1.08998 * 109.91644 * 94.79783 * 24 20 19 41 41 H 1.07999 * 119.96698 * 180.02562 * 26 13 12 42 42 H 1.07992 * 120.03608 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 16 4.7048 -7.7524 1.2108 16 6 5.6533 -9.1990 0.8756 17 7 5.9931 -9.6180 -0.3033 18 7 6.7419 -10.7740 -0.3314 19 6 7.0027 -11.3008 0.8234 20 7 7.7344 -12.4642 1.0309 21 6 6.8987 -13.5115 1.6720 22 6 7.6592 -14.8213 1.3453 23 6 8.1758 -14.5721 -0.0904 24 6 8.1887 -13.0409 -0.2532 25 16 6.2838 -10.3091 2.0876 26 6 4.2024 -4.5970 -0.2043 27 6 3.4573 -3.4394 -0.0951 28 1 -0.4850 0.8400 0.0004 29 1 0.3579 -4.7892 -0.2301 30 1 1.6954 -6.8451 -0.4339 31 1 3.8358 -7.8156 -1.0337 32 1 5.3321 -6.8566 -0.9342 33 1 6.8462 -13.3556 2.7495 34 1 5.9001 -13.5274 1.2354 35 1 6.9832 -15.6760 1.3691 36 1 8.4908 -14.9697 2.0341 37 1 7.5024 -15.0244 -0.8185 38 1 9.1828 -14.9732 -0.2050 39 1 7.5093 -12.7468 -1.0532 40 1 9.1994 -12.6996 -0.4765 41 1 5.2812 -4.5470 -0.1947 42 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065563024.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:58 Heat of formation + Delta-G solvation = 70.478645 kcal Electronic energy + Delta-G solvation = -25173.213011 eV Core-core repulsion = 21372.579775 eV Total energy + Delta-G solvation = -3800.633236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46184 -39.18162 -38.72167 -36.84873 -33.46911 -32.58961 -31.29466 -30.38179 -30.30070 -29.52154 -26.39447 -25.44528 -25.01332 -23.07194 -22.11180 -21.97918 -20.85582 -20.35949 -19.41540 -18.12236 -17.58904 -17.13602 -16.78644 -16.23127 -15.50960 -15.01858 -14.81086 -14.66071 -14.55562 -14.28029 -13.86967 -13.73472 -13.71485 -13.62333 -13.26834 -13.08368 -12.88241 -12.82632 -12.26912 -12.03037 -11.85185 -11.74937 -11.55955 -11.42144 -11.19399 -11.12147 -11.02004 -10.95639 -10.74615 -10.52443 -10.48042 -10.31563 -9.82304 -9.46585 -9.22863 -8.92734 -8.33470 -7.88063 -7.31727 -6.56793 -4.14349 0.15284 0.33732 0.88469 1.13542 1.84034 1.87756 2.10730 2.54794 3.04157 3.07902 3.08755 3.13248 3.82627 3.87981 4.04322 4.31606 4.38115 4.46382 4.65956 4.79656 4.80024 4.97716 5.02316 5.05047 5.06175 5.17428 5.19414 5.25310 5.35294 5.45154 5.54135 5.58910 5.68960 5.73363 5.88318 6.08778 6.14373 6.27387 6.54224 6.75517 6.91688 7.09118 7.20668 7.30913 7.60261 7.65899 7.87879 8.88299 9.55414 10.60342 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.036289 B = 0.001500 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.407522 B =18659.742534 C =18776.105301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.095 0.905 9 O -0.169 6.169 10 C 0.163 3.837 11 C -0.193 4.193 12 C -0.049 4.049 13 C -0.192 4.192 14 C -0.032 4.032 15 S 0.010 5.990 16 C 0.029 3.971 17 N -0.282 5.282 18 N -0.319 5.319 19 C 0.217 3.783 20 N -0.429 5.429 21 C 0.036 3.964 22 C -0.121 4.121 23 C -0.131 4.131 24 C 0.037 3.963 25 S 0.100 5.900 26 C -0.045 4.045 27 C -0.235 4.235 28 H 0.272 0.728 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.111 0.889 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.055 -26.253 3.632 29.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.469 4.469 8 H 0.112 0.888 9 O -0.071 6.071 10 C 0.107 3.893 11 C -0.213 4.213 12 C -0.069 4.069 13 C -0.197 4.197 14 C -0.181 4.181 15 S 0.243 5.757 16 C -0.369 4.369 17 N -0.112 5.112 18 N -0.149 5.149 19 C -0.166 4.166 20 N -0.152 5.152 21 C -0.091 4.091 22 C -0.159 4.159 23 C -0.170 4.170 24 C -0.092 4.092 25 S 0.336 5.664 26 C -0.065 4.065 27 C -0.255 4.255 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 13.772 -25.508 4.551 29.344 hybrid contribution 0.487 0.236 -1.579 1.669 sum 14.259 -25.273 2.972 29.170 Atomic orbital electron populations 1.70033 1.06043 1.28003 1.44930 1.25340 0.95874 0.98997 0.96221 0.85679 0.78974 0.79783 0.78846 1.19743 1.20139 1.19055 1.21398 0.91961 0.80655 1.52904 0.88768 1.83973 1.34618 1.11621 1.76897 1.19454 0.90329 0.88029 0.91463 1.20193 0.99754 0.90130 1.11178 1.20519 0.92451 0.97119 0.96849 1.18527 0.93193 0.91742 1.16212 1.22398 1.03685 0.98562 0.93416 1.86376 1.58574 1.14782 1.15930 1.31012 1.04766 1.06082 0.94998 1.75527 1.11712 1.05729 1.18244 1.75244 1.14003 1.05513 1.20181 1.27401 0.97168 0.99922 0.92083 1.62003 1.29825 1.00976 1.22404 1.23542 0.95379 0.89582 1.00619 1.22505 1.00419 0.96090 0.96929 1.22461 1.02730 0.94597 0.97201 1.23049 1.02796 0.94040 0.89316 1.85573 1.52550 1.18048 1.10257 1.20636 0.98596 0.91477 0.95784 1.21145 0.93731 0.98944 1.11658 0.91784 0.86114 0.86660 0.88612 0.88645 0.88471 0.91875 0.89857 0.89912 0.90669 0.90118 0.90223 0.89047 0.87072 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.32 13.67 55.48 0.76 -23.57 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.39 -10.58 9.49 30.89 0.29 -10.29 16 8 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 9 O -0.17 -4.64 9.76 0.05 0.00 -4.64 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.19 -3.86 9.99 -39.39 -0.39 -4.26 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 13 C -0.19 -3.13 5.14 -104.58 -0.54 -3.66 16 14 C -0.03 -0.44 5.67 36.00 0.20 -0.24 16 15 S 0.01 0.14 22.15 -107.50 -2.38 -2.24 16 16 C 0.03 0.39 7.82 51.84 0.41 0.79 16 17 N -0.28 -4.23 11.62 31.11 0.36 -3.86 16 18 N -0.32 -4.49 10.47 30.85 0.32 -4.16 16 19 C 0.22 2.52 6.83 -87.39 -0.60 1.92 16 20 N -0.43 -3.86 5.37 -169.71 -0.91 -4.77 16 21 C 0.04 0.22 6.37 -1.90 -0.01 0.21 16 22 C -0.12 -0.51 7.06 -24.87 -0.18 -0.68 16 23 C -0.13 -0.63 6.93 -25.38 -0.18 -0.81 16 24 C 0.04 0.29 6.46 -2.75 -0.02 0.27 16 25 S 0.10 1.10 23.24 -107.50 -2.50 -1.40 16 26 C -0.04 -0.78 9.69 -39.61 -0.38 -1.16 16 27 C -0.24 -4.85 9.17 -39.39 -0.36 -5.22 16 28 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.10 1.26 8.08 -51.92 -0.42 0.84 16 32 H 0.10 1.28 8.08 -51.92 -0.42 0.86 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.42 8.00 -51.93 -0.42 0.01 16 35 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.75 6.81 -51.93 -0.35 0.40 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16 LS Contribution 382.74 15.07 5.77 5.77 Total: -1.00 -30.68 382.74 -11.21 -41.89 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.12 Total: 2.01 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.49 Total: -19.84 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.53 Total: -36.36 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.00 Total: -4.64 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -4.88 Total: -3.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.68 -11.21 -41.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065563024.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.367 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds