Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39733 * 125.77713 * 2 1 4 4 C 1.36146 * 107.86065 * 180.02562 * 3 2 1 5 5 N 1.39377 * 126.26430 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99953 * 359.97438 * 5 4 3 7 7 O 1.21567 * 120.00002 * 0.02562 * 6 5 4 8 8 C 1.47810 * 119.99831 * 179.97438 * 6 5 4 9 9 C 1.39590 * 120.14166 * 179.97438 * 8 6 5 10 10 C 1.37956 * 119.84775 * 179.74550 * 9 8 6 11 11 C 1.38362 * 120.14721 * 0.26440 * 10 9 8 12 12 S 1.76199 * 119.85501 * 179.97438 * 11 10 9 13 13 O 1.42094 * 104.27668 * 206.06906 * 12 11 10 14 14 O 1.42102 * 104.27221 * 333.92494 * 12 11 10 15 15 C 1.81402 * 104.44782 * 89.99344 * 12 11 10 16 16 C 1.53009 * 109.46956 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47023 * 180.02562 * 16 15 12 18 18 H 1.07997 * 119.99641 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99582 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99544 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00053 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47131 * 90.00621 * 21 19 17 23 23 H 1.48504 * 109.46942 * 210.00085 * 21 19 17 24 24 H 1.48496 * 109.47658 * 329.99995 * 21 19 17 25 25 C 1.38363 * 120.29611 * 359.97438 * 11 10 9 26 26 C 1.37956 * 120.14504 * 0.02562 * 25 11 10 27 27 N 1.35805 * 107.46828 * 0.26440 * 4 3 2 28 28 H 0.97010 * 126.09236 * 179.71361 * 27 4 3 29 29 N 1.30828 * 125.77901 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47115 * 89.99541 * 1 2 3 31 31 H 1.09000 * 109.47260 * 210.00033 * 1 2 3 32 32 H 1.09008 * 109.47329 * 330.00004 * 1 2 3 33 33 H 1.08000 * 126.07036 * 0.02562 * 3 2 1 34 34 H 0.96996 * 120.00135 * 180.02562 * 5 4 3 35 35 H 1.08002 * 120.08049 * 0.03239 * 9 8 6 36 36 H 1.07998 * 119.92638 * 180.22795 * 10 9 8 37 37 H 1.08996 * 109.47289 * 299.99908 * 15 12 11 38 38 H 1.08997 * 109.47081 * 60.00553 * 15 12 11 39 39 H 1.09001 * 109.46651 * 300.00375 * 16 15 12 40 40 H 1.09002 * 109.46903 * 59.99722 * 16 15 12 41 41 H 0.97001 * 119.99484 * 180.02562 * 20 19 17 42 42 H 1.08003 * 119.93145 * 180.02562 * 25 11 10 43 43 H 1.08001 * 120.07057 * 179.97438 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1337 0.0000 4 6 3.6194 0.7148 -0.0006 5 7 4.7495 1.5305 -0.0003 6 6 4.6129 2.8714 0.0002 7 8 3.5039 3.3693 0.0007 8 6 5.8114 3.7364 0.0011 9 6 5.6734 5.1254 0.0010 10 6 6.7961 5.9270 0.0071 11 6 8.0569 5.3570 0.0078 12 16 9.4857 6.3881 0.0150 13 8 10.4951 5.5924 -0.5908 14 8 9.0472 7.5985 -0.5867 15 6 9.8485 6.6464 1.7735 16 6 11.0838 7.5384 1.9137 17 6 11.3856 7.7525 3.3745 18 1 10.7588 7.2983 4.1276 19 6 12.4619 8.5284 3.7495 20 7 12.7256 8.7148 5.0244 21 14 13.5463 9.3135 2.4468 22 1 13.0145 10.6569 2.1040 23 1 14.9299 9.4474 2.9695 24 1 13.5568 8.4603 1.2315 25 6 8.2008 3.9809 0.0030 26 6 7.0863 3.1678 -0.0032 27 7 3.6087 -0.6432 -0.0069 28 1 4.3882 -1.2207 -0.0127 29 7 2.2719 -1.0614 -0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 1.9875 2.1599 0.0004 34 1 5.6344 1.1332 -0.0011 35 1 4.6898 5.5716 0.0008 36 1 6.6908 7.0018 0.0108 37 1 8.9966 7.1282 2.2534 38 1 10.0383 5.6849 2.2504 39 1 11.9358 7.0570 1.4337 40 1 10.8936 8.4999 1.4368 41 1 13.4826 9.2610 5.2882 42 1 9.1877 3.5422 0.0040 43 1 7.2000 2.0938 -0.0075 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065564957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = 2.555487 kcal Electronic energy + Delta-G solvation = -28378.942143 eV Core-core repulsion = 24132.610667 eV Total energy + Delta-G solvation = -4246.331476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00803 -40.57103 -38.83134 -36.89987 -35.73960 -35.71809 -34.06313 -33.06377 -32.15933 -31.58367 -31.50661 -29.37397 -28.29122 -26.15406 -25.23314 -23.36060 -22.41576 -21.32465 -21.14682 -20.33068 -19.32518 -18.96013 -18.15695 -17.55519 -16.97760 -16.46838 -16.18445 -15.88503 -15.54233 -15.48874 -14.98893 -14.97796 -14.74562 -14.38582 -14.08975 -13.97186 -13.76839 -13.40571 -13.36772 -13.26549 -13.13434 -12.86322 -12.69555 -12.00257 -11.88198 -11.86289 -11.64185 -11.47098 -11.34605 -11.31788 -11.15656 -10.95147 -10.53974 -10.50318 -10.22551 -9.94303 -9.66269 -9.53938 -9.51679 -9.41538 -8.72932 -8.60267 -6.23105 -4.25475 -0.16063 0.30718 0.84768 1.30157 1.65279 2.11559 2.50397 2.78121 3.01459 3.18573 3.21877 3.29709 3.32547 3.80292 4.03046 4.06218 4.26074 4.29629 4.35152 4.41663 4.67182 4.83376 4.92777 5.03751 5.08558 5.14058 5.27461 5.28483 5.36427 5.39200 5.40160 5.42553 5.50002 5.53200 5.66974 5.72612 5.79717 6.13292 6.28266 6.33835 6.52800 6.70371 6.80367 6.83023 7.29218 7.35303 7.45852 8.28354 8.77479 9.35784 10.89027 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.022900 B = 0.001733 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.427509 B =16154.029069 C =16429.340100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.089 3.911 3 C -0.272 4.272 4 C 0.308 3.692 5 N -0.647 5.647 6 C 0.569 3.431 7 O -0.491 6.491 8 C -0.092 4.092 9 C -0.075 4.075 10 C -0.028 4.028 11 C -0.626 4.626 12 S 2.467 3.533 13 O -0.941 6.941 14 O -0.940 6.940 15 C -0.555 4.555 16 C -0.009 4.009 17 C -0.522 4.522 18 H 0.079 0.921 19 C 0.073 3.927 20 N -0.893 5.893 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 C -0.029 4.029 26 C -0.109 4.109 27 N -0.493 5.493 28 H 0.437 0.563 29 N -0.285 5.285 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.175 0.825 34 H 0.413 0.587 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.035 0.965 40 H 0.031 0.969 41 H 0.267 0.733 42 H 0.152 0.848 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.561 -16.804 -10.867 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 C -0.303 4.303 4 C 0.088 3.912 5 N -0.295 5.295 6 C 0.357 3.643 7 O -0.364 6.364 8 C -0.096 4.096 9 C -0.094 4.094 10 C -0.047 4.047 11 C -0.710 4.710 12 S 2.649 3.351 13 O -0.938 6.938 14 O -0.937 6.937 15 C -0.688 4.688 16 C -0.048 4.048 17 C -0.561 4.561 18 H 0.097 0.903 19 C -0.130 4.130 20 N -0.531 5.531 21 Si 0.695 3.305 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.048 4.048 26 C -0.129 4.129 27 N -0.208 5.208 28 H 0.281 0.719 29 N -0.110 5.110 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.192 0.808 34 H 0.251 0.749 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.170 0.830 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.828 -17.271 -11.514 28.025 hybrid contribution 1.185 0.230 0.081 1.210 sum -17.643 -17.041 -11.433 27.063 Atomic orbital electron populations 1.20220 0.86285 1.03575 1.03223 1.22303 0.97303 0.90362 0.97863 1.21591 0.88838 1.01458 1.18453 1.18089 0.88749 0.82636 1.01711 1.42766 1.07607 1.05977 1.73131 1.18266 0.89530 0.80475 0.76069 1.90758 1.25993 1.73503 1.46116 1.19871 0.91997 0.94353 1.03361 1.21404 1.00244 0.91523 0.96239 1.21085 0.90289 1.01355 0.91940 1.31334 1.18322 1.09005 1.12305 1.06600 0.73920 0.74417 0.80161 1.93541 1.55904 1.69548 1.74847 1.93548 1.81024 1.44170 1.74969 1.30029 1.10216 1.10839 1.17709 1.19490 0.90196 0.93946 1.01186 1.20809 1.13773 1.32489 0.89074 0.90292 1.24976 0.97044 0.95619 0.95364 1.69877 1.29101 1.38924 1.15185 0.86930 0.80384 0.80658 0.82511 1.19607 1.20733 1.18565 1.20965 1.00020 0.91523 0.92293 1.21339 0.91595 0.99963 0.99978 1.46369 1.08090 1.02662 1.63631 0.71911 1.77383 0.85017 1.21360 1.27282 0.90263 0.90769 0.90061 0.80830 0.74939 0.83333 0.82786 0.85003 0.85060 0.94634 0.95032 0.92285 0.82998 0.84972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.44 36.01 0.38 -0.09 16 2 C 0.09 0.85 7.20 -82.46 -0.59 0.26 16 3 C -0.27 -2.84 9.58 -39.78 -0.38 -3.22 16 4 C 0.31 2.76 8.11 -152.75 -1.24 1.52 16 5 N -0.65 -4.54 5.37 -12.21 -0.07 -4.61 16 6 C 0.57 5.33 7.74 -12.34 -0.10 5.24 16 7 O -0.49 -5.88 13.47 5.31 0.07 -5.81 16 8 C -0.09 -0.84 5.87 -104.97 -0.62 -1.45 16 9 C -0.07 -0.73 9.60 -39.18 -0.38 -1.10 16 10 C -0.03 -0.30 9.45 -39.64 -0.37 -0.68 16 11 C -0.63 -7.29 5.66 -39.49 -0.22 -7.51 16 12 S 2.47 36.52 5.15 -107.50 -0.55 35.96 16 13 O -0.94 -16.04 17.11 -57.54 -0.98 -17.02 16 14 O -0.94 -16.21 17.11 -57.54 -0.98 -17.19 16 15 C -0.55 -8.88 5.92 37.16 0.22 -8.66 16 16 C -0.01 -0.20 4.05 -27.88 -0.11 -0.31 16 17 C -0.52 -13.80 9.66 -34.44 -0.33 -14.14 16 18 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.10 13.96 55.43 0.77 -25.33 16 21 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 25 C -0.03 -0.29 9.45 -39.64 -0.37 -0.66 16 26 C -0.11 -0.84 9.54 -39.18 -0.37 -1.21 16 27 N -0.49 -3.86 7.40 31.24 0.23 -3.63 16 28 H 0.44 1.90 8.96 -182.61 -1.64 0.27 16 29 N -0.29 -2.90 12.69 33.64 0.43 -2.47 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.17 1.96 5.83 -52.49 -0.31 1.65 16 34 H 0.41 1.45 6.86 -40.82 -0.28 1.17 16 35 H 0.15 1.28 7.65 -52.49 -0.40 0.88 16 36 H 0.15 1.47 7.56 -52.49 -0.40 1.07 16 37 H 0.13 1.87 8.14 -51.93 -0.42 1.45 16 38 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 39 H 0.04 0.77 7.20 -51.93 -0.37 0.40 16 40 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.15 1.27 7.56 -52.48 -0.40 0.87 16 43 H 0.13 0.48 6.41 -52.49 -0.34 0.14 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -37.05 380.82 -10.83 -47.88 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.22 Total: 0.71 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -4.60 Total: -30.09 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 1.37 Total: -36.04 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.90 Total: -40.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: 36.52 SS G_CDS: -0.55 Total: 35.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.05 -10.83 -47.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065564957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.435 kcal (2) G-P(sol) polarization free energy of solvation -37.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds