Wall clock time and date at job start Tue Mar 31 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39735 * 125.77519 * 2 1 4 4 C 1.36151 * 107.85690 * 180.14363 * 3 2 1 5 5 N 1.39377 * 126.26258 * 179.90412 * 4 3 2 6 6 C 1.34780 * 119.99937 * 359.68653 * 5 4 3 7 7 O 1.21568 * 120.00012 * 359.97438 * 6 5 4 8 8 C 1.47810 * 119.99814 * 180.02562 * 6 5 4 9 9 C 1.39590 * 120.14150 * 179.97438 * 8 6 5 10 10 C 1.37956 * 119.84775 * 179.71860 * 9 8 6 11 11 C 1.38363 * 120.14686 * 0.30750 * 10 9 8 12 12 S 1.76199 * 119.85451 * 179.97438 * 11 10 9 13 13 C 1.81400 * 104.44649 * 90.00088 * 12 11 10 14 14 O 1.42095 * 104.27847 * 206.07258 * 12 11 10 15 15 O 1.42102 * 104.27499 * 333.93216 * 12 11 10 16 16 C 1.38363 * 120.29646 * 359.97438 * 11 10 9 17 17 C 1.37955 * 120.14481 * 359.97438 * 16 11 10 18 18 N 1.35813 * 107.47125 * 359.63686 * 4 3 2 19 19 C 1.46499 * 126.09181 * 180.19579 * 18 4 3 20 20 C 1.50694 * 109.47212 * 89.99729 * 19 18 4 21 21 H 1.08002 * 120.00333 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99920 * 179.97438 * 20 19 18 23 23 N 1.31517 * 120.00183 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00096 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46999 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47335 * 119.99631 * 24 22 20 27 27 H 1.48493 * 109.47488 * 240.00082 * 24 22 20 28 28 N 1.30829 * 125.77939 * 179.73656 * 2 1 3 29 29 H 1.09001 * 109.47348 * 270.23820 * 1 2 3 30 30 H 1.09003 * 109.46990 * 30.23986 * 1 2 3 31 31 H 1.09000 * 109.47254 * 150.23931 * 1 2 3 32 32 H 1.07991 * 126.07206 * 0.02834 * 3 2 1 33 33 H 0.96996 * 120.00140 * 179.68189 * 5 4 3 34 34 H 1.08002 * 120.08049 * 0.02562 * 9 8 6 35 35 H 1.07999 * 119.92639 * 180.27692 * 10 9 8 36 36 H 1.08999 * 109.47285 * 60.00154 * 13 12 11 37 37 H 1.09004 * 109.47213 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.47148 * 299.99956 * 13 12 11 39 39 H 1.08003 * 119.92644 * 180.02562 * 16 11 10 40 40 H 1.08001 * 120.07035 * 180.02562 * 17 16 11 41 41 H 1.09003 * 109.46926 * 210.00215 * 19 18 4 42 42 H 1.09004 * 109.46628 * 329.99843 * 19 18 4 43 43 H 0.97001 * 120.00096 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1337 0.0000 4 6 3.6194 0.7148 -0.0032 5 7 4.7495 1.5305 -0.0062 6 6 4.6129 2.8713 -0.0124 7 8 3.5038 3.3693 -0.0159 8 6 5.8114 3.7363 -0.0162 9 6 5.6733 5.1254 -0.0231 10 6 6.7961 5.9270 -0.0207 11 6 8.0569 5.3570 -0.0178 12 16 9.4856 6.3881 -0.0154 13 6 9.8490 6.6539 1.7418 14 8 10.4949 5.5899 -0.6182 15 8 9.0471 7.5960 -0.6221 16 6 8.2007 3.9809 -0.0168 17 6 7.0863 3.1678 -0.0181 18 7 3.6088 -0.6433 0.0030 19 6 4.7859 -1.5154 0.0063 20 6 5.1903 -1.8079 1.4282 21 1 4.6267 -1.3867 2.2476 22 6 6.2793 -2.6142 1.6832 23 7 6.9654 -3.1277 0.6855 24 14 6.7803 -2.9774 3.4457 25 1 5.8525 -2.2859 4.3765 26 1 6.7208 -4.4417 3.6856 27 1 8.1652 -2.4939 3.6764 28 7 2.2719 -1.0614 0.0049 29 1 -0.3634 0.0043 1.0276 30 1 -0.3633 0.8879 -0.5176 31 1 -0.3634 -0.8921 -0.5101 32 1 1.9875 2.1599 0.0004 33 1 5.6344 1.1332 -0.0038 34 1 4.6898 5.5716 -0.0254 35 1 6.6907 7.0018 -0.0216 36 1 10.0389 5.6943 2.2227 37 1 10.7290 7.2897 1.8388 38 1 8.9972 7.1376 2.2199 39 1 9.1877 3.5423 -0.0141 40 1 7.2000 2.0938 -0.0169 41 1 4.5476 -2.4492 -0.5031 42 1 5.6073 -1.0190 -0.5103 43 1 7.7313 -3.6952 0.8649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065592545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:29 Heat of formation + Delta-G solvation = -18.348059 kcal Electronic energy + Delta-G solvation = -29332.308164 eV Core-core repulsion = 25085.070242 eV Total energy + Delta-G solvation = -4247.237922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.54973 -41.20178 -39.52785 -38.14396 -36.97779 -36.44006 -35.70805 -33.90768 -32.94481 -32.22397 -30.77530 -30.25809 -29.80030 -27.83935 -25.97734 -24.76684 -23.99467 -22.84301 -21.41606 -20.97150 -20.07666 -19.20853 -18.88713 -18.43775 -18.06569 -17.18451 -17.09315 -16.78559 -16.75205 -16.44903 -15.95120 -15.75039 -15.67643 -15.50170 -14.69987 -14.66313 -14.48239 -14.27479 -14.11463 -14.07383 -13.89798 -13.79347 -13.59745 -13.42570 -13.15315 -13.12973 -13.03747 -12.92206 -12.73394 -12.40046 -12.34496 -12.17145 -12.03340 -11.79199 -11.72235 -11.52493 -11.13487 -10.78582 -10.61352 -10.22846 -9.68490 -9.15420 -8.38782 -6.56756 -0.98358 -0.73395 0.13628 0.78250 1.19384 1.33748 1.37567 1.48714 1.53188 1.87072 1.95131 2.08293 2.32044 2.45018 2.91580 3.02020 3.14887 3.20020 3.59444 3.74423 3.78075 4.07443 4.12347 4.15539 4.17924 4.38413 4.40003 4.55367 4.65534 4.73645 4.79130 4.80972 4.85676 4.88064 4.88532 4.91722 5.02549 5.06346 5.16809 5.21791 5.48556 5.57925 5.73434 5.90824 6.01929 6.16474 6.52464 6.74251 6.95280 7.15656 8.67895 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.008862 B = 0.002844 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.806884 B = 9843.010549 C =12355.522646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.301 4.301 4 C 0.294 3.706 5 N -0.632 5.632 6 C 0.561 3.439 7 O -0.525 6.525 8 C -0.091 4.091 9 C -0.081 4.081 10 C -0.030 4.030 11 C -0.636 4.636 12 S 2.512 3.488 13 C -0.625 4.625 14 O -0.973 6.973 15 O -0.968 6.968 16 C -0.034 4.034 17 C -0.111 4.111 18 N -0.368 5.368 19 C 0.272 3.728 20 C -0.557 4.557 21 H 0.047 0.953 22 C 0.029 3.971 23 N -0.912 5.912 24 Si 0.969 3.031 25 H -0.277 1.277 26 H -0.276 1.276 27 H -0.262 1.262 28 N -0.325 5.325 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.421 0.579 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.142 0.858 41 H 0.028 0.972 42 H 0.047 0.953 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 21.333 2.787 22.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.332 4.332 4 C 0.072 3.928 5 N -0.279 5.279 6 C 0.350 3.650 7 O -0.401 6.401 8 C -0.094 4.094 9 C -0.101 4.101 10 C -0.048 4.048 11 C -0.720 4.720 12 S 2.693 3.307 13 C -0.779 4.779 14 O -0.970 6.970 15 O -0.965 6.965 16 C -0.052 4.052 17 C -0.131 4.131 18 N -0.154 5.154 19 C 0.153 3.847 20 C -0.595 4.595 21 H 0.066 0.934 22 C -0.173 4.173 23 N -0.550 5.550 24 Si 0.793 3.207 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.187 1.187 28 N -0.150 5.150 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.188 0.812 33 H 0.260 0.740 34 H 0.171 0.829 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.185 0.815 40 H 0.160 0.840 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.023 20.517 1.965 21.214 hybrid contribution 0.233 -0.783 1.091 1.362 sum 5.255 19.734 3.055 20.649 Atomic orbital electron populations 1.20241 0.83739 1.04145 1.03805 1.22898 0.98833 0.89920 0.99023 1.21510 0.88919 1.00992 1.21824 1.18360 0.89234 0.82869 1.02294 1.42759 1.07990 1.05755 1.71442 1.18661 0.89990 0.80528 0.75856 1.90690 1.26960 1.73994 1.48493 1.19974 0.91714 0.94695 1.03034 1.21553 1.01211 0.91013 0.96283 1.21246 0.89732 1.01914 0.91941 1.31136 1.17996 1.08562 1.14330 1.04901 0.72947 0.73050 0.79762 1.30049 1.14347 1.14290 1.19210 1.93562 1.57395 1.70077 1.75959 1.93554 1.81494 1.45777 1.75713 1.21161 1.00288 0.91655 0.92104 1.21685 0.91540 1.01444 0.98389 1.49345 1.06360 1.02642 1.57015 1.19249 0.78555 0.88970 0.97940 1.21422 1.13826 1.32786 0.91493 0.93439 1.25674 0.95322 0.94194 1.02075 1.69996 1.19520 1.32570 1.32922 0.85345 0.78517 0.78213 0.78628 1.20137 1.20175 1.18702 1.77299 0.86349 1.23614 1.27763 0.89577 0.88496 0.90601 0.81194 0.74008 0.82869 0.80630 0.83005 0.82645 0.82533 0.81497 0.84001 0.95385 0.93532 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.44 71.24 0.74 -0.93 16 2 C 0.06 2.32 7.20 43.07 0.31 2.63 16 3 C -0.30 -12.19 9.58 22.15 0.21 -11.97 16 4 C 0.29 12.55 7.68 131.19 1.01 13.55 16 5 N -0.63 -22.37 5.36 -310.81 -1.67 -24.04 16 6 C 0.56 17.82 7.74 86.78 0.67 18.49 16 7 O -0.53 -18.65 13.47 -3.93 -0.05 -18.70 16 8 C -0.09 -2.23 5.87 -20.09 -0.12 -2.34 16 9 C -0.08 -1.62 9.60 22.53 0.22 -1.40 16 10 C -0.03 -0.46 9.45 22.23 0.21 -0.25 16 11 C -0.64 -9.60 5.66 22.33 0.13 -9.47 16 12 S 2.51 29.44 5.80 -56.49 -0.33 29.11 16 13 C -0.62 -1.08 10.80 113.37 1.22 0.14 16 14 O -0.97 -18.97 17.11 -127.65 -2.18 -21.15 16 15 O -0.97 -17.39 17.11 -127.65 -2.18 -19.58 16 16 C -0.03 -0.59 9.45 22.23 0.21 -0.38 16 17 C -0.11 -2.39 9.54 22.53 0.21 -2.17 16 18 N -0.37 -17.63 3.62 -348.32 -1.26 -18.89 16 19 C 0.27 13.90 6.02 85.63 0.52 14.42 16 20 C -0.56 -30.08 9.39 25.60 0.24 -29.84 16 21 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 22 C 0.03 1.53 5.46 84.65 0.46 1.99 16 23 N -0.91 -49.07 13.29 21.45 0.28 -48.79 16 24 Si 0.97 41.19 29.54 68.60 2.03 43.21 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 27 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 28 N -0.33 -15.35 12.56 -47.47 -0.60 -15.94 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.17 6.55 5.83 -2.91 -0.02 6.53 16 33 H 0.42 13.77 6.03 -92.71 -0.56 13.21 16 34 H 0.15 2.85 7.65 -2.91 -0.02 2.83 16 35 H 0.18 1.71 7.56 -2.91 -0.02 1.69 16 36 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.16 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 39 H 0.17 2.29 7.56 -2.91 -0.02 2.27 16 40 H 0.14 2.94 6.41 -2.91 -0.02 2.92 16 41 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 2.29 7.52 -2.38 -0.02 2.28 16 43 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -80.41 384.73 0.80 -79.61 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.51 Total: 22.69 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 6.25 Total: -7.54 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -3.24 Total: -107.66 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -4.42 Total: -59.43 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 29.44 SS G_CDS: -0.33 Total: 29.11 kcal Total: -80.41 0.80 -79.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065592545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.261 kcal (2) G-P(sol) polarization free energy of solvation -80.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds