Wall clock time and date at job start Tue Mar 31 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00188 * 2 1 4 4 H 1.48500 * 109.46807 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.46564 * 120.00099 * 3 2 1 6 6 H 1.48497 * 109.47152 * 240.00253 * 3 2 1 7 7 C 1.37881 * 119.99633 * 180.28283 * 2 1 3 8 8 H 1.08000 * 119.99859 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46918 * 180.02562 * 9 7 2 11 11 O 1.42897 * 109.46708 * 180.02562 * 10 9 7 12 12 C 1.35913 * 116.99834 * 180.02562 * 11 10 9 13 13 C 1.38948 * 119.96121 * 359.97438 * 12 11 10 14 14 C 1.38335 * 120.33967 * 179.97438 * 13 12 11 15 15 C 1.37872 * 120.24941 * 359.97438 * 14 13 12 16 16 C 1.40056 * 119.91676 * 0.02562 * 15 14 13 17 17 C 1.46750 * 120.16655 * 179.97438 * 16 15 14 18 18 C 1.36530 * 120.00339 * 226.71090 * 17 16 15 19 19 C 1.47357 * 121.00854 * 10.94100 * 18 17 16 20 20 O 1.21658 * 119.71180 * 359.95949 * 19 18 17 21 21 N 1.34309 * 120.58028 * 179.97438 * 19 18 17 22 22 C 1.34288 * 122.87611 * 359.97438 * 21 19 18 23 23 O 1.21609 * 119.40689 * 180.02562 * 22 21 19 24 24 C 1.46992 * 121.18217 * 0.02562 * 22 21 19 25 25 C 1.39429 * 121.35273 * 180.02562 * 24 22 21 26 26 C 1.37938 * 119.67442 * 179.13488 * 25 24 22 27 27 C 1.38665 * 120.70392 * 0.83545 * 26 25 24 28 28 C 1.38075 * 120.51353 * 359.43915 * 27 26 25 29 29 C 1.38972 * 119.57586 * 359.97438 * 28 27 26 30 30 C 1.38320 * 119.96234 * 179.72851 * 12 11 10 31 31 H 0.96994 * 119.99807 * 359.72142 * 1 2 3 32 32 H 1.08993 * 109.47127 * 300.00632 * 9 7 2 33 33 H 1.08997 * 109.47051 * 60.00462 * 9 7 2 34 34 H 1.09005 * 109.46954 * 300.00059 * 10 9 7 35 35 H 1.08997 * 109.47303 * 60.00101 * 10 9 7 36 36 H 1.08005 * 119.83138 * 0.02562 * 13 12 11 37 37 H 1.07996 * 119.87705 * 180.02562 * 14 13 12 38 38 H 1.08002 * 120.04143 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.99958 * 46.70487 * 17 16 15 40 40 H 0.96991 * 118.56232 * 179.97438 * 21 19 18 41 41 H 1.07997 * 120.16580 * 359.97438 * 25 24 22 42 42 H 1.07997 * 119.64945 * 180.27677 * 26 25 24 43 43 H 1.08001 * 119.74594 * 179.45339 * 27 26 25 44 44 H 1.08009 * 120.21128 * 180.02562 * 28 27 26 45 45 H 1.07998 * 120.12256 * 359.97438 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6962 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1941 -0.0059 8 1 3.0845 -1.1942 -0.0055 9 6 1.2509 -2.4992 -0.0118 10 6 2.2452 -3.6621 -0.0170 11 8 1.5306 -4.8996 -0.0231 12 6 2.2708 -6.0395 -0.0278 13 6 3.6583 -5.9659 -0.0270 14 6 4.4194 -7.1211 -0.0312 15 6 3.8069 -8.3563 -0.0356 16 6 2.4090 -8.4428 -0.0365 17 6 1.7513 -9.7547 -0.0418 18 6 0.7210 -9.9983 -0.9038 19 6 0.4054 -9.0591 -1.9945 20 8 1.0702 -8.0496 -2.1322 21 7 -0.6099 -9.3076 -2.8379 22 6 -1.3839 -10.4011 -2.7448 23 8 -2.2867 -10.5633 -3.5432 24 6 -1.1595 -11.4052 -1.6950 25 6 -1.9606 -12.5420 -1.5953 26 6 -1.7079 -13.4710 -0.6075 27 6 -0.6762 -13.2782 0.2986 28 6 0.1250 -12.1564 0.2205 29 6 -0.1073 -11.2156 -0.7757 30 6 1.6420 -7.2715 -0.0282 31 1 -0.4849 0.8400 0.0041 32 1 0.6246 -2.5611 0.8781 33 1 0.6240 -2.5527 -0.9018 34 1 2.8719 -3.6003 -0.9067 35 1 2.8718 -3.6084 0.8732 36 1 4.1452 -5.0018 -0.0222 37 1 5.4973 -7.0551 -0.0301 38 1 4.4043 -9.2560 -0.0385 39 1 2.0825 -10.5275 0.6361 40 1 -0.7920 -8.6694 -3.5452 41 1 -2.7665 -12.7012 -2.2964 42 1 -2.3259 -14.3536 -0.5335 43 1 -0.4976 -14.0113 1.0713 44 1 0.9276 -12.0113 0.9286 45 1 0.5636 -7.3295 -0.0244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065594127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:27 Heat of formation + Delta-G solvation = -34.151677 kcal Electronic energy + Delta-G solvation = -30611.522253 eV Core-core repulsion = 26331.695427 eV Total energy + Delta-G solvation = -4279.826826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.130 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.84544 -39.92886 -39.23205 -38.85345 -37.23411 -35.25862 -34.54903 -33.36600 -31.75256 -31.53172 -30.83470 -29.28634 -28.83785 -25.59377 -24.92571 -24.85637 -23.52988 -22.63226 -21.93437 -21.24495 -20.29795 -19.31931 -18.63100 -17.86555 -17.38236 -16.46918 -16.26043 -16.07618 -15.90007 -15.71255 -15.40044 -15.25142 -15.18858 -14.70165 -14.62754 -14.47470 -14.26354 -14.09260 -13.68364 -13.39292 -13.00033 -12.92930 -12.81390 -12.38367 -12.30973 -11.79136 -11.63047 -11.57069 -11.34305 -10.92720 -10.85056 -10.80203 -10.72621 -10.52405 -10.46579 -10.37587 -9.85724 -9.65568 -9.57998 -9.30727 -9.11577 -8.44334 -8.19794 -7.83701 -6.09503 -4.14297 -0.37445 0.47164 0.98536 1.58083 1.67076 2.08703 2.49006 2.74715 3.28962 3.33255 3.35003 3.51771 3.54051 3.77084 3.88137 3.98360 4.18382 4.26517 4.39987 4.50884 4.59388 4.76956 4.87288 4.95185 5.09223 5.14248 5.23745 5.26658 5.29045 5.38516 5.48373 5.55625 5.65058 5.74269 5.82432 5.87864 5.95182 6.03471 6.05601 6.09229 6.26945 6.39338 6.52266 6.54124 6.60771 6.71383 6.88947 7.12095 7.51005 7.63039 7.65153 7.81660 8.07205 8.24513 8.91033 9.49792 11.02037 Molecular weight = 363.13amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.002021 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.150087 B =13850.749334 C =15021.612508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.315 6.315 12 C 0.137 3.863 13 C -0.188 4.188 14 C -0.093 4.093 15 C -0.136 4.136 16 C -0.067 4.067 17 C 0.050 3.950 18 C -0.176 4.176 19 C 0.556 3.444 20 O -0.463 6.463 21 N -0.666 5.666 22 C 0.571 3.429 23 O -0.502 6.502 24 C -0.149 4.149 25 C -0.041 4.041 26 C -0.134 4.134 27 C -0.077 4.077 28 C -0.123 4.123 29 C 0.008 3.992 30 C -0.079 4.079 31 H 0.264 0.736 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.149 0.851 40 H 0.420 0.580 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.483 -31.261 1.276 31.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.090 3.910 13 C -0.206 4.206 14 C -0.111 4.111 15 C -0.154 4.154 16 C -0.067 4.067 17 C 0.032 3.968 18 C -0.179 4.179 19 C 0.346 3.654 20 O -0.335 6.335 21 N -0.331 5.331 22 C 0.362 3.638 23 O -0.377 6.377 24 C -0.152 4.152 25 C -0.060 4.060 26 C -0.152 4.152 27 C -0.095 4.095 28 C -0.141 4.141 29 C 0.007 3.993 30 C -0.098 4.098 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.167 0.833 40 H 0.260 0.740 41 H 0.159 0.841 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.030 -30.758 0.926 30.839 hybrid contribution 0.540 1.311 -0.406 1.475 sum 2.570 -29.447 0.520 29.564 Atomic orbital electron populations 1.69967 1.06101 1.27080 1.49586 1.24998 0.94915 0.99383 0.94924 0.86540 0.79490 0.82591 0.78704 1.21119 1.20103 1.20083 1.20931 0.92993 0.90218 1.52366 0.92417 1.19114 0.94176 0.89000 0.98855 1.23325 0.97096 0.80859 0.99567 1.86186 1.36391 1.13098 1.87157 1.18943 0.90025 0.87466 0.94563 1.21560 0.93145 0.99980 1.05950 1.20739 0.99483 0.91706 0.99182 1.20957 0.92575 0.97756 1.04138 1.18428 0.93373 0.91130 1.03762 1.22774 0.88352 0.94683 0.91022 1.20389 1.01313 0.96218 0.99955 1.18398 0.79287 0.85697 0.82041 1.91090 1.46629 1.25365 1.70426 1.44654 1.31030 1.24385 1.33029 1.18173 0.80656 0.80855 0.84152 1.90866 1.29806 1.75794 1.41224 1.19660 0.99937 0.97601 0.97967 1.21202 0.97008 0.90945 0.96838 1.21243 0.98689 0.99768 0.95480 1.21403 0.93731 0.96620 0.97740 1.21078 1.00807 0.93964 0.98259 1.18836 0.93189 0.92851 0.94388 1.20312 0.99377 0.88979 1.01140 0.92648 0.95437 0.95403 0.93150 0.93157 0.85098 0.85853 0.86058 0.83316 0.74022 0.84076 0.84832 0.84843 0.84570 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 10 C 0.07 1.43 4.68 37.16 0.17 1.61 16 11 O -0.32 -6.70 10.13 -19.47 -0.20 -6.90 16 12 C 0.14 2.45 6.68 -39.29 -0.26 2.18 16 13 C -0.19 -2.92 9.04 -39.28 -0.35 -3.28 16 14 C -0.09 -1.16 10.02 -39.68 -0.40 -1.56 16 15 C -0.14 -1.52 9.80 -39.03 -0.38 -1.91 16 16 C -0.07 -0.81 4.57 -105.11 -0.48 -1.30 16 17 C 0.05 0.44 9.21 -36.76 -0.34 0.10 16 18 C -0.18 -1.74 5.85 -102.90 -0.60 -2.34 16 19 C 0.56 6.94 7.29 -12.76 -0.09 6.85 16 20 O -0.46 -7.27 12.92 5.23 0.07 -7.20 16 21 N -0.67 -7.65 5.10 -13.67 -0.07 -7.72 16 22 C 0.57 6.61 7.85 -12.93 -0.10 6.51 16 23 O -0.50 -6.89 17.19 5.27 0.09 -6.80 16 24 C -0.15 -1.42 5.89 -104.86 -0.62 -2.04 16 25 C -0.04 -0.31 9.62 -39.25 -0.38 -0.69 16 26 C -0.13 -0.71 10.01 -39.53 -0.40 -1.11 16 27 C -0.08 -0.36 10.03 -39.48 -0.40 -0.76 16 28 C -0.12 -0.71 9.48 -39.37 -0.37 -1.08 16 29 C 0.01 0.07 5.90 -104.67 -0.62 -0.55 16 30 C -0.08 -1.24 6.56 -38.89 -0.26 -1.49 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 35 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 36 H 0.13 2.00 6.27 -52.48 -0.33 1.67 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.15 0.68 6.48 -52.49 -0.34 0.34 16 40 H 0.42 4.49 8.79 -40.82 -0.36 4.13 16 41 H 0.14 1.00 7.71 -52.49 -0.40 0.60 16 42 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 43 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.14 0.44 6.51 -52.48 -0.34 0.10 16 45 H 0.12 1.93 7.29 -52.49 -0.38 1.55 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -34.78 384.79 -10.06 -44.83 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.03 Total: 1.41 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -6.43 Total: -13.85 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.67 Total: -33.72 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.04 Total: -20.89 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.78 -10.06 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065594127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.683 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds