Wall clock time and date at job start Tue Mar 31 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.46972 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53817 * 108.39975 * 124.76033 * 10 9 7 12 12 N 1.46958 * 108.58063 * 49.63438 * 11 10 9 13 13 S 1.65594 * 120.59538 * 124.62523 * 12 11 10 14 14 O 1.42104 * 106.40094 * 23.56203 * 13 12 11 15 15 O 1.42098 * 106.40435 * 156.48409 * 13 12 11 16 16 C 1.76203 * 107.22191 * 270.02467 * 13 12 11 17 17 C 1.38297 * 119.96795 * 269.72977 * 16 13 12 18 18 C 1.38253 * 120.13161 * 179.72273 * 17 16 13 19 19 C 1.38153 * 120.06204 * 0.54550 * 18 17 16 20 20 C 1.38793 * 119.93119 * 359.72510 * 19 18 17 21 21 N 1.40271 * 120.05985 * 179.97438 * 20 19 18 22 22 C 1.35067 * 127.38871 * 0.02562 * 21 20 19 23 23 N 1.30742 * 107.27250 * 179.97438 * 22 21 20 24 24 N 1.28423 * 110.64404 * 0.02562 * 23 22 21 25 25 N 1.28945 * 110.20814 * 359.70303 * 24 23 22 26 26 C 1.38098 * 119.96633 * 89.99313 * 16 13 12 27 27 C 1.46967 * 118.81430 * 304.65242 * 12 11 10 28 28 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 29 29 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.60789 * 244.54097 * 10 9 7 31 31 H 1.09004 * 109.61164 * 5.04970 * 10 9 7 32 32 H 1.09002 * 109.74021 * 289.84554 * 11 10 9 33 33 H 1.08996 * 109.52946 * 169.30517 * 11 10 9 34 34 H 1.08001 * 119.93407 * 359.97243 * 17 16 13 35 35 H 1.07997 * 119.97077 * 180.24840 * 18 17 16 36 36 H 1.08001 * 120.02773 * 179.74805 * 19 18 17 37 37 H 1.08000 * 126.36230 * 359.97256 * 22 21 20 38 38 H 1.07997 * 120.03602 * 359.97438 * 26 16 13 39 39 H 1.09005 * 109.60801 * 295.48249 * 27 12 11 40 40 H 1.08997 * 109.75582 * 175.05370 * 27 12 11 41 41 H 1.08999 * 109.61106 * 354.94403 * 28 9 7 42 42 H 1.08997 * 109.60295 * 115.45931 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1102 -4.6041 0.9645 12 7 0.9733 -4.5803 1.8954 13 16 0.1999 -5.9824 2.3174 14 8 1.1327 -7.0338 2.1079 15 8 -0.4242 -5.7352 3.5698 16 6 -1.1000 -6.2316 1.1543 17 6 -2.3574 -5.7116 1.4017 18 6 -3.3784 -5.9001 0.4887 19 6 -3.1479 -6.6187 -0.6686 20 6 -1.8885 -7.1465 -0.9168 21 7 -1.6517 -7.8769 -2.0907 22 6 -2.5334 -8.1555 -3.0752 23 7 -1.8985 -8.8565 -3.9779 24 7 -0.6759 -9.0406 -3.6309 25 7 -0.4440 -8.4711 -2.4975 26 6 -0.8637 -6.9506 -0.0008 27 6 0.5345 -3.2896 2.4447 28 6 0.2343 -2.3379 1.2801 29 1 -0.4850 0.8401 0.0004 30 1 1.0133 -4.0701 -0.8242 31 1 2.7053 -3.5079 -0.8043 32 1 3.0127 -4.2771 1.4809 33 1 2.2499 -5.6157 0.5835 34 1 -2.5411 -5.1536 2.3079 35 1 -4.3582 -5.4895 0.6826 36 1 -3.9470 -6.7691 -1.3794 37 1 -3.5701 -7.8550 -3.1103 38 1 0.1174 -7.3598 -0.1917 39 1 1.3248 -2.8690 3.0664 40 1 -0.3656 -3.4308 3.0430 41 1 0.0947 -1.3262 1.6611 42 1 -0.6681 -2.6649 0.7636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065625939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:20 Heat of formation + Delta-G solvation = 122.797857 kcal Electronic energy + Delta-G solvation = -31089.702235 eV Core-core repulsion = 26815.451699 eV Total energy + Delta-G solvation = -4274.250535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.110 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.51323 -39.89704 -37.72324 -37.29078 -35.85459 -35.50080 -33.93416 -32.72827 -31.74691 -31.20216 -30.58406 -30.28057 -26.52188 -25.51888 -24.61315 -23.36904 -23.01800 -22.69330 -22.24927 -20.29745 -19.58286 -18.52967 -17.69696 -16.96439 -16.92997 -16.87256 -16.26510 -16.25832 -15.88783 -15.32233 -14.88058 -14.44970 -14.15024 -13.98725 -13.83133 -13.73814 -13.61473 -13.53845 -13.09922 -12.95477 -12.67462 -12.32329 -12.21586 -12.16049 -12.03271 -11.98436 -11.54329 -11.36203 -11.23759 -11.10132 -10.90550 -10.83066 -10.81394 -10.51787 -10.34443 -10.06462 -9.96838 -9.75869 -9.16044 -8.91044 -8.57319 -6.79341 -5.92947 -3.36762 -0.11575 0.27775 0.51613 1.19801 1.37467 1.94530 2.80928 3.13718 3.29582 3.37470 3.39820 3.62417 3.74837 3.80775 4.19774 4.23292 4.38420 4.38603 4.55230 4.61423 4.90318 4.96190 4.99621 5.03017 5.23945 5.28139 5.40115 5.50686 5.61675 5.65399 5.67189 5.79387 5.82111 5.94455 6.14596 6.23502 6.28834 6.32193 6.49744 6.69926 6.78496 7.12869 7.42588 7.67183 8.06390 8.29249 9.05690 9.68129 10.24722 11.14919 Molecular weight = 364.11amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.003468 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.750845 B = 8071.313570 C = 9188.483976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.131 3.869 11 C 0.102 3.898 12 N -0.980 5.980 13 S 2.687 3.313 14 O -0.956 6.956 15 O -0.954 6.954 16 C -0.653 4.653 17 C -0.005 4.005 18 C -0.111 4.111 19 C -0.070 4.070 20 C 0.106 3.894 21 N -0.325 5.325 22 C 0.225 3.775 23 N -0.330 5.330 24 N -0.034 5.034 25 N -0.069 5.069 26 C 0.001 3.999 27 C 0.093 3.907 28 C 0.157 3.843 29 H 0.255 0.745 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.240 0.760 38 H 0.157 0.843 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.446 -12.363 1.698 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.003 3.997 11 C -0.024 4.024 12 N -0.821 5.821 13 S 2.775 3.225 14 O -0.946 6.946 15 O -0.945 6.945 16 C -0.737 4.737 17 C -0.025 4.025 18 C -0.131 4.131 19 C -0.091 4.091 20 C 0.013 3.987 21 N -0.115 5.115 22 C -0.072 4.072 23 N -0.178 5.178 24 N -0.029 5.029 25 N -0.054 5.054 26 C -0.021 4.021 27 C -0.033 4.033 28 C 0.030 3.970 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.256 0.744 38 H 0.174 0.826 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.208 -13.454 1.744 15.856 hybrid contribution -0.910 1.627 -0.326 1.893 sum -9.118 -11.827 1.418 15.001 Atomic orbital electron populations 1.70005 1.05313 1.25714 1.53701 1.25048 0.95293 0.98522 1.00570 0.86287 0.79237 0.83409 0.77771 1.21390 1.21497 1.20374 1.19200 0.92793 0.84621 1.41844 0.91473 1.43911 1.36494 1.01554 1.49045 1.21377 0.98368 0.87473 0.92489 1.22202 0.87834 1.00546 0.91849 1.57403 1.42996 1.21826 1.59859 1.02270 0.73286 0.73116 0.73835 1.93578 1.60448 1.54318 1.86270 1.93570 1.77527 1.85219 1.38150 1.31432 1.16769 1.10410 1.15119 1.21189 0.90507 0.92183 0.98585 1.21193 1.00522 0.98383 0.92974 1.21138 0.93986 0.95658 0.98342 1.17544 0.96169 0.99422 0.85592 1.49069 1.09083 1.37144 1.16196 1.27434 0.99786 0.95435 0.84560 1.74494 1.00252 1.18259 1.24828 1.78103 1.08177 1.12325 1.04281 1.82763 1.02049 1.11062 1.09572 1.20644 0.99086 0.92507 0.89828 1.22421 0.99634 0.82994 0.98235 1.21191 0.89055 0.98725 0.88037 0.93519 0.96196 0.91397 0.90661 0.90256 0.82976 0.83205 0.84010 0.74443 0.82589 0.90999 0.90361 0.88107 0.96058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 11.20 55.49 0.62 -23.70 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 3 Si 0.90 20.53 29.59 -169.99 -5.03 15.50 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.26 -6.50 9.57 -15.06 -0.14 -6.65 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 9 N -0.59 -13.40 2.96 -171.76 -0.51 -13.91 16 10 C 0.13 2.49 6.70 -3.36 -0.02 2.47 16 11 C 0.10 1.64 6.56 -3.37 -0.02 1.62 16 12 N -0.98 -15.54 3.26 -113.00 -0.37 -15.91 16 13 S 2.69 39.40 5.69 -107.50 -0.61 38.78 16 14 O -0.96 -15.69 15.97 -57.17 -0.91 -16.60 16 15 O -0.95 -15.18 15.97 -57.17 -0.91 -16.09 16 16 C -0.65 -8.25 5.97 -39.61 -0.24 -8.48 16 17 C 0.00 -0.05 9.52 -39.55 -0.38 -0.43 16 18 C -0.11 -0.89 10.04 -39.61 -0.40 -1.28 16 19 C -0.07 -0.54 9.49 -39.41 -0.37 -0.91 16 20 C 0.11 1.14 6.70 -83.57 -0.56 0.58 16 21 N -0.32 -3.69 3.85 -11.74 -0.05 -3.73 16 22 C 0.22 1.98 12.16 -90.15 -1.10 0.89 16 23 N -0.33 -4.04 12.15 29.64 0.36 -3.68 16 24 N -0.03 -0.49 13.39 60.35 0.81 0.32 16 25 N -0.07 -0.99 13.34 60.35 0.80 -0.18 16 26 C 0.00 0.01 9.17 -39.41 -0.36 -0.35 16 27 C 0.09 1.58 6.54 -3.60 -0.02 1.55 16 28 C 0.16 3.30 5.51 -3.59 -0.02 3.28 16 29 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.12 7.09 -51.93 -0.37 0.75 16 34 H 0.15 1.40 7.61 -52.49 -0.40 1.00 16 35 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.14 0.50 6.88 -52.49 -0.36 0.14 16 37 H 0.24 0.67 7.19 -52.49 -0.38 0.29 16 38 H 0.16 2.05 7.33 -52.49 -0.38 1.66 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.15 7.10 -51.93 -0.37 0.78 16 41 H 0.10 2.38 6.00 -51.93 -0.31 2.07 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -33.99 365.50 -8.65 -42.64 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.65 Total: -1.26 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.72 Total: -7.69 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 1.67 Total: -60.80 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.83 Total: -32.70 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Atomic # 16 Polarization: 39.40 SS G_CDS: -0.61 Total: 38.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.99 -8.65 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065625939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.440 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds