Wall clock time and date at job start Tue Mar 31 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47374 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.46972 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.47003 * 150.00144 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99814 * 162.55448 * 7 2 1 9 9 N 1.36935 * 120.00405 * 342.82520 * 7 2 1 10 10 C 1.46962 * 120.59568 * 151.29568 * 9 7 2 11 11 C 1.53817 * 108.39975 * 124.76033 * 10 9 7 12 12 N 1.46958 * 108.58063 * 49.63438 * 11 10 9 13 13 S 1.65594 * 120.59538 * 124.62523 * 12 11 10 14 14 O 1.42104 * 106.40094 * 23.56203 * 13 12 11 15 15 O 1.42098 * 106.40435 * 156.48409 * 13 12 11 16 16 C 1.76203 * 107.22191 * 270.02467 * 13 12 11 17 17 C 1.38297 * 119.96795 * 269.72977 * 16 13 12 18 18 C 1.38253 * 120.13161 * 179.72273 * 17 16 13 19 19 C 1.38153 * 120.06204 * 0.54550 * 18 17 16 20 20 C 1.38793 * 119.93119 * 359.72510 * 19 18 17 21 21 N 1.40271 * 120.05985 * 179.97438 * 20 19 18 22 22 C 1.35067 * 127.38871 * 0.02562 * 21 20 19 23 23 N 1.30742 * 107.27250 * 179.97438 * 22 21 20 24 24 N 1.28423 * 110.64404 * 0.02562 * 23 22 21 25 25 N 1.28945 * 110.20814 * 359.70303 * 24 23 22 26 26 C 1.38098 * 119.96633 * 89.99313 * 16 13 12 27 27 C 1.46967 * 118.81430 * 304.65242 * 12 11 10 28 28 C 1.46972 * 120.59045 * 331.57419 * 9 7 2 29 29 H 0.97004 * 120.00040 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.60789 * 244.54097 * 10 9 7 31 31 H 1.09004 * 109.61164 * 5.04970 * 10 9 7 32 32 H 1.09002 * 109.74021 * 289.84554 * 11 10 9 33 33 H 1.08996 * 109.52946 * 169.30517 * 11 10 9 34 34 H 1.08001 * 119.93407 * 359.97243 * 17 16 13 35 35 H 1.07997 * 119.97077 * 180.24840 * 18 17 16 36 36 H 1.08001 * 120.02773 * 179.74805 * 19 18 17 37 37 H 1.08000 * 126.36230 * 359.97256 * 22 21 20 38 38 H 1.07997 * 120.03602 * 359.97438 * 26 16 13 39 39 H 1.09005 * 109.60801 * 295.48249 * 27 12 11 40 40 H 1.08997 * 109.75582 * 175.05370 * 27 12 11 41 41 H 1.08999 * 109.61106 * 354.94403 * 28 9 7 42 42 H 1.08997 * 109.60295 * 115.45931 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0530 -1.2235 -0.2810 9 7 1.3714 -2.3617 0.3491 10 6 1.8065 -3.6517 -0.2045 11 6 2.1102 -4.6041 0.9645 12 7 0.9733 -4.5803 1.8954 13 16 0.1999 -5.9824 2.3174 14 8 1.1327 -7.0338 2.1079 15 8 -0.4242 -5.7352 3.5698 16 6 -1.1000 -6.2316 1.1543 17 6 -2.3574 -5.7116 1.4017 18 6 -3.3784 -5.9001 0.4887 19 6 -3.1479 -6.6187 -0.6686 20 6 -1.8885 -7.1465 -0.9168 21 7 -1.6517 -7.8769 -2.0907 22 6 -2.5334 -8.1555 -3.0752 23 7 -1.8985 -8.8565 -3.9779 24 7 -0.6759 -9.0406 -3.6309 25 7 -0.4440 -8.4711 -2.4975 26 6 -0.8637 -6.9506 -0.0008 27 6 0.5345 -3.2896 2.4447 28 6 0.2343 -2.3379 1.2801 29 1 -0.4850 0.8401 0.0004 30 1 1.0133 -4.0701 -0.8242 31 1 2.7053 -3.5079 -0.8043 32 1 3.0127 -4.2771 1.4809 33 1 2.2499 -5.6157 0.5835 34 1 -2.5411 -5.1536 2.3079 35 1 -4.3582 -5.4895 0.6826 36 1 -3.9470 -6.7691 -1.3794 37 1 -3.5701 -7.8550 -3.1103 38 1 0.1174 -7.3598 -0.1917 39 1 1.3248 -2.8690 3.0664 40 1 -0.3656 -3.4308 3.0430 41 1 0.0947 -1.3262 1.6611 42 1 -0.6681 -2.6649 0.7636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065625939.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:19 Heat of formation + Delta-G solvation = 99.171858 kcal Electronic energy + Delta-G solvation = -31090.726735 eV Core-core repulsion = 26815.451699 eV Total energy + Delta-G solvation = -4275.275035 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.110 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.37246 -40.66536 -39.23456 -38.51867 -37.08572 -36.34318 -35.61409 -33.58337 -32.94315 -32.52272 -31.85250 -31.37025 -28.22982 -26.33701 -25.45914 -25.03165 -24.51474 -23.52579 -23.09820 -21.70506 -20.59976 -19.83628 -19.03889 -17.97673 -17.80542 -17.78960 -17.60171 -17.29695 -16.78883 -16.70282 -16.31808 -15.50250 -15.46527 -15.39692 -15.15447 -15.05934 -14.75669 -14.64723 -14.43978 -13.84037 -13.70148 -13.58796 -13.49165 -13.34526 -13.04423 -12.94037 -12.91331 -12.89432 -12.63468 -12.48994 -12.22531 -12.17361 -12.04887 -12.02113 -11.81346 -11.71943 -11.44964 -10.65238 -10.59364 -10.19637 -9.95937 -8.62584 -7.86855 -5.32754 -0.90442 -0.77382 -0.37837 0.39292 0.60602 1.11433 1.48181 1.51513 1.59604 1.75332 2.25391 2.52046 2.61961 2.87549 3.16321 3.23186 3.28303 3.52748 3.61322 3.68812 3.78803 3.80473 3.86186 4.09050 4.19251 4.26456 4.26717 4.42991 4.51458 4.54113 4.68578 4.71624 4.73716 4.84813 4.90683 4.98594 5.07922 5.13295 5.20920 5.28305 5.57550 5.58178 5.64629 5.76006 6.39256 7.15330 7.18580 7.83711 8.36163 9.18034 Molecular weight = 364.11amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.003468 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.750845 B = 8071.313570 C = 9188.483976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.041 4.041 3 Si 0.962 3.038 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.264 4.264 8 H 0.065 0.935 9 N -0.605 5.605 10 C 0.130 3.870 11 C 0.110 3.890 12 N -0.986 5.986 13 S 2.701 3.299 14 O -0.979 6.979 15 O -0.969 6.969 16 C -0.665 4.665 17 C -0.018 4.018 18 C -0.102 4.102 19 C -0.050 4.050 20 C 0.092 3.908 21 N -0.328 5.328 22 C 0.247 3.753 23 N -0.356 5.356 24 N -0.058 5.058 25 N -0.107 5.107 26 C -0.023 4.023 27 C 0.105 3.895 28 C 0.164 3.836 29 H 0.251 0.749 30 H 0.016 0.984 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.162 0.838 35 H 0.193 0.807 36 H 0.196 0.804 37 H 0.301 0.699 38 H 0.138 0.862 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 -12.528 1.618 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.237 4.237 3 Si 0.790 3.210 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.394 4.394 8 H 0.083 0.917 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.017 4.017 12 N -0.824 5.824 13 S 2.793 3.207 14 O -0.969 6.969 15 O -0.959 6.959 16 C -0.753 4.753 17 C -0.038 4.038 18 C -0.121 4.121 19 C -0.070 4.070 20 C -0.001 4.001 21 N -0.118 5.118 22 C -0.048 4.048 23 N -0.205 5.205 24 N -0.053 5.053 25 N -0.092 5.092 26 C -0.045 4.045 27 C -0.021 4.021 28 C 0.037 3.963 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.180 0.820 35 H 0.210 0.790 36 H 0.213 0.787 37 H 0.316 0.684 38 H 0.156 0.844 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -10.795 -13.635 1.703 17.474 hybrid contribution -0.228 1.620 -0.360 1.675 sum -11.023 -12.015 1.343 16.360 Atomic orbital electron populations 1.70125 1.06339 1.25920 1.55032 1.25664 0.95991 1.01021 1.01061 0.85377 0.78214 0.80060 0.77324 1.21639 1.21716 1.19857 1.19471 0.92967 0.85897 1.41096 0.91746 1.44150 1.36791 1.02044 1.49882 1.21463 0.98070 0.86552 0.93601 1.22065 0.88091 1.00677 0.90851 1.57392 1.43474 1.21759 1.59819 1.01561 0.73206 0.72144 0.73753 1.93545 1.61931 1.54754 1.86710 1.93543 1.77639 1.85246 1.39474 1.30884 1.16857 1.12637 1.14919 1.21547 0.90344 0.92055 0.99836 1.21729 1.01391 0.97123 0.91875 1.21779 0.93564 0.92893 0.98793 1.17797 0.97105 1.00026 0.85140 1.49108 1.08790 1.37107 1.16817 1.28592 1.01154 0.92767 0.82328 1.74414 0.99935 1.19766 1.26396 1.78086 1.09479 1.13050 1.04673 1.82721 1.04135 1.12412 1.09970 1.20583 0.99386 0.93636 0.90869 1.22171 1.00687 0.82684 0.96589 1.21023 0.88276 0.98145 0.88826 0.93946 0.96592 0.91382 0.90388 0.88434 0.82031 0.78988 0.78679 0.68390 0.84404 0.91198 0.87933 0.90963 0.97099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.65 11.20 21.65 0.24 -50.41 16 2 C -0.04 -2.16 4.91 84.86 0.42 -1.74 16 3 Si 0.96 42.57 29.59 68.60 2.03 44.60 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.26 -13.63 9.57 84.03 0.80 -12.82 16 8 H 0.06 3.28 7.89 -2.91 -0.02 3.26 16 9 N -0.61 -27.97 2.96 -697.32 -2.06 -30.04 16 10 C 0.13 5.02 6.70 86.57 0.58 5.60 16 11 C 0.11 3.53 6.56 86.57 0.57 4.10 16 12 N -0.99 -31.05 3.26 -511.43 -1.67 -32.72 16 13 S 2.70 78.55 5.69 -56.49 -0.32 78.23 16 14 O -0.98 -32.56 15.97 -128.00 -2.04 -34.61 16 15 O -0.97 -30.09 15.97 -128.00 -2.04 -32.14 16 16 C -0.66 -16.17 5.97 22.25 0.13 -16.04 16 17 C -0.02 -0.33 9.52 22.29 0.21 -0.12 16 18 C -0.10 -1.14 10.04 22.25 0.22 -0.91 16 19 C -0.05 -0.51 9.49 22.38 0.21 -0.30 16 20 C 0.09 1.77 6.70 38.07 0.26 2.02 16 21 N -0.33 -6.82 3.85 -191.05 -0.74 -7.55 16 22 C 0.25 3.50 12.16 180.18 2.19 5.69 16 23 N -0.36 -8.20 12.15 -60.13 -0.73 -8.93 16 24 N -0.06 -1.68 13.39 37.02 0.50 -1.18 16 25 N -0.11 -3.06 13.34 37.02 0.49 -2.57 16 26 C -0.02 -0.57 9.17 22.38 0.21 -0.37 16 27 C 0.10 3.52 6.54 86.41 0.57 4.08 16 28 C 0.16 6.99 5.51 86.41 0.48 7.46 16 29 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 30 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.10 2.77 7.09 -2.39 -0.02 2.76 16 34 H 0.16 2.59 7.61 -2.91 -0.02 2.56 16 35 H 0.19 0.55 8.06 -2.91 -0.02 0.53 16 36 H 0.20 -0.16 6.88 -2.91 -0.02 -0.18 16 37 H 0.30 -0.29 7.19 -2.91 -0.02 -0.31 16 38 H 0.14 3.81 7.33 -2.91 -0.02 3.79 16 39 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.10 2.91 7.10 -2.39 -0.02 2.89 16 41 H 0.07 3.49 6.00 -2.39 -0.01 3.48 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -77.83 365.50 1.57 -76.26 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.07 Total: 4.39 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 6.84 Total: -3.35 kcal Atomic # 7 Polarization: -129.42 SS G_CDS: -3.97 Total: -133.39 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: -4.09 Total: -66.74 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: 78.55 SS G_CDS: -0.32 Total: 78.23 kcal Total: -77.83 1.57 -76.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065625939.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.430 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds