Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39753 * 125.83975 * 2 1 4 4 C 1.36107 * 107.82800 * 180.13989 * 3 2 1 5 5 N 1.39477 * 126.21698 * 179.90020 * 4 3 2 6 6 C 1.34775 * 119.99823 * 359.68991 * 5 4 3 7 7 O 1.21294 * 120.00228 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99922 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.46979 * 179.97438 * 8 6 5 10 10 S 1.81403 * 109.47028 * 180.02562 * 9 8 6 11 11 C 1.76201 * 102.99849 * 179.97438 * 10 9 8 12 12 C 1.38890 * 120.08725 * 359.95439 * 11 10 9 13 13 C 1.38129 * 119.94815 * 180.02562 * 12 11 10 14 14 C 1.38295 * 120.11144 * 0.02562 * 13 12 11 15 15 C 1.38298 * 120.17224 * 0.02562 * 14 13 12 16 16 C 1.38258 * 120.05674 * 359.97358 * 15 14 13 17 17 F 1.35106 * 120.05825 * 180.02562 * 16 15 14 18 18 N 1.35263 * 107.56717 * 359.63445 * 4 3 2 19 19 C 1.46505 * 126.04349 * 180.22574 * 18 4 3 20 20 C 1.50697 * 109.46803 * 90.00497 * 19 18 4 21 21 H 1.07997 * 120.00451 * 359.97438 * 20 19 18 22 22 C 1.37881 * 120.00057 * 179.97438 * 20 19 18 23 23 N 1.31523 * 119.99599 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00326 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47419 * 59.99563 * 24 22 20 26 26 H 1.48495 * 109.47196 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46925 * 299.99833 * 24 22 20 28 28 N 1.30853 * 125.83463 * 179.72883 * 2 1 3 29 29 H 1.08997 * 109.47292 * 270.24112 * 1 2 3 30 30 H 1.08998 * 109.46667 * 30.24379 * 1 2 3 31 31 H 1.09001 * 109.47127 * 150.24177 * 1 2 3 32 32 H 1.08001 * 126.08443 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00028 * 179.68535 * 5 4 3 34 34 H 1.09000 * 109.46924 * 60.00164 * 8 6 5 35 35 H 1.08999 * 109.47011 * 299.99913 * 8 6 5 36 36 H 1.09000 * 109.47073 * 60.00360 * 9 8 6 37 37 H 1.08999 * 109.47263 * 299.99863 * 9 8 6 38 38 H 1.08004 * 120.02607 * 0.04536 * 12 11 10 39 39 H 1.07999 * 119.94866 * 180.27536 * 13 12 11 40 40 H 1.07997 * 119.90794 * 179.97438 * 14 13 12 41 41 H 1.08007 * 119.97156 * 179.97438 * 15 14 13 42 42 H 1.09001 * 109.46762 * 210.00351 * 19 18 4 43 43 H 1.08996 * 109.47318 * 330.00058 * 19 18 4 44 44 H 0.96998 * 119.99420 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7121 -0.0032 5 7 4.7513 1.5274 -0.0062 6 6 4.6157 2.8683 -0.0125 7 8 3.5096 3.3660 -0.0160 8 6 5.8384 3.7492 -0.0152 9 6 5.4089 5.2177 -0.0230 10 16 6.8807 6.2782 -0.0270 11 6 6.1986 7.9028 -0.0366 12 6 4.8210 8.0795 -0.0402 13 6 4.2894 9.3544 -0.0483 14 6 5.1266 10.4552 -0.0534 15 6 6.4990 10.2847 -0.0509 16 6 7.0387 9.0118 -0.0428 17 9 8.3794 8.8453 -0.0399 18 7 3.6092 -0.6405 0.0032 19 6 4.7871 -1.5117 0.0072 20 6 5.1908 -1.8038 1.4294 21 1 4.6268 -1.3824 2.2483 22 6 6.2804 -2.6091 1.6852 23 7 6.9670 -3.1228 0.6879 24 14 6.7805 -2.9719 3.4480 25 1 5.6611 -3.6488 4.1509 26 1 7.9737 -3.8558 3.4521 27 1 7.1038 -1.6997 4.1425 28 7 2.2731 -1.0608 0.0050 29 1 -0.3634 0.0043 1.0276 30 1 -0.3632 0.8878 -0.5176 31 1 -0.3633 -0.8922 -0.5101 32 1 1.9902 2.1596 0.0004 33 1 5.6359 1.1293 -0.0037 34 1 6.4345 3.5407 -0.9036 35 1 6.4326 3.5488 0.8764 36 1 4.8126 5.4266 0.8652 37 1 4.8150 5.4178 -0.9148 38 1 4.1660 7.2208 -0.0363 39 1 3.2182 9.4919 -0.0465 40 1 4.7074 11.4505 -0.0601 41 1 7.1498 11.1467 -0.0553 42 1 4.5499 -2.4456 -0.5023 43 1 5.6084 -1.0146 -0.5089 44 1 7.7337 -3.6890 0.8679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068219367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = 0.303851 kcal Electronic energy + Delta-G solvation = -28257.533035 eV Core-core repulsion = 24023.476710 eV Total energy + Delta-G solvation = -4234.056325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.116 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.96753 -42.43517 -40.66293 -39.75750 -36.29564 -35.61613 -34.28093 -33.82882 -32.29654 -31.40680 -30.78769 -29.87618 -27.82151 -26.34511 -24.73276 -24.15822 -23.60669 -22.45083 -21.25826 -20.72056 -19.06570 -18.88577 -18.45747 -18.16319 -17.76889 -17.32784 -17.18299 -16.74130 -16.72556 -16.33684 -16.05814 -15.88975 -15.45068 -15.11775 -14.99877 -14.60612 -14.44010 -14.32703 -14.12023 -14.03181 -13.64877 -13.54505 -13.45325 -13.38682 -13.11779 -12.98143 -12.90562 -12.71065 -12.59741 -12.29550 -12.12357 -11.94752 -11.70507 -11.46485 -11.30551 -10.95869 -10.88577 -10.76892 -9.89525 -9.64200 -9.07311 -8.52191 -8.37321 -6.54715 0.00410 0.14079 0.22736 0.77372 1.21810 1.35774 1.37696 1.40964 1.48409 1.62158 2.05297 2.20931 2.35253 2.52026 2.93295 3.16871 3.41292 3.61743 3.71877 3.80040 3.83783 3.99316 4.22897 4.25102 4.30814 4.41138 4.55000 4.61336 4.62492 4.69923 4.73547 4.83746 4.89199 4.90500 4.91942 4.96506 5.01992 5.21122 5.21323 5.24087 5.39276 5.49939 5.76077 5.81975 5.96082 6.14717 6.26170 6.55837 6.91529 7.03125 7.17369 8.68825 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.002117 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.056585 B =13226.036471 C =15313.102910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.057 3.943 3 C -0.306 4.306 4 C 0.299 3.701 5 N -0.639 5.639 6 C 0.530 3.470 7 O -0.536 6.536 8 C -0.112 4.112 9 C -0.084 4.084 10 S -0.110 6.110 11 C -0.139 4.139 12 C -0.117 4.117 13 C -0.108 4.108 14 C -0.091 4.091 15 C -0.138 4.138 16 C 0.084 3.916 17 F -0.144 7.144 18 N -0.367 5.367 19 C 0.272 3.728 20 C -0.555 4.555 21 H 0.047 0.953 22 C 0.028 3.972 23 N -0.913 5.913 24 Si 0.967 3.033 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.264 1.264 28 N -0.332 5.332 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.171 0.829 33 H 0.423 0.577 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.026 0.974 43 H 0.050 0.950 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 27.087 -2.493 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.337 4.337 4 C 0.076 3.924 5 N -0.286 5.286 6 C 0.317 3.683 7 O -0.412 6.412 8 C -0.153 4.153 9 C -0.233 4.233 10 S 0.135 5.865 11 C -0.253 4.253 12 C -0.140 4.140 13 C -0.127 4.127 14 C -0.111 4.111 15 C -0.158 4.158 16 C 0.059 3.941 17 F -0.123 7.123 18 N -0.153 5.153 19 C 0.153 3.847 20 C -0.593 4.593 21 H 0.066 0.934 22 C -0.174 4.174 23 N -0.551 5.551 24 Si 0.791 3.209 25 H -0.204 1.204 26 H -0.198 1.198 27 H -0.189 1.189 28 N -0.158 5.158 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.261 0.739 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.186 0.814 41 H 0.177 0.823 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.860 25.529 -2.553 25.724 hybrid contribution 0.100 0.055 0.745 0.754 sum -1.759 25.584 -1.808 25.708 Atomic orbital electron populations 1.20222 0.83961 1.04044 1.03674 1.22903 0.98739 0.90151 0.99042 1.21485 0.88945 1.00844 1.22456 1.18347 0.89631 0.82815 1.01620 1.42968 1.07660 1.06016 1.72003 1.21016 0.92038 0.80630 0.74629 1.90620 1.28116 1.73825 1.48636 1.21303 0.94879 0.90685 1.08470 1.23343 0.97620 0.94733 1.07605 1.85681 1.13044 0.95532 1.92261 1.21988 0.97566 0.96423 1.09304 1.21376 0.91767 1.00125 1.00755 1.21560 1.02050 0.91189 0.97948 1.21503 0.91588 1.00968 0.97065 1.21430 0.97609 0.94811 1.01903 1.17496 0.76547 0.94055 1.06018 1.91486 1.30373 1.96391 1.94055 1.49169 1.06282 1.02959 1.56855 1.19223 0.78664 0.89034 0.97768 1.21364 1.13664 1.32686 0.91627 0.93445 1.25676 0.95432 0.94319 1.01999 1.69984 1.19460 1.32672 1.32990 0.85464 0.77719 0.78721 0.78952 1.20409 1.19764 1.18896 1.77316 0.86473 1.23713 1.28254 0.89736 0.88506 0.90765 0.81190 0.73913 0.85055 0.85496 0.88250 0.87974 0.84177 0.82299 0.81355 0.82304 0.95608 0.93240 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.44 71.24 0.74 -0.91 16 2 C 0.06 2.22 7.21 43.07 0.31 2.54 16 3 C -0.31 -12.03 9.58 22.14 0.21 -11.82 16 4 C 0.30 12.30 7.66 131.32 1.01 13.30 16 5 N -0.64 -20.80 5.42 -308.56 -1.67 -22.47 16 6 C 0.53 14.42 7.79 87.66 0.68 15.11 16 7 O -0.54 -17.03 13.11 -3.07 -0.04 -17.07 16 8 C -0.11 -2.04 5.71 29.85 0.17 -1.87 16 9 C -0.08 -1.51 3.62 71.98 0.26 -1.25 16 10 S -0.11 -2.22 21.53 -56.49 -1.22 -3.44 16 11 C -0.14 -2.76 6.11 22.64 0.14 -2.62 16 12 C -0.12 -1.86 9.36 22.40 0.21 -1.65 16 13 C -0.11 -1.21 10.04 22.26 0.22 -0.98 16 14 C -0.09 -0.86 10.04 22.30 0.22 -0.64 16 15 C -0.14 -1.82 10.02 22.29 0.22 -1.60 16 16 C 0.08 1.65 7.28 22.49 0.16 1.81 16 17 F -0.14 -3.31 16.76 44.97 0.75 -2.55 16 18 N -0.37 -17.37 3.60 -348.71 -1.26 -18.62 16 19 C 0.27 13.85 6.01 85.63 0.51 14.36 16 20 C -0.56 -30.04 9.39 25.60 0.24 -29.80 16 21 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 22 C 0.03 1.46 5.46 84.65 0.46 1.92 16 23 N -0.91 -49.73 13.29 21.45 0.28 -49.45 16 24 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 25 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 28 N -0.33 -15.62 12.57 -47.45 -0.60 -16.21 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.17 6.32 5.83 -2.91 -0.02 6.30 16 33 H 0.42 12.72 7.96 -92.71 -0.74 11.99 16 34 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 1.82 7.71 -2.39 -0.02 1.81 16 37 H 0.10 1.81 7.70 -2.39 -0.02 1.79 16 38 H 0.14 2.07 5.88 -2.91 -0.02 2.06 16 39 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.17 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 2.41 7.50 -2.39 -0.02 2.39 16 44 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -70.50 394.58 4.38 -66.12 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.31 Total: 23.90 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.79 Total: -4.10 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.24 Total: -106.75 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.04 Total: -17.07 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.75 Total: -2.55 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -1.22 Total: -3.44 kcal Total: -70.50 4.38 -66.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068219367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.425 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds