Wall clock time and date at job start Tue Mar 31 2020 05:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39796 * 120.07263 * 5.33757 * 3 2 1 5 5 C 1.37687 * 119.95740 * 179.70146 * 4 3 2 6 6 C 1.39100 * 120.10645 * 0.54405 * 5 4 3 7 7 N 1.39345 * 119.92888 * 179.72211 * 6 5 4 8 8 C 1.46844 * 110.99897 * 183.93652 * 7 6 5 9 9 C 1.53035 * 109.52494 * 174.16135 * 8 7 6 10 10 C 1.53124 * 109.27794 * 59.18054 * 9 8 7 11 11 C 1.53126 * 109.15878 * 302.34791 * 10 9 8 12 12 H 1.08992 * 109.50023 * 297.71261 * 11 10 9 13 13 N 1.46499 * 109.50044 * 177.63196 * 11 10 9 14 14 C 1.34778 * 120.00067 * 85.00271 * 13 11 10 15 15 O 1.21280 * 119.99786 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00164 * 179.97438 * 14 13 11 17 17 S 1.81007 * 109.47171 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99818 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00354 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99524 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00267 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99592 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47571 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46903 * 120.00279 * 22 20 18 25 25 H 1.48504 * 109.47314 * 239.99854 * 22 20 18 26 26 C 1.46854 * 110.99669 * 59.73112 * 7 6 5 27 27 C 1.39339 * 120.13756 * 359.45223 * 6 5 4 28 28 F 1.35105 * 119.98036 * 180.25088 * 27 6 5 29 29 C 1.37826 * 120.03684 * 0.27320 * 27 6 5 30 30 H 1.07995 * 120.01733 * 359.97223 * 4 3 2 31 31 H 1.08006 * 119.94453 * 180.26924 * 5 4 3 32 32 H 1.09002 * 109.46133 * 294.18016 * 8 7 6 33 33 H 1.09002 * 109.46165 * 54.15656 * 8 7 6 34 34 H 1.08999 * 109.50365 * 299.24296 * 9 8 7 35 35 H 1.08993 * 109.50781 * 179.11969 * 9 8 7 36 36 H 1.08998 * 109.52745 * 182.44119 * 10 9 8 37 37 H 1.08999 * 109.52030 * 62.24575 * 10 9 8 38 38 H 0.96997 * 120.00280 * 264.99946 * 13 11 10 39 39 H 1.08993 * 109.47276 * 299.99684 * 16 14 13 40 40 H 1.09004 * 109.47311 * 59.99943 * 16 14 13 41 41 H 0.97001 * 120.00266 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.46310 * 65.82289 * 26 7 6 43 43 H 1.09004 * 109.45281 * 305.84444 * 26 7 6 44 44 H 1.08007 * 120.04638 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -1.2036 -0.1125 5 6 4.6459 -1.1996 -0.1185 6 6 5.3407 -0.0003 -0.0013 7 7 6.7341 -0.0012 -0.0019 8 6 7.2613 1.3505 0.2248 9 6 8.7842 1.2890 0.3628 10 6 9.3840 0.6947 -0.9146 11 6 8.7823 -0.6929 -1.1539 12 1 9.0455 -1.3513 -0.3261 13 7 9.3086 -1.2451 -2.4046 14 6 10.4877 -1.8980 -2.4095 15 8 11.1131 -2.0280 -1.3786 16 6 11.0288 -2.4665 -3.6959 17 16 12.6159 -3.2764 -3.3772 18 6 13.0075 -3.8324 -5.0027 19 1 12.3313 -3.6303 -5.8201 20 6 14.1847 -4.5311 -5.2322 21 7 15.0086 -4.7779 -4.2359 22 14 14.5995 -5.1213 -6.9553 23 1 13.5183 -4.7187 -7.8902 24 1 15.8822 -4.5131 -7.3914 25 1 14.7283 -6.6007 -6.9543 26 6 7.2594 -0.5739 -1.2479 27 6 4.6462 1.2024 0.1111 28 9 5.3243 2.3659 0.2196 29 6 3.2680 1.2058 0.1120 30 1 2.7310 -2.1359 -0.1992 31 1 5.1873 -2.1297 -0.2098 32 1 6.9985 1.9890 -0.6186 33 1 6.8303 1.7599 1.1385 34 1 9.0474 0.6617 1.2144 35 1 9.1767 2.2943 0.5155 36 1 10.4649 0.6088 -0.8039 37 1 9.1538 1.3423 -1.7606 38 1 8.8086 -1.1409 -3.2292 39 1 10.3233 -3.1942 -4.0968 40 1 11.1704 -1.6620 -4.4176 41 1 15.8311 -5.2665 -4.3963 42 1 6.9967 0.0736 -2.0844 43 1 6.8269 -1.5623 -1.4039 44 1 2.7295 2.1380 0.1986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068532106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:57 Heat of formation + Delta-G solvation = 0.276095 kcal Electronic energy + Delta-G solvation = -28672.415176 eV Core-core repulsion = 24438.357648 eV Total energy + Delta-G solvation = -4234.057528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.83148 -40.80405 -39.56007 -38.44895 -36.81024 -35.00197 -33.32596 -32.45819 -31.49004 -30.71215 -30.17183 -28.41573 -25.52275 -25.47111 -24.14158 -23.12963 -22.61513 -20.52589 -20.42593 -19.81444 -17.97413 -17.84976 -17.03932 -16.75802 -16.57931 -16.44294 -15.85961 -15.27943 -15.11198 -15.04046 -14.83152 -14.52965 -14.42242 -14.36212 -14.18321 -13.94809 -13.83726 -13.71820 -13.28528 -13.07900 -13.05743 -12.70577 -12.58168 -12.49350 -12.17453 -12.02039 -11.45624 -11.16889 -11.14890 -11.08904 -11.04896 -10.85140 -10.77176 -10.18765 -9.83465 -9.60104 -9.45994 -9.10916 -8.99333 -8.44283 -8.26784 -6.53294 -6.24731 -3.95411 0.02315 0.49309 2.13560 2.21862 2.76160 3.01682 3.11638 3.17447 3.19415 3.22638 3.27704 3.34011 3.60130 3.69466 4.04151 4.17415 4.26857 4.32805 4.46962 4.52463 4.67210 4.74134 4.80205 4.89426 5.03078 5.06947 5.10751 5.13071 5.24348 5.31213 5.34238 5.39181 5.46880 5.56681 5.57585 5.64399 5.80956 5.84052 5.89082 6.04478 6.08883 6.10838 6.25102 6.54757 6.57543 6.96036 7.56942 7.61357 8.32442 8.54077 9.20919 10.82720 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.001715 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.402740 B =16325.358474 C =17374.281467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.257 3.743 3 C -0.034 4.034 4 C -0.048 4.048 5 C -0.116 4.116 6 C 0.124 3.876 7 N -0.480 5.480 8 C 0.037 3.963 9 C -0.121 4.121 10 C -0.135 4.135 11 C 0.150 3.850 12 H 0.100 0.900 13 N -0.736 5.736 14 C 0.535 3.465 15 O -0.513 6.513 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.051 3.949 27 C 0.047 3.953 28 F -0.128 7.128 29 C -0.077 4.077 30 H 0.144 0.856 31 H 0.150 0.850 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.397 0.603 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.276 13.328 8.173 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.058 4.058 3 C -0.038 4.038 4 C -0.069 4.069 5 C -0.136 4.136 6 C 0.023 3.977 7 N -0.194 5.194 8 C -0.089 4.089 9 C -0.159 4.159 10 C -0.174 4.174 11 C 0.045 3.955 12 H 0.118 0.882 13 N -0.390 5.390 14 C 0.322 3.678 15 O -0.386 6.386 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.074 4.074 27 C 0.025 3.975 28 F -0.106 7.106 29 C -0.099 4.099 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.507 12.770 10.331 28.677 hybrid contribution -0.319 0.531 -3.166 3.226 sum -23.826 13.301 7.165 28.212 Atomic orbital electron populations 1.81299 1.11946 1.06844 1.08801 1.25493 0.92388 0.94119 0.93835 1.15624 0.84523 0.94052 1.09649 1.21135 0.93633 0.97029 0.95144 1.20725 0.93276 0.96984 1.02661 1.19274 0.89192 0.92261 0.96974 1.58789 1.02980 1.23755 1.33905 1.23167 0.96163 0.86530 1.03028 1.21686 0.93673 1.01839 0.98719 1.22048 1.01985 0.95738 0.97653 1.20798 0.90488 0.95615 0.88645 0.88209 1.45982 1.23267 1.59171 1.10592 1.20303 0.79922 0.76763 0.90861 1.90712 1.57333 1.56727 1.33872 1.23535 1.05881 1.03756 0.97263 1.85413 1.14514 1.69267 1.14101 1.22907 1.09320 1.41903 0.94281 0.90868 1.24990 0.95163 0.95253 0.98160 1.70020 1.11017 1.38223 1.30972 0.86122 0.78421 0.78489 0.82485 1.19626 1.20564 1.20550 1.22523 0.95567 1.00839 0.88468 1.17444 0.89735 0.80990 1.09355 1.91526 1.78731 1.46488 1.93875 1.20975 0.91995 0.98565 0.98372 0.83860 0.83221 0.91961 0.88511 0.90578 0.90488 0.90305 0.91908 0.76916 0.89181 0.89218 0.92208 0.92800 0.88896 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.08 18.54 41.84 0.78 -3.30 16 2 C 0.26 1.85 15.33 -22.47 -0.34 1.50 16 3 C -0.03 -0.17 5.74 -106.80 -0.61 -0.79 16 4 C -0.05 -0.20 9.74 -39.20 -0.38 -0.58 16 5 C -0.12 -0.55 9.15 -39.46 -0.36 -0.91 16 6 C 0.12 0.78 5.57 -83.72 -0.47 0.31 16 7 N -0.48 -3.50 4.68 -171.06 -0.80 -4.30 16 8 C 0.04 0.27 3.82 -3.84 -0.01 0.25 16 9 C -0.12 -0.97 6.09 -26.65 -0.16 -1.14 16 10 C -0.14 -1.34 5.58 -26.60 -0.15 -1.49 16 11 C 0.15 1.53 2.61 -67.85 -0.18 1.35 16 12 H 0.10 1.27 7.58 -51.93 -0.39 0.88 16 13 N -0.74 -8.50 5.08 -53.73 -0.27 -8.78 16 14 C 0.54 9.17 7.81 -10.99 -0.09 9.08 16 15 O -0.51 -10.91 15.53 5.56 0.09 -10.83 16 16 C -0.15 -2.92 6.16 36.00 0.22 -2.69 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 19 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 21 N -0.87 -25.73 13.22 55.49 0.73 -24.99 16 22 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.05 0.37 4.76 -3.83 -0.02 0.35 16 27 C 0.05 0.29 6.94 -39.32 -0.27 0.02 16 28 F -0.13 -0.87 12.19 2.25 0.03 -0.84 16 29 C -0.08 -0.39 9.72 -39.14 -0.38 -0.77 16 30 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 31 H 0.15 0.56 7.38 -52.48 -0.39 0.17 16 32 H 0.06 0.45 6.77 -51.93 -0.35 0.09 16 33 H 0.10 0.69 6.48 -51.93 -0.34 0.35 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.40 3.40 8.60 -40.82 -0.35 3.05 16 39 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 40 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.57 6.90 -51.93 -0.36 0.22 16 44 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 LS Contribution 387.63 15.07 5.84 5.84 Total: -1.00 -34.57 387.63 -9.38 -43.95 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.53 Total: -0.81 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -3.01 Total: -8.15 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.44 Total: -41.37 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.03 Total: -0.84 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.57 -9.38 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068532106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.223 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds