Wall clock time and date at job start Tue Mar 31 2020 05:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39796 * 120.07263 * 5.33757 * 3 2 1 5 5 C 1.37687 * 119.95740 * 179.70146 * 4 3 2 6 6 C 1.39100 * 120.10645 * 0.54405 * 5 4 3 7 7 N 1.39345 * 119.92888 * 179.72211 * 6 5 4 8 8 C 1.46844 * 110.99897 * 183.93652 * 7 6 5 9 9 C 1.53035 * 109.52494 * 174.16135 * 8 7 6 10 10 C 1.53124 * 109.27794 * 59.18054 * 9 8 7 11 11 C 1.53126 * 109.15878 * 302.34791 * 10 9 8 12 12 H 1.08992 * 109.50023 * 297.71261 * 11 10 9 13 13 N 1.46499 * 109.50044 * 177.63196 * 11 10 9 14 14 C 1.34778 * 120.00067 * 85.00271 * 13 11 10 15 15 O 1.21280 * 119.99786 * 359.97438 * 14 13 11 16 16 C 1.50696 * 120.00164 * 179.97438 * 14 13 11 17 17 S 1.81007 * 109.47171 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99818 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00354 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99524 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00267 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99592 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47571 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46903 * 120.00279 * 22 20 18 25 25 H 1.48504 * 109.47314 * 239.99854 * 22 20 18 26 26 C 1.46854 * 110.99669 * 59.73112 * 7 6 5 27 27 C 1.39339 * 120.13756 * 359.45223 * 6 5 4 28 28 F 1.35105 * 119.98036 * 180.25088 * 27 6 5 29 29 C 1.37826 * 120.03684 * 0.27320 * 27 6 5 30 30 H 1.07995 * 120.01733 * 359.97223 * 4 3 2 31 31 H 1.08006 * 119.94453 * 180.26924 * 5 4 3 32 32 H 1.09002 * 109.46133 * 294.18016 * 8 7 6 33 33 H 1.09002 * 109.46165 * 54.15656 * 8 7 6 34 34 H 1.08999 * 109.50365 * 299.24296 * 9 8 7 35 35 H 1.08993 * 109.50781 * 179.11969 * 9 8 7 36 36 H 1.08998 * 109.52745 * 182.44119 * 10 9 8 37 37 H 1.08999 * 109.52030 * 62.24575 * 10 9 8 38 38 H 0.96997 * 120.00280 * 264.99946 * 13 11 10 39 39 H 1.08993 * 109.47276 * 299.99684 * 16 14 13 40 40 H 1.09004 * 109.47311 * 59.99943 * 16 14 13 41 41 H 0.97001 * 120.00266 * 179.97438 * 21 20 18 42 42 H 1.08994 * 109.46310 * 65.82289 * 26 7 6 43 43 H 1.09004 * 109.45281 * 305.84444 * 26 7 6 44 44 H 1.08007 * 120.04638 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -1.2036 -0.1125 5 6 4.6459 -1.1996 -0.1185 6 6 5.3407 -0.0003 -0.0013 7 7 6.7341 -0.0012 -0.0019 8 6 7.2613 1.3505 0.2248 9 6 8.7842 1.2890 0.3628 10 6 9.3840 0.6947 -0.9146 11 6 8.7823 -0.6929 -1.1539 12 1 9.0455 -1.3513 -0.3261 13 7 9.3086 -1.2451 -2.4046 14 6 10.4877 -1.8980 -2.4095 15 8 11.1131 -2.0280 -1.3786 16 6 11.0288 -2.4665 -3.6959 17 16 12.6159 -3.2764 -3.3772 18 6 13.0075 -3.8324 -5.0027 19 1 12.3313 -3.6303 -5.8201 20 6 14.1847 -4.5311 -5.2322 21 7 15.0086 -4.7779 -4.2359 22 14 14.5995 -5.1213 -6.9553 23 1 13.5183 -4.7187 -7.8902 24 1 15.8822 -4.5131 -7.3914 25 1 14.7283 -6.6007 -6.9543 26 6 7.2594 -0.5739 -1.2479 27 6 4.6462 1.2024 0.1111 28 9 5.3243 2.3659 0.2196 29 6 3.2680 1.2058 0.1120 30 1 2.7310 -2.1359 -0.1992 31 1 5.1873 -2.1297 -0.2098 32 1 6.9985 1.9890 -0.6186 33 1 6.8303 1.7599 1.1385 34 1 9.0474 0.6617 1.2144 35 1 9.1767 2.2943 0.5155 36 1 10.4649 0.6088 -0.8039 37 1 9.1538 1.3423 -1.7606 38 1 8.8086 -1.1409 -3.2292 39 1 10.3233 -3.1942 -4.0968 40 1 11.1704 -1.6620 -4.4176 41 1 15.8311 -5.2665 -4.3963 42 1 6.9967 0.0736 -2.0844 43 1 6.8269 -1.5623 -1.4039 44 1 2.7295 2.1380 0.1986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068532106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:56 Heat of formation + Delta-G solvation = -22.267084 kcal Electronic energy + Delta-G solvation = -28673.392722 eV Core-core repulsion = 24438.357648 eV Total energy + Delta-G solvation = -4235.035074 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.116 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.28936 -41.44987 -40.52028 -39.24479 -37.46748 -35.93527 -34.56781 -34.13268 -31.99856 -31.65573 -30.75747 -29.57835 -27.63706 -26.06399 -24.75929 -23.68349 -23.18256 -21.68952 -21.26956 -20.28086 -19.80760 -18.48695 -17.87517 -17.56437 -17.25756 -17.05332 -16.86793 -16.77743 -16.39047 -16.00683 -15.74926 -15.62775 -15.09197 -14.95840 -14.88704 -14.85707 -14.59634 -14.53716 -14.45532 -14.35733 -13.67520 -13.64988 -13.53418 -13.17158 -13.13837 -13.08054 -12.90546 -12.58368 -12.53879 -12.16227 -11.94328 -11.85230 -11.69267 -11.52084 -11.14318 -10.92104 -10.69244 -10.23958 -10.09948 -9.96896 -8.93130 -8.63965 -8.33193 -6.10531 -0.41195 0.12743 1.28367 1.42550 1.48179 1.58288 1.58612 1.64348 1.74519 2.13503 2.29070 2.63662 2.70898 2.78931 3.01308 3.18404 3.34398 3.54749 3.69130 3.79065 3.92724 3.98547 4.02596 4.07974 4.18978 4.26110 4.34116 4.37490 4.51147 4.54428 4.56393 4.59314 4.72288 4.80563 4.85722 4.97460 5.03415 5.09748 5.18928 5.22535 5.30295 5.42357 5.44269 5.53937 5.77500 6.06527 6.21829 6.42436 6.53257 7.08673 7.28471 8.76143 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.001715 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.402740 B =16325.358474 C =17374.281467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.283 3.717 3 C -0.038 4.038 4 C -0.035 4.035 5 C -0.113 4.113 6 C 0.117 3.883 7 N -0.490 5.490 8 C 0.043 3.957 9 C -0.116 4.116 10 C -0.132 4.132 11 C 0.151 3.849 12 H 0.072 0.928 13 N -0.708 5.708 14 C 0.539 3.461 15 O -0.562 6.562 16 C -0.129 4.129 17 S -0.152 6.152 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.997 3.003 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.060 3.940 27 C 0.038 3.962 28 F -0.134 7.134 29 C -0.070 4.070 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.417 0.583 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.454 13.750 6.404 29.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.031 4.031 3 C -0.042 4.042 4 C -0.056 4.056 5 C -0.134 4.134 6 C 0.016 3.984 7 N -0.205 5.205 8 C -0.083 4.083 9 C -0.154 4.154 10 C -0.171 4.171 11 C 0.046 3.954 12 H 0.090 0.910 13 N -0.362 5.362 14 C 0.324 3.676 15 O -0.440 6.440 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.200 1.200 26 C -0.066 4.066 27 C 0.015 3.985 28 F -0.112 7.112 29 C -0.092 4.092 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.254 0.746 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.126 0.874 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -25.751 13.224 8.544 30.183 hybrid contribution 0.274 0.474 -2.542 2.601 sum -25.477 13.698 6.002 29.542 Atomic orbital electron populations 1.81329 1.13444 1.08471 1.10770 1.25681 0.92503 0.92614 0.92323 1.15639 0.83385 0.94693 1.10503 1.21341 0.93416 0.97408 0.93407 1.20870 0.93439 0.96906 1.02153 1.19371 0.88545 0.92898 0.97561 1.58756 1.03843 1.23763 1.34101 1.23115 0.94951 0.86785 1.03412 1.21649 0.94680 1.01969 0.97139 1.21989 0.99927 0.95955 0.99228 1.20848 0.92920 0.94912 0.86765 0.90999 1.45654 1.21284 1.56979 1.12256 1.20007 0.81093 0.77075 0.89388 1.90705 1.59158 1.58958 1.35168 1.23375 1.01733 1.04167 0.98799 1.85603 1.20497 1.70916 1.15498 1.23247 1.09778 1.41813 0.94431 0.89833 1.26106 0.94944 0.95255 1.02834 1.70185 1.11660 1.39292 1.33667 0.84925 0.78477 0.77882 0.76783 1.17946 1.20092 1.20012 1.22437 0.92675 1.02256 0.89191 1.17501 0.90015 0.80794 1.10151 1.91507 1.78877 1.46820 1.94017 1.21054 0.91677 0.99066 0.97417 0.81778 0.81981 0.91376 0.88291 0.91941 0.89402 0.93690 0.90452 0.74564 0.86968 0.87250 0.92047 0.91038 0.87371 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.76 18.54 19.00 0.35 -8.40 16 2 C 0.28 3.61 15.33 88.33 1.35 4.96 16 3 C -0.04 -0.29 5.74 -21.27 -0.12 -0.42 16 4 C -0.03 -0.17 9.74 22.52 0.22 0.05 16 5 C -0.11 -0.71 9.15 22.35 0.20 -0.51 16 6 C 0.12 1.15 5.57 38.42 0.21 1.37 16 7 N -0.49 -6.09 4.68 -695.10 -3.25 -9.34 16 8 C 0.04 0.55 3.82 86.33 0.33 0.88 16 9 C -0.12 -1.80 6.09 30.65 0.19 -1.61 16 10 C -0.13 -2.54 5.58 30.68 0.17 -2.37 16 11 C 0.15 2.91 2.61 45.05 0.12 3.02 16 12 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 13 N -0.71 -15.11 5.08 -442.29 -2.25 -17.36 16 14 C 0.54 18.25 7.81 87.66 0.68 18.94 16 15 O -0.56 -24.74 15.53 -3.03 -0.05 -24.79 16 16 C -0.13 -4.79 6.16 71.23 0.44 -4.35 16 17 S -0.15 -8.22 20.57 -56.49 -1.16 -9.38 16 18 C -0.54 -30.39 9.50 67.95 0.65 -29.74 16 19 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 20 C 0.01 0.75 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 22 Si 1.00 42.79 29.55 68.60 2.03 44.82 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C 0.06 0.69 4.76 86.32 0.41 1.10 16 27 C 0.04 0.37 6.94 22.44 0.16 0.53 16 28 F -0.13 -1.55 12.19 44.97 0.55 -1.00 16 29 C -0.07 -0.54 9.72 22.55 0.22 -0.32 16 30 H 0.16 0.15 8.06 -2.91 -0.02 0.13 16 31 H 0.16 0.65 7.38 -2.91 -0.02 0.63 16 32 H 0.07 0.81 6.77 -2.39 -0.02 0.79 16 33 H 0.10 1.24 6.48 -2.39 -0.02 1.23 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.42 5.76 8.60 -92.71 -0.80 4.96 16 39 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 40 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.11 0.96 6.90 -2.38 -0.02 0.94 16 44 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -78.74 387.63 2.46 -76.28 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.26 Total: 11.44 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.70 Total: -7.27 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -4.86 Total: -90.10 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.55 Total: -1.00 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.38 kcal Total: -78.74 2.46 -76.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068532106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.010 kcal (2) G-P(sol) polarization free energy of solvation -78.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds