Wall clock time and date at job start Tue Mar 31 2020 05:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39791 * 120.07138 * 311.14560 * 3 2 1 5 5 C 1.37693 * 119.95935 * 179.68290 * 4 3 2 6 6 C 1.39099 * 120.10273 * 0.57469 * 5 4 3 7 7 N 1.39345 * 119.93060 * 179.71908 * 6 5 4 8 8 C 1.46850 * 110.99360 * 63.68442 * 7 6 5 9 9 C 1.53043 * 109.51831 * 185.83886 * 8 7 6 10 10 C 1.53116 * 109.27913 * 300.82108 * 9 8 7 11 11 C 1.53123 * 109.16452 * 57.65494 * 10 9 8 12 12 H 1.08991 * 109.50045 * 62.32307 * 11 10 9 13 13 N 1.46496 * 109.50574 * 182.40908 * 11 10 9 14 14 C 1.34774 * 119.99544 * 274.99815 * 13 11 10 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 11 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47200 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99878 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00096 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99946 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99679 * 359.97438 * 20 18 17 23 23 H 1.48490 * 109.47080 * 90.00385 * 22 20 18 24 24 H 1.48506 * 109.46635 * 210.00589 * 22 20 18 25 25 H 1.48499 * 109.47138 * 329.99770 * 22 20 18 26 26 C 1.46849 * 111.00024 * 187.89116 * 7 6 5 27 27 C 1.39344 * 120.14010 * 359.45027 * 6 5 4 28 28 F 1.35094 * 119.98321 * 180.27023 * 27 6 5 29 29 C 1.37828 * 120.03448 * 0.24876 * 27 6 5 30 30 H 1.07994 * 120.01838 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.95130 * 180.31824 * 5 4 3 32 32 H 1.09006 * 109.46289 * 65.82770 * 8 7 6 33 33 H 1.09000 * 109.45330 * 305.84634 * 8 7 6 34 34 H 1.08997 * 109.50112 * 180.87893 * 9 8 7 35 35 H 1.08994 * 109.53327 * 60.78188 * 9 8 7 36 36 H 1.09006 * 109.52099 * 297.75105 * 10 9 8 37 37 H 1.09000 * 109.52697 * 177.56039 * 10 9 8 38 38 H 0.96994 * 120.00700 * 94.99935 * 13 11 10 39 39 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 40 40 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 41 41 H 0.97001 * 119.99197 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.46175 * 54.14897 * 26 7 6 43 43 H 1.08995 * 109.46069 * 294.18137 * 26 7 6 44 44 H 1.08010 * 120.05035 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.7950 0.9110 5 6 4.6457 -0.7976 0.9046 6 6 5.3407 -0.0006 0.0010 7 7 6.7342 -0.0015 0.0016 8 6 7.2595 -1.3256 -0.3554 9 6 8.7824 -1.3294 -0.2035 10 6 9.3842 -0.2576 -1.1165 11 6 8.7844 1.1044 -0.7560 12 1 9.0479 1.3577 0.2707 13 7 9.3120 2.1267 -1.6630 14 6 10.4919 2.7206 -1.3955 15 8 11.1170 2.4085 -0.4042 16 6 11.0345 3.7728 -2.3281 17 16 12.6217 4.3751 -1.7002 18 6 13.0149 5.5571 -2.9463 19 1 12.3396 5.7137 -3.7746 20 6 14.1931 6.2863 -2.8641 21 7 14.4866 7.1697 -3.7948 22 14 15.3614 6.0150 -1.4320 23 1 16.3360 4.9511 -1.7830 24 1 16.0889 7.2765 -1.1410 25 1 14.5878 5.6021 -0.2335 26 6 7.2616 1.0376 -0.8919 27 6 4.6465 0.7946 -0.9086 28 9 5.3246 1.5633 -1.7885 29 6 3.2682 0.7969 -0.9114 30 1 2.7306 -1.4115 1.6156 31 1 5.1870 -1.4163 1.6051 32 1 6.9970 -1.5540 -1.3885 33 1 6.8268 -2.0777 0.3042 34 1 9.1735 -2.3075 -0.4836 35 1 9.0459 -1.1150 0.8321 36 1 9.1543 -0.4933 -2.1557 37 1 10.4651 -0.2273 -0.9794 38 1 8.8123 2.3762 -2.4560 39 1 11.1754 3.3418 -3.3193 40 1 10.3300 4.6022 -2.3894 41 1 15.3099 7.6795 -3.7371 42 1 6.8303 2.0017 -0.6221 43 1 6.9990 0.7981 -1.9223 44 1 2.7298 1.4129 -1.6166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068532107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:01 Heat of formation + Delta-G solvation = -0.221683 kcal Electronic energy + Delta-G solvation = -28874.966598 eV Core-core repulsion = 24640.887485 eV Total energy + Delta-G solvation = -4234.079113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.116 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.82547 -40.80943 -39.62682 -38.50181 -36.83910 -35.03429 -33.35818 -32.44656 -31.59536 -30.75445 -30.21199 -28.44810 -25.62797 -25.50035 -24.20519 -23.15601 -22.67447 -20.57156 -20.46748 -19.84613 -18.10310 -17.81339 -17.08001 -16.73986 -16.62760 -16.26607 -15.84826 -15.66400 -15.15302 -15.06895 -14.96067 -14.56465 -14.44300 -14.29797 -14.20764 -13.96453 -13.79034 -13.73608 -13.37991 -13.15244 -12.90108 -12.80315 -12.68339 -12.62233 -12.27532 -12.07411 -11.58882 -11.34526 -11.27016 -11.09762 -11.01523 -10.92932 -10.60652 -10.16562 -9.86642 -9.62393 -9.54399 -9.04892 -8.99379 -8.51365 -8.49222 -6.92821 -6.29734 -4.01560 -0.00515 0.46882 2.11463 2.20816 2.62275 2.91461 2.97540 3.13653 3.18039 3.32010 3.41399 3.49784 3.58115 3.69727 4.01767 4.24887 4.28605 4.32382 4.45706 4.49020 4.58460 4.68152 4.72486 4.75973 4.87327 5.05118 5.08226 5.09405 5.15381 5.22034 5.27724 5.34519 5.38301 5.38824 5.52290 5.57762 5.71778 5.74991 5.86583 5.98544 5.99794 6.05379 6.20945 6.49871 6.56053 6.93873 7.57046 7.93299 8.40848 8.46061 9.16445 10.79472 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.001811 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.207942 B =15458.427908 C =16358.554110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.256 3.744 3 C -0.031 4.031 4 C -0.051 4.051 5 C -0.112 4.112 6 C 0.122 3.878 7 N -0.482 5.482 8 C 0.056 3.944 9 C -0.116 4.116 10 C -0.136 4.136 11 C 0.146 3.854 12 H 0.097 0.903 13 N -0.732 5.732 14 C 0.534 3.466 15 O -0.517 6.517 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.033 3.967 27 C 0.048 3.952 28 F -0.127 7.127 29 C -0.078 4.078 30 H 0.143 0.857 31 H 0.149 0.851 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.648 -20.776 6.904 31.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.059 4.059 3 C -0.036 4.036 4 C -0.072 4.072 5 C -0.132 4.132 6 C 0.021 3.979 7 N -0.197 5.197 8 C -0.068 4.068 9 C -0.154 4.154 10 C -0.175 4.175 11 C 0.040 3.960 12 H 0.115 0.885 13 N -0.386 5.386 14 C 0.320 3.680 15 O -0.391 6.391 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.094 4.094 27 C 0.026 3.974 28 F -0.105 7.105 29 C -0.100 4.100 30 H 0.161 0.839 31 H 0.167 0.833 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.233 0.767 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.937 -21.021 8.920 32.366 hybrid contribution 0.015 0.762 -2.047 2.184 sum -22.922 -20.259 6.873 31.354 Atomic orbital electron populations 1.81302 1.11937 1.07910 1.07619 1.25492 0.92388 0.93989 0.94035 1.15631 0.84536 1.02726 1.00687 1.21119 0.93636 0.96174 0.96312 1.20662 0.93148 1.00706 0.98707 1.19269 0.89192 0.95893 0.93546 1.58843 1.02997 1.06873 1.50958 1.22398 0.96585 0.87637 1.00224 1.21587 0.92864 0.99412 1.01546 1.22045 1.01923 0.94079 0.99408 1.20889 0.91405 0.87696 0.95978 0.88522 1.45908 1.22914 1.41655 1.28100 1.20266 0.80127 0.81455 0.86143 1.90700 1.57589 1.63042 1.27747 1.23285 1.03091 0.99535 1.01599 1.84782 1.19700 1.50429 1.36563 1.22321 1.10448 1.23959 1.10233 0.89389 1.24714 0.96895 0.93607 0.96084 1.69941 1.25089 1.23378 1.33249 0.86734 0.82239 0.78623 0.84248 1.19223 1.19939 1.15914 1.23256 0.94928 0.95394 0.95817 1.17569 0.89843 0.98206 0.91780 1.91531 1.78681 1.73496 1.66793 1.21017 0.92063 0.98314 0.98564 0.83908 0.83297 0.93235 0.89416 0.90360 0.90318 0.91827 0.90348 0.76706 0.88497 0.88424 0.91945 0.88502 0.91053 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.00 18.54 41.84 0.78 -3.23 16 2 C 0.26 1.80 15.33 -22.47 -0.34 1.46 16 3 C -0.03 -0.15 5.74 -106.80 -0.61 -0.77 16 4 C -0.05 -0.17 9.74 -39.20 -0.38 -0.56 16 5 C -0.11 -0.43 9.18 -39.46 -0.36 -0.79 16 6 C 0.12 0.72 5.48 -83.71 -0.46 0.26 16 7 N -0.48 -3.32 4.67 -171.05 -0.80 -4.11 16 8 C 0.06 0.30 5.32 -3.83 -0.02 0.28 16 9 C -0.12 -0.77 6.09 -26.65 -0.16 -0.93 16 10 C -0.14 -1.26 5.58 -26.61 -0.15 -1.41 16 11 C 0.15 1.52 2.62 -67.85 -0.18 1.34 16 12 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 13 N -0.73 -8.67 5.08 -53.73 -0.27 -8.95 16 14 C 0.53 9.02 7.81 -10.98 -0.09 8.93 16 15 O -0.52 -10.66 15.53 5.56 0.09 -10.57 16 16 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 17 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 18 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.39 13.97 55.49 0.78 -25.62 16 22 Si 0.86 21.62 27.74 -169.99 -4.71 16.90 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 26 C 0.03 0.27 3.30 -3.83 -0.01 0.25 16 27 C 0.05 0.31 6.93 -39.32 -0.27 0.03 16 28 F -0.13 -0.95 12.26 2.25 0.03 -0.92 16 29 C -0.08 -0.40 9.72 -39.14 -0.38 -0.78 16 30 H 0.14 0.20 8.06 -52.49 -0.42 -0.23 16 31 H 0.15 0.33 7.61 -52.49 -0.40 -0.07 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.31 7.13 -51.93 -0.37 -0.06 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 3.68 8.60 -40.82 -0.35 3.32 16 39 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 40 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.10 0.86 6.80 -51.93 -0.35 0.51 16 43 H 0.07 0.54 6.48 -51.93 -0.34 0.20 16 44 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -34.81 385.47 -8.88 -43.68 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.59 Total: -0.79 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.98 Total: -6.70 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.48 Total: -41.91 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.03 Total: -0.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.81 -8.88 -43.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068532107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.462 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds