Wall clock time and date at job start Tue Mar 31 2020 05:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39791 * 120.07138 * 311.14560 * 3 2 1 5 5 C 1.37693 * 119.95935 * 179.68290 * 4 3 2 6 6 C 1.39099 * 120.10273 * 0.57469 * 5 4 3 7 7 N 1.39345 * 119.93060 * 179.71908 * 6 5 4 8 8 C 1.46850 * 110.99360 * 63.68442 * 7 6 5 9 9 C 1.53043 * 109.51831 * 185.83886 * 8 7 6 10 10 C 1.53116 * 109.27913 * 300.82108 * 9 8 7 11 11 C 1.53123 * 109.16452 * 57.65494 * 10 9 8 12 12 H 1.08991 * 109.50045 * 62.32307 * 11 10 9 13 13 N 1.46496 * 109.50574 * 182.40908 * 11 10 9 14 14 C 1.34774 * 119.99544 * 274.99815 * 13 11 10 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 13 11 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 13 11 17 17 S 1.81002 * 109.47200 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99878 * 179.97438 * 17 16 14 19 19 H 1.08006 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00096 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99946 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99679 * 359.97438 * 20 18 17 23 23 H 1.48490 * 109.47080 * 90.00385 * 22 20 18 24 24 H 1.48506 * 109.46635 * 210.00589 * 22 20 18 25 25 H 1.48499 * 109.47138 * 329.99770 * 22 20 18 26 26 C 1.46849 * 111.00024 * 187.89116 * 7 6 5 27 27 C 1.39344 * 120.14010 * 359.45027 * 6 5 4 28 28 F 1.35094 * 119.98321 * 180.27023 * 27 6 5 29 29 C 1.37828 * 120.03448 * 0.24876 * 27 6 5 30 30 H 1.07994 * 120.01838 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.95130 * 180.31824 * 5 4 3 32 32 H 1.09006 * 109.46289 * 65.82770 * 8 7 6 33 33 H 1.09000 * 109.45330 * 305.84634 * 8 7 6 34 34 H 1.08997 * 109.50112 * 180.87893 * 9 8 7 35 35 H 1.08994 * 109.53327 * 60.78188 * 9 8 7 36 36 H 1.09006 * 109.52099 * 297.75105 * 10 9 8 37 37 H 1.09000 * 109.52697 * 177.56039 * 10 9 8 38 38 H 0.96994 * 120.00700 * 94.99935 * 13 11 10 39 39 H 1.09001 * 109.46953 * 299.99667 * 16 14 13 40 40 H 1.09000 * 109.47318 * 59.99264 * 16 14 13 41 41 H 0.97001 * 119.99197 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.46175 * 54.14897 * 26 7 6 43 43 H 1.08995 * 109.46069 * 294.18137 * 26 7 6 44 44 H 1.08010 * 120.05035 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.7950 0.9110 5 6 4.6457 -0.7976 0.9046 6 6 5.3407 -0.0006 0.0010 7 7 6.7342 -0.0015 0.0016 8 6 7.2595 -1.3256 -0.3554 9 6 8.7824 -1.3294 -0.2035 10 6 9.3842 -0.2576 -1.1165 11 6 8.7844 1.1044 -0.7560 12 1 9.0479 1.3577 0.2707 13 7 9.3120 2.1267 -1.6630 14 6 10.4919 2.7206 -1.3955 15 8 11.1170 2.4085 -0.4042 16 6 11.0345 3.7728 -2.3281 17 16 12.6217 4.3751 -1.7002 18 6 13.0149 5.5571 -2.9463 19 1 12.3396 5.7137 -3.7746 20 6 14.1931 6.2863 -2.8641 21 7 14.4866 7.1697 -3.7948 22 14 15.3614 6.0150 -1.4320 23 1 16.3360 4.9511 -1.7830 24 1 16.0889 7.2765 -1.1410 25 1 14.5878 5.6021 -0.2335 26 6 7.2616 1.0376 -0.8919 27 6 4.6465 0.7946 -0.9086 28 9 5.3246 1.5633 -1.7885 29 6 3.2682 0.7969 -0.9114 30 1 2.7306 -1.4115 1.6156 31 1 5.1870 -1.4163 1.6051 32 1 6.9970 -1.5540 -1.3885 33 1 6.8268 -2.0777 0.3042 34 1 9.1735 -2.3075 -0.4836 35 1 9.0459 -1.1150 0.8321 36 1 9.1543 -0.4933 -2.1557 37 1 10.4651 -0.2273 -0.9794 38 1 8.8123 2.3762 -2.4560 39 1 11.1754 3.3418 -3.3193 40 1 10.3300 4.6022 -2.3894 41 1 15.3099 7.6795 -3.7371 42 1 6.8303 2.0017 -0.6221 43 1 6.9990 0.7981 -1.9223 44 1 2.7298 1.4129 -1.6166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068532107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:00 Heat of formation + Delta-G solvation = -23.219207 kcal Electronic energy + Delta-G solvation = -28875.963846 eV Core-core repulsion = 24640.887485 eV Total energy + Delta-G solvation = -4235.076361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.116 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.30905 -41.42856 -40.57782 -39.25426 -37.48075 -35.94320 -34.66835 -34.11328 -32.05792 -31.69540 -30.78355 -29.56449 -27.84156 -26.05537 -24.76824 -23.67862 -23.23388 -21.70981 -21.24236 -20.31692 -19.87655 -18.53951 -18.04145 -17.44581 -17.23991 -17.11857 -16.94268 -16.78074 -16.47370 -16.16167 -15.74398 -15.61914 -15.05360 -14.97167 -14.93278 -14.82527 -14.74539 -14.66744 -14.56237 -14.38674 -13.74272 -13.62754 -13.36970 -13.34147 -13.26305 -13.10268 -13.00965 -12.65037 -12.55567 -12.24257 -11.93071 -11.85780 -11.80573 -11.58881 -11.16651 -10.97348 -10.67227 -10.53230 -10.12250 -9.96367 -8.98937 -8.95380 -8.51131 -6.21841 -0.40919 0.12645 0.98827 1.31821 1.46756 1.54982 1.56576 1.57574 1.75552 2.06573 2.25480 2.60055 2.69867 2.71521 2.83708 2.87185 3.18699 3.57431 3.65126 3.77695 3.89344 3.95020 4.00143 4.10316 4.19505 4.23275 4.27713 4.36487 4.47462 4.52345 4.58363 4.63393 4.69081 4.80379 4.88985 4.99228 5.04680 5.09075 5.18944 5.23984 5.29658 5.44336 5.53180 5.71052 5.77820 6.06774 6.11827 6.41752 6.45791 6.94083 7.19342 8.61213 Molecular weight = 363.12amu Principal moments of inertia in cm(-1) A = 0.020505 B = 0.001811 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.207942 B =15458.427908 C =16358.554110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.283 3.717 3 C -0.037 4.037 4 C -0.035 4.035 5 C -0.104 4.104 6 C 0.115 3.885 7 N -0.490 5.490 8 C 0.057 3.943 9 C -0.111 4.111 10 C -0.133 4.133 11 C 0.146 3.854 12 H 0.070 0.930 13 N -0.709 5.709 14 C 0.540 3.460 15 O -0.559 6.559 16 C -0.112 4.112 17 S -0.174 6.174 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.045 3.955 27 C 0.031 3.969 28 F -0.137 7.137 29 C -0.075 4.075 30 H 0.169 0.831 31 H 0.172 0.828 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.415 0.585 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.277 0.723 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.897 -23.034 7.938 34.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.032 4.032 3 C -0.042 4.042 4 C -0.056 4.056 5 C -0.124 4.124 6 C 0.014 3.986 7 N -0.205 5.205 8 C -0.067 4.067 9 C -0.149 4.149 10 C -0.172 4.172 11 C 0.041 3.959 12 H 0.088 0.912 13 N -0.362 5.362 14 C 0.325 3.675 15 O -0.436 6.436 16 C -0.263 4.263 17 S 0.053 5.947 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.184 1.184 25 H -0.161 1.161 26 C -0.082 4.082 27 C 0.008 3.992 28 F -0.116 7.116 29 C -0.097 4.097 30 H 0.186 0.814 31 H 0.190 0.810 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.252 0.748 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.238 -23.293 9.925 35.051 hybrid contribution 0.270 1.396 -2.415 2.802 sum -23.968 -21.897 7.510 33.322 Atomic orbital electron populations 1.81330 1.13463 1.09783 1.09444 1.25704 0.92533 0.92449 0.92494 1.15669 0.83371 1.03602 1.01530 1.21389 0.93528 0.95102 0.95551 1.20898 0.93198 1.00126 0.98182 1.19428 0.88658 0.96415 0.94054 1.58854 1.03747 1.07169 1.50719 1.22483 0.95368 0.87461 1.01387 1.21563 0.93985 0.99130 1.00207 1.22000 1.00080 0.94235 1.00850 1.20993 0.93289 0.87576 0.94059 0.91203 1.45687 1.21121 1.40822 1.28584 1.19895 0.81204 0.81225 0.85170 1.90689 1.59162 1.64449 1.29342 1.23278 0.99764 1.00734 1.02522 1.84694 1.24228 1.49686 1.36109 1.22474 1.10116 1.24789 1.10378 0.91985 1.25566 0.98507 0.93413 0.98490 1.70021 1.26037 1.24406 1.35004 0.85864 0.80240 0.79156 0.81095 1.18650 1.18379 1.16067 1.23078 0.92582 0.95828 0.96715 1.17703 0.90199 0.98893 0.92364 1.91491 1.78909 1.73923 1.67263 1.21057 0.91793 0.98221 0.98619 0.81362 0.81027 0.92547 0.86765 0.88601 0.91286 0.90654 0.93385 0.74817 0.86830 0.86916 0.91389 0.89405 0.90091 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.72 18.54 19.00 0.35 -8.37 16 2 C 0.28 3.56 15.33 88.33 1.35 4.92 16 3 C -0.04 -0.28 5.74 -21.27 -0.12 -0.40 16 4 C -0.03 -0.11 9.74 22.52 0.22 0.11 16 5 C -0.10 -0.41 9.18 22.35 0.21 -0.20 16 6 C 0.11 1.05 5.48 38.42 0.21 1.26 16 7 N -0.49 -5.55 4.67 -695.08 -3.24 -8.79 16 8 C 0.06 0.43 5.32 86.33 0.46 0.89 16 9 C -0.11 -1.24 6.09 30.65 0.19 -1.05 16 10 C -0.13 -2.31 5.58 30.67 0.17 -2.14 16 11 C 0.15 2.91 2.62 45.05 0.12 3.03 16 12 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 13 N -0.71 -16.08 5.08 -442.29 -2.25 -18.33 16 14 C 0.54 17.99 7.81 87.66 0.68 18.68 16 15 O -0.56 -23.28 15.53 -3.02 -0.05 -23.32 16 16 C -0.11 -4.13 6.16 71.24 0.44 -3.70 16 17 S -0.17 -8.70 18.55 -56.49 -1.05 -9.75 16 18 C -0.53 -30.74 10.04 67.95 0.68 -30.06 16 19 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 20 C 0.05 2.67 5.50 84.86 0.47 3.14 16 21 N -0.92 -55.69 13.97 21.65 0.30 -55.39 16 22 Si 0.91 44.83 27.74 68.60 1.90 46.73 16 23 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 26 C 0.05 0.66 3.30 86.33 0.28 0.94 16 27 C 0.03 0.33 6.93 22.44 0.16 0.48 16 28 F -0.14 -1.86 12.26 44.97 0.55 -1.31 16 29 C -0.08 -0.65 9.72 22.56 0.22 -0.43 16 30 H 0.17 -0.27 8.06 -2.91 -0.02 -0.29 16 31 H 0.17 -0.07 7.61 -2.91 -0.02 -0.09 16 32 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.11 0.30 7.13 -2.39 -0.02 0.29 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.42 6.89 8.60 -92.71 -0.80 6.10 16 39 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 40 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 41 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 42 H 0.09 1.46 6.80 -2.39 -0.02 1.44 16 43 H 0.08 1.04 6.48 -2.39 -0.02 1.03 16 44 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -77.76 385.47 2.48 -75.28 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 0.22 Total: 7.78 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.73 Total: -4.54 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -4.84 Total: -90.87 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.55 Total: -1.31 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Total: -77.76 2.48 -75.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068532107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.060 kcal (2) G-P(sol) polarization free energy of solvation -77.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds