Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47083 * 2 1 4 4 C 1.53003 * 109.47210 * 240.00294 * 2 1 3 5 5 O 1.45195 * 109.47029 * 119.99867 * 2 1 3 6 6 C 1.34641 * 117.00209 * 60.00505 * 5 2 1 7 7 O 1.21513 * 119.99749 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00350 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00179 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47375 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47215 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00036 * 5.23182 * 11 10 9 13 13 N 1.34775 * 119.99767 * 185.23796 * 11 10 9 14 14 C 1.46495 * 120.00058 * 4.91802 * 13 11 10 15 15 C 1.50702 * 109.47450 * 84.49774 * 14 13 11 16 16 H 1.08000 * 119.99423 * 354.80751 * 15 14 13 17 17 C 1.37876 * 119.99865 * 174.81033 * 15 14 13 18 18 N 1.31516 * 119.99723 * 185.34444 * 17 15 14 19 19 Si 1.86801 * 120.00284 * 5.34715 * 17 15 14 20 20 H 1.48496 * 109.47219 * 84.71347 * 19 17 15 21 21 H 1.48497 * 109.47094 * 204.71624 * 19 17 15 22 22 H 1.48500 * 109.46834 * 324.71070 * 19 17 15 23 23 C 1.46501 * 119.99611 * 184.91084 * 13 11 10 24 24 C 1.50693 * 109.47602 * 269.99918 * 23 13 11 25 25 C 1.38674 * 120.42282 * 269.72266 * 24 23 13 26 26 C 1.38623 * 118.42226 * 179.78142 * 25 24 23 27 27 C 1.38232 * 119.16118 * 0.51362 * 26 25 24 28 28 N 1.31851 * 120.76286 * 359.73115 * 27 26 25 29 29 C 1.31886 * 121.72405 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46912 * 299.99887 * 1 2 3 31 31 H 1.08993 * 109.47144 * 60.00023 * 1 2 3 32 32 H 1.09005 * 109.46618 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47237 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47310 * 300.00206 * 3 2 1 35 35 H 1.09005 * 109.46961 * 60.00134 * 3 2 1 36 36 H 1.09006 * 109.46800 * 299.99680 * 4 2 1 37 37 H 1.09001 * 109.47329 * 59.99480 * 4 2 1 38 38 H 1.08998 * 109.47112 * 179.97438 * 4 2 1 39 39 H 0.97001 * 119.99772 * 359.97438 * 8 6 5 40 40 H 1.09006 * 109.47142 * 59.99686 * 9 8 6 41 41 H 1.09000 * 109.47167 * 300.00092 * 9 8 6 42 42 H 1.08995 * 109.46748 * 59.99777 * 10 9 8 43 43 H 1.09000 * 109.47096 * 300.00195 * 10 9 8 44 44 H 1.09003 * 109.47224 * 324.49173 * 14 13 11 45 45 H 1.09004 * 109.46727 * 204.49318 * 14 13 11 46 46 H 0.97002 * 120.00076 * 179.97438 * 18 17 15 47 47 H 1.09007 * 109.47314 * 30.00742 * 23 13 11 48 48 H 1.09001 * 109.46829 * 150.00121 * 23 13 11 49 49 H 1.08000 * 120.78444 * 0.02597 * 25 24 23 50 50 H 1.08002 * 120.41973 * 180.21968 * 26 25 24 51 51 H 1.07995 * 119.61498 * 179.74504 * 27 26 25 52 52 H 1.08006 * 119.61808 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4166 9 6 1.6741 -4.0669 2.5831 10 6 2.2753 -4.6153 3.8787 11 6 1.8705 -6.0568 4.0497 12 8 1.2504 -6.6206 3.1729 13 7 2.1973 -6.7194 5.1769 14 6 2.8505 -6.0105 6.2800 15 6 1.8060 -5.3412 7.1356 16 1 0.7683 -5.3636 6.8373 17 6 2.1753 -4.7002 8.2991 18 7 1.2548 -4.2076 9.0990 19 14 3.9828 -4.5313 8.7393 20 1 4.5475 -3.3362 8.0627 21 1 4.1220 -4.3795 10.2100 22 1 4.7157 -5.7442 8.2954 23 6 1.8992 -8.1485 5.2990 24 6 0.5258 -8.3263 5.8931 25 6 0.3618 -8.4203 7.2669 26 6 -0.9206 -8.5787 7.7689 27 6 -1.9846 -8.6480 6.8892 28 7 -1.7906 -8.5600 5.5880 29 6 -0.5856 -8.4032 5.0755 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 2.6282 -2.2370 3.0825 40 1 2.0398 -4.6500 1.7379 41 1 0.5872 -4.1357 2.6288 42 1 1.9099 -4.0322 4.7240 43 1 3.3621 -4.5465 3.8326 44 1 3.5278 -5.2572 5.8774 45 1 3.4149 -6.7205 6.8845 46 1 1.5146 -3.7569 9.9178 47 1 1.9314 -8.6120 4.3128 48 1 2.6388 -8.6199 5.9462 49 1 1.2125 -8.3674 7.9300 50 1 -1.0858 -8.6518 8.8337 51 1 -2.9863 -8.7755 7.2721 52 1 -0.4658 -8.3346 4.0043 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069322646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = -85.500712 kcal Electronic energy + Delta-G solvation = -33202.887069 eV Core-core repulsion = 28781.650508 eV Total energy + Delta-G solvation = -4421.236561 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.72078 -39.95655 -39.04911 -37.45267 -35.52811 -34.95776 -34.04170 -32.95135 -32.11829 -31.34236 -30.31829 -28.21332 -27.56076 -27.49216 -26.25063 -24.01296 -23.08854 -22.54265 -21.95615 -21.40928 -20.16094 -18.68275 -17.86373 -17.24165 -16.90845 -16.57964 -16.34224 -16.27867 -15.72493 -15.49248 -15.36146 -14.83373 -14.78689 -14.45734 -14.36397 -14.17572 -13.51390 -13.48313 -13.31199 -12.94200 -12.75869 -12.65631 -12.52500 -12.44412 -12.31337 -12.24417 -12.03951 -12.02074 -11.93569 -11.67237 -11.54555 -11.40085 -11.19305 -11.07595 -11.02073 -10.80416 -10.42230 -10.40297 -10.04351 -9.78042 -9.42904 -9.19610 -9.06653 -8.99847 -8.82460 -8.51797 -7.93599 -6.31104 -4.33408 1.56153 1.83991 2.18528 2.92225 3.07354 3.13887 3.15263 3.18272 3.66807 4.15600 4.20112 4.40215 4.58354 4.62386 4.76772 4.90971 4.97490 5.00754 5.08683 5.29768 5.30180 5.32768 5.37393 5.38584 5.45864 5.48133 5.53097 5.55641 5.62368 5.73019 5.75828 5.82514 5.83378 5.92416 6.06584 6.12158 6.15969 6.18994 6.23326 6.26268 6.30579 6.44416 6.48779 6.55347 6.64473 6.79940 7.11662 7.20882 7.31566 7.49626 7.95599 8.26095 8.44674 8.45370 8.68934 8.79005 9.27097 10.80876 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.002638 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.154389 B =10609.654899 C =12343.367099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.568 6.568 8 N -0.709 5.709 9 C 0.155 3.845 10 C -0.154 4.154 11 C 0.529 3.471 12 O -0.561 6.561 13 N -0.588 5.588 14 C 0.207 3.793 15 C -0.539 4.539 16 H 0.078 0.922 17 C 0.079 3.921 18 N -0.885 5.885 19 Si 0.868 3.132 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.266 1.266 23 C 0.166 3.834 24 C -0.147 4.147 25 C -0.032 4.032 26 C -0.175 4.175 27 C 0.090 3.910 28 N -0.496 5.496 29 C 0.115 3.885 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.406 0.594 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.267 0.733 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.133 0.867 50 H 0.128 0.872 51 H 0.147 0.853 52 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 2.763 -10.388 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.457 6.457 8 N -0.368 5.368 9 C 0.033 3.967 10 C -0.194 4.194 11 C 0.317 3.683 12 O -0.441 6.441 13 N -0.318 5.318 14 C 0.086 3.914 15 C -0.578 4.578 16 H 0.096 0.904 17 C -0.125 4.125 18 N -0.522 5.522 19 Si 0.695 3.305 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.191 1.191 23 C 0.043 3.957 24 C -0.150 4.150 25 C -0.059 4.059 26 C -0.195 4.195 27 C -0.067 4.067 28 N -0.205 5.205 29 C -0.042 4.042 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.241 0.759 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.136 0.864 43 H 0.114 0.886 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.151 0.849 50 H 0.146 0.854 51 H 0.164 0.836 52 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.887 2.313 -11.677 12.249 hybrid contribution 1.853 0.732 1.681 2.607 sum 4.740 3.044 -9.996 11.474 Atomic orbital electron populations 1.22524 0.94008 1.05254 1.02381 1.22032 0.94412 0.91438 0.82201 1.21857 1.02170 0.92673 1.03055 1.22519 1.01451 1.03662 0.96419 1.86298 1.71670 1.23836 1.46357 1.18029 0.78999 0.80369 0.82375 1.90904 1.41014 1.70405 1.43376 1.44773 1.55430 1.13034 1.23560 1.21050 1.00799 0.77556 0.97324 1.21812 1.02715 0.95314 0.99553 1.20041 0.78828 0.87921 0.81490 1.90638 1.41130 1.69594 1.42728 1.47945 1.58927 1.08735 1.16144 1.19873 0.93758 0.92620 0.85178 1.21311 0.95338 1.34889 1.06227 0.90367 1.24866 0.97000 0.94953 0.95683 1.69901 1.32939 1.37132 1.12185 0.87023 0.85936 0.79312 0.78275 1.19770 1.21037 1.19051 1.20144 0.92117 0.82483 1.01004 1.21148 0.97594 1.01623 0.94600 1.21433 0.97625 0.92216 0.94624 1.22036 0.93789 1.02639 1.00994 1.22627 0.98901 0.96145 0.89036 1.67665 1.25154 1.12970 1.14687 1.22725 0.87082 0.93969 1.00455 0.92108 0.91291 0.89226 0.91536 0.90263 0.91439 0.89254 0.91290 0.92258 0.75879 0.90505 0.90457 0.86413 0.88620 0.95306 0.94623 0.92331 0.89668 0.90006 0.84931 0.85361 0.83599 0.82800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 2 C 0.14 1.50 1.13 -90.62 -0.10 1.40 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 4 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 5 O -0.37 -4.90 9.94 -40.33 -0.40 -5.30 16 6 C 0.65 9.77 8.06 54.05 0.44 10.21 16 7 O -0.57 -9.78 11.88 -19.28 -0.23 -10.01 16 8 N -0.71 -9.72 5.56 -65.28 -0.36 -10.09 16 9 C 0.16 2.36 4.98 -4.04 -0.02 2.34 16 10 C -0.15 -2.35 4.31 -27.88 -0.12 -2.47 16 11 C 0.53 9.55 7.60 -10.99 -0.08 9.46 16 12 O -0.56 -11.08 14.87 5.56 0.08 -11.00 16 13 N -0.59 -10.54 2.45 -176.43 -0.43 -10.98 16 14 C 0.21 3.99 4.02 -5.20 -0.02 3.97 16 15 C -0.54 -12.78 9.33 -34.44 -0.32 -13.10 16 16 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 17 C 0.08 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.88 -24.16 13.96 55.43 0.77 -23.39 16 19 Si 0.87 18.22 27.48 -169.99 -4.67 13.55 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -5.23 6.58 56.52 0.37 -4.86 16 23 C 0.17 2.67 5.56 -5.20 -0.03 2.64 16 24 C -0.15 -2.57 5.48 -104.49 -0.57 -3.14 16 25 C -0.03 -0.56 9.86 -39.28 -0.39 -0.95 16 26 C -0.17 -2.86 10.11 -39.44 -0.40 -3.26 16 27 C 0.09 1.49 11.18 -17.55 -0.20 1.30 16 28 N -0.50 -9.26 10.36 -13.25 -0.14 -9.40 16 29 C 0.11 2.12 10.76 -17.55 -0.19 1.93 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.41 4.71 8.58 -40.82 -0.35 4.36 16 40 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.12 1.97 7.38 -51.93 -0.38 1.59 16 43 H 0.10 1.23 7.82 -51.93 -0.41 0.82 16 44 H 0.03 0.53 6.34 -51.93 -0.33 0.20 16 45 H 0.04 0.68 6.80 -51.93 -0.35 0.32 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.09 1.29 7.45 -51.92 -0.39 0.90 16 48 H 0.08 1.14 7.81 -51.93 -0.41 0.73 16 49 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 50 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 51 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 52 H 0.15 2.82 7.41 -52.48 -0.39 2.43 16 LS Contribution 425.81 15.07 6.42 6.42 Total: -1.00 -30.70 425.81 -8.38 -39.08 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -8.27 Total: 13.09 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -1.15 Total: 8.02 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.16 Total: -53.84 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.55 Total: -26.31 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.67 Total: 13.55 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -30.70 -8.38 -39.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069322646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.419 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds