Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47083 * 2 1 4 4 C 1.53003 * 109.47210 * 240.00294 * 2 1 3 5 5 O 1.45195 * 109.47029 * 119.99867 * 2 1 3 6 6 C 1.34641 * 117.00209 * 60.00505 * 5 2 1 7 7 O 1.21513 * 119.99749 * 359.97438 * 6 5 2 8 8 N 1.34772 * 120.00350 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00179 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47375 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47215 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00036 * 5.23182 * 11 10 9 13 13 N 1.34775 * 119.99767 * 185.23796 * 11 10 9 14 14 C 1.46495 * 120.00058 * 4.91802 * 13 11 10 15 15 C 1.50702 * 109.47450 * 84.49774 * 14 13 11 16 16 H 1.08000 * 119.99423 * 354.80751 * 15 14 13 17 17 C 1.37876 * 119.99865 * 174.81033 * 15 14 13 18 18 N 1.31516 * 119.99723 * 185.34444 * 17 15 14 19 19 Si 1.86801 * 120.00284 * 5.34715 * 17 15 14 20 20 H 1.48496 * 109.47219 * 84.71347 * 19 17 15 21 21 H 1.48497 * 109.47094 * 204.71624 * 19 17 15 22 22 H 1.48500 * 109.46834 * 324.71070 * 19 17 15 23 23 C 1.46501 * 119.99611 * 184.91084 * 13 11 10 24 24 C 1.50693 * 109.47602 * 269.99918 * 23 13 11 25 25 C 1.38674 * 120.42282 * 269.72266 * 24 23 13 26 26 C 1.38623 * 118.42226 * 179.78142 * 25 24 23 27 27 C 1.38232 * 119.16118 * 0.51362 * 26 25 24 28 28 N 1.31851 * 120.76286 * 359.73115 * 27 26 25 29 29 C 1.31886 * 121.72405 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46912 * 299.99887 * 1 2 3 31 31 H 1.08993 * 109.47144 * 60.00023 * 1 2 3 32 32 H 1.09005 * 109.46618 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47237 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47310 * 300.00206 * 3 2 1 35 35 H 1.09005 * 109.46961 * 60.00134 * 3 2 1 36 36 H 1.09006 * 109.46800 * 299.99680 * 4 2 1 37 37 H 1.09001 * 109.47329 * 59.99480 * 4 2 1 38 38 H 1.08998 * 109.47112 * 179.97438 * 4 2 1 39 39 H 0.97001 * 119.99772 * 359.97438 * 8 6 5 40 40 H 1.09006 * 109.47142 * 59.99686 * 9 8 6 41 41 H 1.09000 * 109.47167 * 300.00092 * 9 8 6 42 42 H 1.08995 * 109.46748 * 59.99777 * 10 9 8 43 43 H 1.09000 * 109.47096 * 300.00195 * 10 9 8 44 44 H 1.09003 * 109.47224 * 324.49173 * 14 13 11 45 45 H 1.09004 * 109.46727 * 204.49318 * 14 13 11 46 46 H 0.97002 * 120.00076 * 179.97438 * 18 17 15 47 47 H 1.09007 * 109.47314 * 30.00742 * 23 13 11 48 48 H 1.09001 * 109.46829 * 150.00121 * 23 13 11 49 49 H 1.08000 * 120.78444 * 0.02597 * 25 24 23 50 50 H 1.08002 * 120.41973 * 180.21968 * 26 25 24 51 51 H 1.07995 * 119.61498 * 179.74504 * 27 26 25 52 52 H 1.08006 * 119.61808 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0681 -2.6657 2.4166 9 6 1.6741 -4.0669 2.5831 10 6 2.2753 -4.6153 3.8787 11 6 1.8705 -6.0568 4.0497 12 8 1.2504 -6.6206 3.1729 13 7 2.1973 -6.7194 5.1769 14 6 2.8505 -6.0105 6.2800 15 6 1.8060 -5.3412 7.1356 16 1 0.7683 -5.3636 6.8373 17 6 2.1753 -4.7002 8.2991 18 7 1.2548 -4.2076 9.0990 19 14 3.9828 -4.5313 8.7393 20 1 4.5475 -3.3362 8.0627 21 1 4.1220 -4.3795 10.2100 22 1 4.7157 -5.7442 8.2954 23 6 1.8992 -8.1485 5.2990 24 6 0.5258 -8.3263 5.8931 25 6 0.3618 -8.4203 7.2669 26 6 -0.9206 -8.5787 7.7689 27 6 -1.9846 -8.6480 6.8892 28 7 -1.7906 -8.5600 5.5880 29 6 -0.5856 -8.4032 5.0755 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 2.6282 -2.2370 3.0825 40 1 2.0398 -4.6500 1.7379 41 1 0.5872 -4.1357 2.6288 42 1 1.9099 -4.0322 4.7240 43 1 3.3621 -4.5465 3.8326 44 1 3.5278 -5.2572 5.8774 45 1 3.4149 -6.7205 6.8845 46 1 1.5146 -3.7569 9.9178 47 1 1.9314 -8.6120 4.3128 48 1 2.6388 -8.6199 5.9462 49 1 1.2125 -8.3674 7.9300 50 1 -1.0858 -8.6518 8.8337 51 1 -2.9863 -8.7755 7.2721 52 1 -0.4658 -8.3346 4.0043 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069322646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -105.150595 kcal Electronic energy + Delta-G solvation = -33203.739152 eV Core-core repulsion = 28781.650508 eV Total energy + Delta-G solvation = -4422.088644 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83197 -41.33921 -40.44694 -38.53706 -36.99102 -36.24303 -35.00423 -34.65446 -33.61527 -32.70301 -31.59998 -29.88466 -28.35433 -28.27837 -27.61129 -25.32275 -24.52440 -24.13452 -23.17640 -22.67690 -21.23457 -19.98011 -19.09292 -19.03541 -18.21531 -17.93450 -17.48435 -17.44607 -17.11690 -16.88954 -16.74901 -16.10794 -16.04866 -15.69573 -15.51305 -15.36562 -14.82393 -14.73280 -14.61969 -14.39822 -14.08359 -14.01278 -13.89730 -13.70912 -13.39226 -13.33761 -13.15818 -12.99326 -12.87436 -12.85298 -12.67855 -12.57347 -12.52397 -12.32589 -12.30613 -12.28374 -11.97507 -11.64162 -11.38735 -11.16308 -10.89736 -10.72712 -10.56046 -10.39932 -10.27868 -9.89401 -9.43664 -8.20486 -6.26768 0.20413 0.45279 1.10008 1.46783 1.48456 1.55916 1.71491 1.73782 2.31754 2.40880 2.99379 3.13686 3.16981 3.59881 3.72671 3.76778 3.78376 3.81137 3.96126 3.96940 4.02519 4.08256 4.16994 4.20928 4.46830 4.52192 4.57012 4.62615 4.65727 4.70101 4.76670 4.77687 4.82973 4.84203 4.86172 4.89293 4.92073 4.95586 4.96382 5.09333 5.22818 5.28839 5.29620 5.36653 5.42769 5.51666 5.56592 5.66951 5.86479 6.26660 6.37608 6.59409 6.80222 7.06776 7.24902 7.32401 7.40002 8.95147 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.009202 B = 0.002638 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.154389 B =10609.654899 C =12343.367099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.122 3.878 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.646 3.354 7 O -0.594 6.594 8 N -0.700 5.700 9 C 0.169 3.831 10 C -0.143 4.143 11 C 0.521 3.479 12 O -0.582 6.582 13 N -0.589 5.589 14 C 0.211 3.789 15 C -0.523 4.523 16 H 0.024 0.976 17 C 0.024 3.976 18 N -0.942 5.942 19 Si 0.934 3.066 20 H -0.262 1.262 21 H -0.298 1.298 22 H -0.235 1.235 23 C 0.162 3.838 24 C -0.151 4.151 25 C -0.046 4.046 26 C -0.178 4.178 27 C 0.082 3.918 28 N -0.519 5.519 29 C 0.098 3.902 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.264 0.736 47 H 0.092 0.908 48 H 0.109 0.891 49 H 0.139 0.861 50 H 0.152 0.848 51 H 0.176 0.824 52 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.979 3.456 -10.603 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.086 3.914 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.282 6.282 6 C 0.399 3.601 7 O -0.485 6.485 8 N -0.361 5.361 9 C 0.046 3.954 10 C -0.183 4.183 11 C 0.310 3.690 12 O -0.464 6.464 13 N -0.318 5.318 14 C 0.089 3.911 15 C -0.562 4.562 16 H 0.043 0.957 17 C -0.175 4.175 18 N -0.581 5.581 19 Si 0.758 3.242 20 H -0.186 1.186 21 H -0.224 1.224 22 H -0.158 1.158 23 C 0.039 3.961 24 C -0.154 4.154 25 C -0.072 4.072 26 C -0.197 4.197 27 C -0.075 4.075 28 N -0.228 5.228 29 C -0.059 4.059 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.256 0.744 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.149 0.851 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.127 0.873 49 H 0.157 0.843 50 H 0.169 0.831 51 H 0.193 0.807 52 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.598 3.004 -11.912 13.500 hybrid contribution 0.861 0.520 1.704 1.979 sum 6.459 3.523 -10.208 12.583 Atomic orbital electron populations 1.22493 0.94354 1.03488 1.03595 1.22465 0.94421 0.92933 0.81583 1.21884 1.02560 0.90358 1.04327 1.22469 1.01779 1.02089 0.97271 1.86316 1.71553 1.22707 1.47606 1.18192 0.78700 0.80940 0.82227 1.90902 1.42106 1.71116 1.44355 1.44623 1.55329 1.12454 1.23651 1.20749 0.99002 0.78413 0.97265 1.21738 1.04710 0.93221 0.98642 1.20511 0.78360 0.88837 0.81296 1.90633 1.41922 1.70311 1.43489 1.47965 1.58746 1.09442 1.15639 1.19799 0.92753 0.93352 0.85157 1.21339 0.93914 1.34402 1.06518 0.95746 1.25691 1.01668 0.94624 0.95533 1.70082 1.35680 1.39282 1.13071 0.85945 0.80255 0.80827 0.77172 1.18626 1.22438 1.15754 1.20357 0.91951 0.81749 1.02025 1.21296 0.98098 1.01297 0.94722 1.21648 0.98375 0.92502 0.94710 1.22371 0.93474 1.01616 1.02282 1.23144 1.00494 0.95416 0.88408 1.67645 1.25463 1.13723 1.15943 1.22729 0.87679 0.95063 1.00417 0.92223 0.88763 0.92380 0.90926 0.87746 0.91411 0.92264 0.88883 0.91631 0.74443 0.90926 0.93355 0.87763 0.85148 0.92813 0.92837 0.92692 0.88955 0.87288 0.84320 0.83054 0.80657 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 8.37 71.98 0.60 -3.35 16 2 C 0.12 2.55 1.13 -10.79 -0.01 2.54 16 3 C -0.13 -1.84 8.85 71.98 0.64 -1.20 16 4 C -0.18 -3.58 8.37 71.98 0.60 -2.98 16 5 O -0.37 -9.58 9.94 -55.50 -0.55 -10.13 16 6 C 0.65 19.61 8.06 129.79 1.05 20.65 16 7 O -0.59 -21.18 11.88 19.80 0.24 -20.95 16 8 N -0.70 -19.04 5.56 -590.85 -3.28 -22.32 16 9 C 0.17 5.20 4.98 86.38 0.43 5.63 16 10 C -0.14 -4.25 4.31 29.85 0.13 -4.12 16 11 C 0.52 18.56 7.60 87.66 0.67 19.22 16 12 O -0.58 -23.30 14.87 -3.04 -0.05 -23.35 16 13 N -0.59 -20.33 2.45 -830.50 -2.04 -22.37 16 14 C 0.21 7.61 4.02 85.63 0.34 7.95 16 15 C -0.52 -24.62 9.33 25.60 0.24 -24.38 16 16 H 0.02 1.40 8.06 -2.91 -0.02 1.37 16 17 C 0.02 1.17 5.47 84.65 0.46 1.63 16 18 N -0.94 -52.44 13.96 21.45 0.30 -52.15 16 19 Si 0.93 35.87 27.48 68.60 1.88 37.75 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.30 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.23 -7.78 6.58 99.48 0.65 -7.13 16 23 C 0.16 5.01 5.56 85.63 0.48 5.49 16 24 C -0.15 -5.30 5.48 -19.78 -0.11 -5.41 16 25 C -0.05 -1.57 9.86 22.47 0.22 -1.35 16 26 C -0.18 -5.75 10.11 22.36 0.23 -5.52 16 27 C 0.08 2.71 11.18 84.69 0.95 3.66 16 28 N -0.52 -19.73 10.36 -195.84 -2.03 -21.76 16 29 C 0.10 3.70 10.76 84.67 0.91 4.61 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.65 5.88 -2.38 -0.01 1.64 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.06 1.57 5.88 -2.38 -0.01 1.56 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.42 9.21 8.58 -92.71 -0.80 8.42 16 40 H 0.07 2.31 8.04 -2.38 -0.02 2.29 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 3.45 7.38 -2.39 -0.02 3.43 16 43 H 0.13 2.95 7.82 -2.39 -0.02 2.94 16 44 H 0.05 1.73 6.34 -2.39 -0.02 1.71 16 45 H 0.05 1.80 6.80 -2.39 -0.02 1.78 16 46 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.09 2.72 7.45 -2.38 -0.02 2.70 16 48 H 0.11 2.74 7.81 -2.39 -0.02 2.72 16 49 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 50 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 51 H 0.18 4.54 8.06 -2.91 -0.02 4.52 16 52 H 0.15 5.62 7.41 -2.91 -0.02 5.60 16 Total: -1.00 -69.75 425.81 2.37 -67.38 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: 0.08 Total: 44.82 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 7.82 Total: 23.08 kcal Atomic # 7 Polarization: -111.55 SS G_CDS: -7.05 Total: -118.60 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -0.36 Total: -54.42 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 1.88 Total: 37.75 kcal Total: -69.75 2.37 -67.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069322646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.774 kcal (2) G-P(sol) polarization free energy of solvation -69.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds