Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.53910 * 2 1 4 4 O 1.42093 * 110.54659 * 136.75097 * 2 1 3 5 5 C 1.76203 * 104.44855 * 248.37587 * 2 1 3 6 6 C 1.38353 * 119.85471 * 269.72132 * 5 2 1 7 7 C 1.37962 * 120.14560 * 179.76330 * 6 5 2 8 8 C 1.39575 * 119.84777 * 0.51370 * 7 6 5 9 9 C 1.47851 * 120.13968 * 179.72307 * 8 7 6 10 10 O 1.21552 * 120.00034 * 150.38251 * 9 8 7 11 11 N 1.34777 * 119.99695 * 330.37697 * 9 8 7 12 12 C 1.46500 * 120.00653 * 6.06738 * 11 9 8 13 13 C 1.50696 * 109.47316 * 98.02062 * 12 11 9 14 14 H 1.08005 * 119.99534 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00233 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99833 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00188 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47314 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47332 * 120.00207 * 17 15 13 20 20 H 1.48498 * 109.47313 * 240.00466 * 17 15 13 21 21 C 1.46508 * 119.99712 * 186.06395 * 11 9 8 22 22 C 1.50707 * 109.46768 * 90.00222 * 21 11 9 23 23 C 1.34512 * 125.78966 * 90.00184 * 22 21 11 24 24 C 1.41375 * 106.84136 * 179.97438 * 23 22 21 25 25 C 1.34522 * 106.84246 * 359.97438 * 24 23 22 26 26 O 1.34302 * 108.41774 * 359.73506 * 25 24 23 27 27 C 1.39571 * 119.71776 * 359.74419 * 8 7 6 28 28 C 1.37966 * 119.85078 * 359.97438 * 27 8 7 29 29 H 1.08998 * 109.47256 * 51.62495 * 1 2 3 30 30 H 1.08999 * 109.47121 * 291.61988 * 1 2 3 31 31 H 1.09006 * 109.46739 * 171.62682 * 1 2 3 32 32 H 1.07999 * 119.92424 * 0.02562 * 6 5 2 33 33 H 1.07997 * 120.07267 * 180.22967 * 7 6 5 34 34 H 1.08991 * 109.47045 * 218.03074 * 12 11 9 35 35 H 1.09009 * 109.46517 * 338.02571 * 12 11 9 36 36 H 0.97000 * 120.00155 * 179.97438 * 16 15 13 37 37 H 1.08995 * 109.47251 * 209.99851 * 21 11 9 38 38 H 1.09001 * 109.46783 * 330.00606 * 21 11 9 39 39 H 1.08004 * 126.57661 * 359.96188 * 23 22 21 40 40 H 1.07999 * 126.58011 * 179.97438 * 24 23 22 41 41 H 1.07994 * 125.79139 * 180.02562 * 25 24 23 42 42 H 1.07989 * 120.07782 * 180.02562 * 27 8 7 43 43 H 1.07991 * 119.92614 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 0.9116 5 6 2.2537 -0.6288 -1.5862 6 6 2.4312 -1.9895 -1.7627 7 6 2.7706 -2.4888 -3.0032 8 6 2.9455 -1.6168 -4.0789 9 6 3.3153 -2.1444 -5.4096 10 8 2.9633 -1.5587 -6.4149 11 7 4.0429 -3.2746 -5.5080 12 6 4.3543 -4.0524 -4.3062 13 6 3.3797 -5.1949 -4.1807 14 1 2.6060 -5.3286 -4.9224 15 6 3.4757 -6.0696 -3.1193 16 7 4.4176 -5.9065 -2.2160 17 14 2.2681 -7.4863 -2.9642 18 1 1.3132 -7.4495 -4.1009 19 1 3.0094 -8.7729 -2.9824 20 1 1.5220 -7.3630 -1.6862 21 6 4.5223 -3.7255 -6.8170 22 6 5.8791 -3.1281 -7.0880 23 6 7.0612 -3.6790 -6.7587 24 6 8.0656 -2.7862 -7.1978 25 6 7.4372 -1.7433 -7.7697 26 8 6.1131 -1.9587 -7.7058 27 6 2.7702 -0.2447 -3.8929 28 6 2.4250 0.2410 -2.6485 29 1 -0.3634 0.6380 -0.8056 30 1 -0.3633 0.3786 0.9554 31 1 -0.3633 -1.0168 -0.1497 32 1 2.2995 -2.6627 -0.9285 33 1 2.9053 -3.5515 -3.1404 34 1 5.3679 -4.4459 -4.3807 35 1 4.2771 -3.4109 -3.4283 36 1 4.4850 -6.5217 -1.4690 37 1 4.5966 -4.8129 -6.8218 38 1 3.8234 -3.4055 -7.5898 39 1 7.2137 -4.6223 -6.2553 40 1 9.1327 -2.9165 -7.0940 41 1 7.9163 -0.8814 -8.2101 42 1 2.9036 0.4352 -4.7212 43 1 2.2894 1.3025 -2.5031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069383739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = -28.145562 kcal Electronic energy + Delta-G solvation = -30479.238224 eV Core-core repulsion = 26199.282700 eV Total energy + Delta-G solvation = -4279.955524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.24580 -40.03051 -37.94218 -37.06731 -35.90491 -35.61181 -33.16050 -32.61624 -31.73622 -30.82891 -29.92876 -29.55951 -27.67164 -25.95181 -23.81938 -22.84030 -22.46778 -21.40213 -20.44022 -19.25240 -18.98767 -17.59049 -17.28708 -16.89343 -16.48604 -16.25084 -16.17882 -15.80429 -15.32592 -14.82469 -14.75461 -14.42459 -14.30048 -14.06979 -13.56459 -13.41574 -13.31706 -13.28075 -12.80491 -12.59966 -12.53579 -12.48824 -12.39607 -12.26876 -12.05234 -11.96751 -11.60142 -11.40286 -11.13380 -11.08067 -11.03579 -10.69425 -10.44921 -10.05064 -9.98869 -9.64086 -9.42607 -9.02306 -8.88193 -8.48978 -8.24236 -8.04876 -6.42192 -4.54033 0.04878 0.79244 1.63167 1.95255 2.83887 2.86175 3.04194 3.09185 3.19814 3.22535 3.34821 3.74654 3.82273 4.09055 4.11697 4.17231 4.63803 4.80187 4.88355 4.95812 5.04149 5.11534 5.16245 5.29861 5.33041 5.48901 5.62997 5.67017 5.71801 5.96432 5.98569 6.05805 6.20751 6.21384 6.33382 6.35955 6.45202 6.57137 6.76381 6.77824 6.99315 7.18077 7.25584 7.44760 7.52284 7.74687 8.02822 8.52314 8.69567 9.15150 10.62262 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.003908 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.874542 B = 7162.614233 C = 9550.469340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.500 3.500 3 O -0.943 6.943 4 O -0.935 6.935 5 C -0.647 4.647 6 C -0.037 4.037 7 C -0.116 4.116 8 C -0.078 4.078 9 C 0.554 3.446 10 O -0.554 6.554 11 N -0.582 5.582 12 C 0.204 3.796 13 C -0.553 4.553 14 H 0.069 0.931 15 C 0.070 3.930 16 N -0.875 5.875 17 Si 0.897 3.103 18 H -0.270 1.270 19 H -0.280 1.280 20 H -0.278 1.278 21 C 0.196 3.804 22 C -0.020 4.020 23 C -0.198 4.198 24 C -0.216 4.216 25 C -0.051 4.051 26 O -0.169 6.169 27 C -0.092 4.092 28 C -0.051 4.051 29 H 0.131 0.869 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.213 0.787 34 H 0.039 0.961 35 H 0.069 0.931 36 H 0.271 0.729 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.197 0.803 42 H 0.134 0.866 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 7.877 -0.781 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.680 3.320 3 O -0.940 6.940 4 O -0.932 6.932 5 C -0.734 4.734 6 C -0.056 4.056 7 C -0.133 4.133 8 C -0.081 4.081 9 C 0.343 3.657 10 O -0.434 6.434 11 N -0.311 5.311 12 C 0.085 3.915 13 C -0.591 4.591 14 H 0.087 0.913 15 C -0.136 4.136 16 N -0.511 5.511 17 Si 0.724 3.276 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.204 1.204 21 C 0.073 3.927 22 C -0.071 4.071 23 C -0.218 4.218 24 C -0.236 4.236 25 C -0.119 4.119 26 O -0.064 6.064 27 C -0.111 4.111 28 C -0.070 4.070 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.229 0.771 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.214 0.786 42 H 0.152 0.848 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.712 8.519 -0.585 8.959 hybrid contribution -0.535 -1.196 -0.427 1.378 sum -3.247 7.323 -1.011 8.074 Atomic orbital electron populations 1.30230 1.26129 1.12235 1.11481 1.05092 0.77740 0.74559 0.74594 1.93564 1.77330 1.36791 1.86340 1.93601 1.77078 1.61413 1.61141 1.30534 1.18125 1.03445 1.21331 1.21043 0.93484 0.92542 0.98533 1.23739 0.92559 1.06102 0.90944 1.20317 0.99226 0.94342 0.94180 1.18348 0.78382 0.80599 0.88418 1.90708 1.55436 1.59751 1.37544 1.48144 1.50366 1.23494 1.09111 1.20439 0.97625 0.91198 0.82230 1.21462 1.15745 1.11391 1.10472 0.91267 1.25018 0.95658 0.97631 0.95264 1.69935 1.31432 1.37365 1.12327 0.86433 0.80914 0.81755 0.78503 1.19403 1.20561 1.20403 1.19731 0.87593 0.98828 0.86564 1.23175 0.98174 0.85895 0.99877 1.21690 0.91406 1.02727 1.05995 1.21806 1.00434 0.96021 1.05298 1.23974 0.80669 1.01526 1.05740 1.84092 1.25582 1.35771 1.60973 1.21250 0.98163 0.94369 0.97352 1.20692 0.95939 0.98990 0.91410 0.85036 0.85297 0.84809 0.83816 0.77110 0.94301 0.91406 0.91883 0.86516 0.88912 0.83243 0.83793 0.78631 0.84788 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.69 10.80 101.05 1.09 -3.60 16 2 S 2.50 29.87 5.80 -107.50 -0.62 29.24 16 3 O -0.94 -13.52 17.11 -57.54 -0.98 -14.50 16 4 O -0.94 -14.49 17.10 -57.54 -0.98 -15.48 16 5 C -0.65 -9.49 5.66 -39.49 -0.22 -9.72 16 6 C -0.04 -0.63 9.45 -39.64 -0.37 -1.00 16 7 C -0.12 -2.24 7.49 -39.18 -0.29 -2.54 16 8 C -0.08 -1.50 5.58 -104.97 -0.59 -2.09 16 9 C 0.55 11.59 7.46 -12.33 -0.09 11.50 16 10 O -0.55 -12.38 16.26 5.32 0.09 -12.30 16 11 N -0.58 -11.83 2.45 -177.54 -0.43 -12.26 16 12 C 0.20 4.48 4.64 -5.20 -0.02 4.46 16 13 C -0.55 -12.78 7.47 -34.44 -0.26 -13.04 16 14 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 15 C 0.07 1.67 5.32 -17.82 -0.09 1.57 16 16 N -0.87 -21.81 13.29 55.43 0.74 -21.08 16 17 Si 0.90 18.66 29.54 -169.99 -5.02 13.64 16 18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 C 0.20 3.53 5.99 -5.19 -0.03 3.50 16 22 C -0.02 -0.35 6.90 -35.62 -0.25 -0.59 16 23 C -0.20 -3.26 10.81 -39.71 -0.43 -3.69 16 24 C -0.22 -3.11 10.91 -39.70 -0.43 -3.54 16 25 C -0.05 -0.72 12.09 29.42 0.36 -0.36 16 26 O -0.17 -2.98 10.65 5.70 0.06 -2.92 16 27 C -0.09 -1.53 9.60 -39.18 -0.38 -1.91 16 28 C -0.05 -0.75 9.45 -39.64 -0.37 -1.12 16 29 H 0.13 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.13 0.68 8.14 -51.92 -0.42 0.25 16 31 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.14 2.29 7.55 -52.49 -0.40 1.89 16 33 H 0.21 4.54 2.99 -52.49 -0.16 4.38 16 34 H 0.04 0.91 8.13 -51.93 -0.42 0.48 16 35 H 0.07 1.56 4.09 -51.94 -0.21 1.35 16 36 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 37 H 0.12 1.94 8.07 -51.93 -0.42 1.52 16 38 H 0.09 1.65 7.35 -51.93 -0.38 1.27 16 39 H 0.15 2.35 8.06 -52.48 -0.42 1.93 16 40 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 41 H 0.20 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.13 2.09 7.92 -52.49 -0.42 1.68 16 43 H 0.14 1.63 7.56 -52.49 -0.40 1.23 16 LS Contribution 381.51 15.07 5.75 5.75 Total: -1.00 -32.60 381.51 -8.69 -41.29 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.88 Total: 10.79 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -2.39 Total: -22.18 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.30 Total: -33.34 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.82 Total: -45.20 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 16 Polarization: 29.87 SS G_CDS: -0.62 Total: 29.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.60 -8.69 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069383739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.145 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds