Wall clock time and date at job start Tue Mar 31 2020 05:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42100 * 110.53910 * 2 1 4 4 O 1.42093 * 110.54659 * 136.75097 * 2 1 3 5 5 C 1.76203 * 104.44855 * 248.37587 * 2 1 3 6 6 C 1.38353 * 119.85471 * 269.72132 * 5 2 1 7 7 C 1.37962 * 120.14560 * 179.76330 * 6 5 2 8 8 C 1.39575 * 119.84777 * 0.51370 * 7 6 5 9 9 C 1.47851 * 120.13968 * 179.72307 * 8 7 6 10 10 O 1.21552 * 120.00034 * 150.38251 * 9 8 7 11 11 N 1.34777 * 119.99695 * 330.37697 * 9 8 7 12 12 C 1.46500 * 120.00653 * 6.06738 * 11 9 8 13 13 C 1.50696 * 109.47316 * 98.02062 * 12 11 9 14 14 H 1.08005 * 119.99534 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00233 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99833 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00188 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47314 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47332 * 120.00207 * 17 15 13 20 20 H 1.48498 * 109.47313 * 240.00466 * 17 15 13 21 21 C 1.46508 * 119.99712 * 186.06395 * 11 9 8 22 22 C 1.50707 * 109.46768 * 90.00222 * 21 11 9 23 23 C 1.34512 * 125.78966 * 90.00184 * 22 21 11 24 24 C 1.41375 * 106.84136 * 179.97438 * 23 22 21 25 25 C 1.34522 * 106.84246 * 359.97438 * 24 23 22 26 26 O 1.34302 * 108.41774 * 359.73506 * 25 24 23 27 27 C 1.39571 * 119.71776 * 359.74419 * 8 7 6 28 28 C 1.37966 * 119.85078 * 359.97438 * 27 8 7 29 29 H 1.08998 * 109.47256 * 51.62495 * 1 2 3 30 30 H 1.08999 * 109.47121 * 291.61988 * 1 2 3 31 31 H 1.09006 * 109.46739 * 171.62682 * 1 2 3 32 32 H 1.07999 * 119.92424 * 0.02562 * 6 5 2 33 33 H 1.07997 * 120.07267 * 180.22967 * 7 6 5 34 34 H 1.08991 * 109.47045 * 218.03074 * 12 11 9 35 35 H 1.09009 * 109.46517 * 338.02571 * 12 11 9 36 36 H 0.97000 * 120.00155 * 179.97438 * 16 15 13 37 37 H 1.08995 * 109.47251 * 209.99851 * 21 11 9 38 38 H 1.09001 * 109.46783 * 330.00606 * 21 11 9 39 39 H 1.08004 * 126.57661 * 359.96188 * 23 22 21 40 40 H 1.07999 * 126.58011 * 179.97438 * 24 23 22 41 41 H 1.07994 * 125.79139 * 180.02562 * 25 24 23 42 42 H 1.07989 * 120.07782 * 180.02562 * 27 8 7 43 43 H 1.07991 * 119.92614 * 179.97438 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 0.9116 5 6 2.2537 -0.6288 -1.5862 6 6 2.4312 -1.9895 -1.7627 7 6 2.7706 -2.4888 -3.0032 8 6 2.9455 -1.6168 -4.0789 9 6 3.3153 -2.1444 -5.4096 10 8 2.9633 -1.5587 -6.4149 11 7 4.0429 -3.2746 -5.5080 12 6 4.3543 -4.0524 -4.3062 13 6 3.3797 -5.1949 -4.1807 14 1 2.6060 -5.3286 -4.9224 15 6 3.4757 -6.0696 -3.1193 16 7 4.4176 -5.9065 -2.2160 17 14 2.2681 -7.4863 -2.9642 18 1 1.3132 -7.4495 -4.1009 19 1 3.0094 -8.7729 -2.9824 20 1 1.5220 -7.3630 -1.6862 21 6 4.5223 -3.7255 -6.8170 22 6 5.8791 -3.1281 -7.0880 23 6 7.0612 -3.6790 -6.7587 24 6 8.0656 -2.7862 -7.1978 25 6 7.4372 -1.7433 -7.7697 26 8 6.1131 -1.9587 -7.7058 27 6 2.7702 -0.2447 -3.8929 28 6 2.4250 0.2410 -2.6485 29 1 -0.3634 0.6380 -0.8056 30 1 -0.3633 0.3786 0.9554 31 1 -0.3633 -1.0168 -0.1497 32 1 2.2995 -2.6627 -0.9285 33 1 2.9053 -3.5515 -3.1404 34 1 5.3679 -4.4459 -4.3807 35 1 4.2771 -3.4109 -3.4283 36 1 4.4850 -6.5217 -1.4690 37 1 4.5966 -4.8129 -6.8218 38 1 3.8234 -3.4055 -7.5898 39 1 7.2137 -4.6223 -6.2553 40 1 9.1327 -2.9165 -7.0940 41 1 7.9163 -0.8814 -8.2101 42 1 2.9036 0.4352 -4.7212 43 1 2.2894 1.3025 -2.5031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069383739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:39 Heat of formation + Delta-G solvation = -49.508934 kcal Electronic energy + Delta-G solvation = -30480.164610 eV Core-core repulsion = 26199.282700 eV Total energy + Delta-G solvation = -4280.881910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.51016 -41.54265 -39.36211 -38.12446 -37.27973 -36.96248 -34.86609 -33.94034 -33.12356 -32.16345 -31.23918 -30.23632 -29.39911 -27.32591 -25.43079 -24.35261 -23.81334 -22.65151 -21.73939 -20.71099 -20.05513 -18.88666 -18.71374 -18.34744 -18.05734 -17.69424 -17.12552 -16.94888 -16.66384 -16.46386 -16.24422 -15.78751 -15.64672 -15.43291 -14.93586 -14.70424 -14.38103 -14.23089 -13.92052 -13.89944 -13.89558 -13.76479 -13.73237 -13.56532 -13.16362 -13.12099 -13.02870 -12.94765 -12.70597 -12.55686 -12.20175 -12.12088 -11.82453 -11.77121 -11.57045 -11.01576 -10.86032 -10.70915 -10.33974 -9.92554 -9.75764 -9.46049 -8.26077 -6.42993 -0.87642 -0.52847 0.29888 0.67543 1.42080 1.46549 1.52114 1.56601 1.63952 1.89471 2.08768 2.27608 2.38921 2.56555 3.02792 3.05453 3.20542 3.46008 3.77687 3.81797 3.94232 4.08408 4.12374 4.15099 4.18933 4.31312 4.33092 4.47167 4.52526 4.68106 4.72651 4.87996 4.93895 4.97551 4.99699 5.01552 5.15425 5.16237 5.20203 5.36515 5.51916 5.59248 5.66933 5.82163 5.92767 6.18616 6.37023 6.70145 7.03342 7.29382 8.78622 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.003908 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.874542 B = 7162.614233 C = 9550.469340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.621 4.621 2 S 2.509 3.491 3 O -0.967 6.967 4 O -0.977 6.977 5 C -0.640 4.640 6 C -0.048 4.048 7 C -0.135 4.135 8 C -0.103 4.103 9 C 0.548 3.452 10 O -0.576 6.576 11 N -0.583 5.583 12 C 0.219 3.781 13 C -0.551 4.551 14 H 0.062 0.938 15 C 0.034 3.966 16 N -0.905 5.905 17 Si 0.954 3.046 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.274 1.274 21 C 0.195 3.805 22 C -0.048 4.048 23 C -0.202 4.202 24 C -0.224 4.224 25 C -0.042 4.042 26 O -0.192 6.192 27 C -0.095 4.095 28 C -0.042 4.042 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.189 0.811 34 H 0.019 0.981 35 H 0.062 0.938 36 H 0.272 0.728 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.174 0.826 41 H 0.241 0.759 42 H 0.143 0.857 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 9.490 -0.098 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.775 4.775 2 S 2.691 3.309 3 O -0.965 6.965 4 O -0.974 6.974 5 C -0.725 4.725 6 C -0.067 4.067 7 C -0.153 4.153 8 C -0.106 4.106 9 C 0.338 3.662 10 O -0.459 6.459 11 N -0.312 5.312 12 C 0.100 3.900 13 C -0.589 4.589 14 H 0.080 0.920 15 C -0.169 4.169 16 N -0.542 5.542 17 Si 0.779 3.221 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.199 1.199 21 C 0.073 3.927 22 C -0.099 4.099 23 C -0.222 4.222 24 C -0.243 4.243 25 C -0.109 4.109 26 O -0.088 6.088 27 C -0.114 4.114 28 C -0.060 4.060 29 H 0.177 0.823 30 H 0.178 0.822 31 H 0.168 0.832 32 H 0.165 0.835 33 H 0.205 0.795 34 H 0.037 0.963 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.167 0.833 40 H 0.191 0.809 41 H 0.257 0.743 42 H 0.161 0.839 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.839 10.106 0.054 10.811 hybrid contribution -0.191 -1.576 -0.604 1.698 sum -4.030 8.530 -0.550 9.450 Atomic orbital electron populations 1.30012 1.18644 1.14341 1.14491 1.04953 0.80379 0.73031 0.72562 1.93530 1.79824 1.37182 1.85930 1.93553 1.79905 1.62394 1.61535 1.31054 1.16107 1.02297 1.23005 1.21093 0.93927 0.94018 0.97618 1.23441 0.94503 1.05070 0.92265 1.20316 1.01353 0.95627 0.93318 1.18693 0.78033 0.80438 0.89031 1.90669 1.56469 1.60327 1.38384 1.48164 1.50292 1.23337 1.09402 1.20142 0.96184 0.90917 0.82784 1.21514 1.15516 1.11679 1.10209 0.91991 1.25617 0.96881 0.99518 0.94889 1.70021 1.32922 1.38320 1.12905 0.85560 0.79070 0.79043 0.78444 1.19300 1.20526 1.19905 1.19766 0.88242 0.99293 0.85439 1.23001 0.98063 0.86841 1.01981 1.21903 0.91918 1.03020 1.05391 1.22163 1.01552 0.95472 1.05114 1.24899 0.79303 1.02448 1.04251 1.84071 1.27608 1.35751 1.61381 1.21458 0.97882 0.93326 0.98772 1.21113 0.93984 1.00680 0.90243 0.82326 0.82156 0.83229 0.83483 0.79514 0.96296 0.92133 0.91838 0.85939 0.89243 0.83318 0.80874 0.74328 0.83891 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.85 10.80 113.37 1.22 -4.62 16 2 S 2.51 54.18 5.80 -56.49 -0.33 53.85 16 3 O -0.97 -25.41 17.11 -127.65 -2.18 -27.59 16 4 O -0.98 -29.38 17.10 -127.65 -2.18 -31.56 16 5 C -0.64 -17.97 5.66 22.33 0.13 -17.84 16 6 C -0.05 -1.64 9.45 22.23 0.21 -1.43 16 7 C -0.13 -5.43 7.49 22.53 0.17 -5.27 16 8 C -0.10 -4.12 5.58 -20.09 -0.11 -4.23 16 9 C 0.55 23.96 7.46 86.79 0.65 24.61 16 10 O -0.58 -26.67 16.26 -3.88 -0.06 -26.73 16 11 N -0.58 -25.01 2.45 -833.89 -2.04 -27.05 16 12 C 0.22 10.20 4.64 85.63 0.40 10.60 16 13 C -0.55 -26.55 7.47 25.60 0.19 -26.35 16 14 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 15 C 0.03 1.65 5.32 84.65 0.45 2.11 16 16 N -0.90 -46.46 13.29 21.45 0.28 -46.18 16 17 Si 0.95 38.78 29.54 68.60 2.03 40.81 16 18 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 19 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 C 0.20 7.44 5.99 85.63 0.51 7.95 16 22 C -0.05 -1.76 6.90 24.83 0.17 -1.58 16 23 C -0.20 -6.76 10.81 22.19 0.24 -6.52 16 24 C -0.22 -6.16 10.91 22.19 0.24 -5.92 16 25 C -0.04 -1.11 12.09 66.97 0.81 -0.30 16 26 O -0.19 -6.81 10.65 -2.52 -0.03 -6.84 16 27 C -0.09 -3.14 9.60 22.53 0.22 -2.93 16 28 C -0.04 -1.14 9.45 22.23 0.21 -0.93 16 29 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.15 4.81 7.55 -2.91 -0.02 4.79 16 33 H 0.19 8.49 2.99 -2.91 -0.01 8.49 16 34 H 0.02 0.94 8.13 -2.39 -0.02 0.92 16 35 H 0.06 2.96 4.09 -2.40 -0.01 2.95 16 36 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 37 H 0.12 4.35 8.07 -2.39 -0.02 4.33 16 38 H 0.09 3.39 7.35 -2.39 -0.02 3.37 16 39 H 0.15 4.87 8.06 -2.91 -0.02 4.84 16 40 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 41 H 0.24 3.91 8.06 -2.91 -0.02 3.88 16 42 H 0.14 4.39 7.92 -2.92 -0.02 4.37 16 43 H 0.18 3.50 7.56 -2.92 -0.02 3.48 16 Total: -1.00 -73.85 381.51 2.25 -71.60 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 1.06 Total: 32.37 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 5.71 Total: -32.68 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.76 Total: -73.23 kcal Atomic # 8 Polarization: -88.27 SS G_CDS: -4.46 Total: -92.73 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 16 Polarization: 54.18 SS G_CDS: -0.33 Total: 53.85 kcal Total: -73.85 2.25 -71.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069383739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.092 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds