Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46902 * 2 1 4 4 C 1.37807 * 120.03854 * 265.02197 * 3 2 1 5 5 C 1.38708 * 120.63502 * 179.97438 * 4 3 2 6 6 C 1.37797 * 120.30220 * 0.02562 * 5 4 3 7 7 C 1.39240 * 119.67039 * 359.65231 * 6 5 4 8 8 C 1.47442 * 134.01074 * 179.55169 * 7 6 5 9 9 C 1.46911 * 126.76748 * 0.83340 * 8 7 6 10 10 O 1.21670 * 120.00267 * 330.54513 * 9 8 7 11 11 N 1.34779 * 119.99994 * 150.54606 * 9 8 7 12 12 C 1.46499 * 120.00234 * 6.74724 * 11 9 8 13 13 C 1.50695 * 109.47254 * 97.64756 * 12 11 9 14 14 H 1.08006 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99889 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00131 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47408 * 59.99415 * 17 15 13 19 19 H 1.48499 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47017 * 299.99907 * 17 15 13 21 21 C 1.46499 * 119.99845 * 186.74717 * 11 9 8 22 22 C 1.50701 * 109.47401 * 89.99977 * 21 11 9 23 23 C 1.38677 * 120.42060 * 269.72651 * 22 21 11 24 24 C 1.38626 * 118.42040 * 179.78365 * 23 22 21 25 25 C 1.38230 * 119.15934 * 0.50136 * 24 23 22 26 26 N 1.31849 * 120.76698 * 359.73567 * 25 24 23 27 27 C 1.31891 * 121.72250 * 359.97438 * 26 25 24 28 28 C 1.36373 * 106.46308 * 180.56524 * 8 7 6 29 29 N 1.35468 * 109.77691 * 0.26737 * 28 8 7 30 30 H 0.97003 * 124.78083 * 179.97438 * 29 28 8 31 31 C 1.37961 * 110.43266 * 359.97438 * 29 28 8 32 32 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46662 * 299.99588 * 1 2 3 34 34 H 1.08989 * 109.47380 * 59.99556 * 1 2 3 35 35 H 1.09005 * 109.46662 * 240.00411 * 2 1 3 36 36 H 1.08989 * 109.47380 * 120.00444 * 2 1 3 37 37 H 1.07999 * 119.68333 * 0.02562 * 4 3 2 38 38 H 1.07997 * 119.85119 * 180.02562 * 5 4 3 39 39 H 1.07999 * 120.16424 * 179.97438 * 6 5 4 40 40 H 1.08997 * 109.46990 * 217.65335 * 12 11 9 41 41 H 1.09000 * 109.46737 * 337.65098 * 12 11 9 42 42 H 0.97001 * 119.99679 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.46790 * 210.00011 * 21 11 9 44 44 H 1.08996 * 109.47097 * 330.00031 * 21 11 9 45 45 H 1.07998 * 120.78524 * 0.02562 * 23 22 21 46 46 H 1.08000 * 120.41734 * 180.21705 * 24 23 22 47 47 H 1.07996 * 119.61505 * 179.75060 * 25 24 23 48 48 H 1.08005 * 119.61226 * 180.02562 * 27 26 25 49 49 H 1.08005 * 125.10555 * 180.24410 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0367 -1.1885 5 6 2.8228 3.3442 -1.2029 6 6 2.9619 4.0455 -0.0250 7 6 2.6283 3.4378 1.1826 8 6 2.6585 3.8727 2.5911 9 6 3.0760 5.1874 3.0967 10 8 3.9074 5.8365 2.4902 11 7 2.5379 5.6745 4.2324 12 6 1.6502 4.8354 5.0410 13 6 2.4339 4.2171 6.1699 14 1 3.4879 4.4284 6.2748 15 6 1.8055 3.3817 7.0689 16 7 0.5222 3.1239 6.9409 17 14 2.7769 2.6158 8.4687 18 1 3.3515 3.6898 9.3181 19 1 1.8770 1.7652 9.2883 20 1 3.8743 1.7841 7.9126 21 6 2.8409 7.0431 4.6581 22 6 1.8257 7.9887 4.0697 23 6 2.0493 8.5796 2.8352 24 6 1.0857 9.4393 2.3310 25 6 -0.0530 9.6854 3.0750 26 7 -0.2300 9.1094 4.2478 27 6 0.6626 8.2819 4.7558 28 6 2.2169 2.8160 3.3314 29 7 1.9248 1.7749 2.5154 30 1 1.5934 0.9136 2.8143 31 6 2.1650 2.1121 1.1994 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5138 -0.8898 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8898 37 1 2.2543 1.4965 -2.1177 38 1 3.0754 3.8146 -2.1416 39 1 3.3230 5.0633 -0.0388 40 1 0.8452 5.4464 5.4494 41 1 1.2278 4.0473 4.4177 42 1 0.0801 2.5364 7.5736 43 1 2.8043 7.1017 5.7460 44 1 3.8372 7.3189 4.3127 45 1 2.9508 8.3718 2.2781 46 1 1.2251 9.9143 1.3712 47 1 -0.8066 10.3570 2.6911 48 1 0.4827 7.8287 5.7195 49 1 2.1157 2.8101 4.4067 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069416406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = 58.200305 kcal Electronic energy + Delta-G solvation = -32573.229719 eV Core-core repulsion = 28465.533421 eV Total energy + Delta-G solvation = -4107.696298 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.18151 -39.94832 -38.56108 -36.93954 -35.20500 -34.15202 -33.21331 -32.16337 -31.42097 -30.39758 -28.97266 -28.51508 -27.54101 -25.94698 -23.88647 -23.45316 -23.07233 -22.36786 -21.52940 -21.44929 -20.73052 -18.12399 -17.37545 -16.95296 -16.54753 -16.35557 -16.00431 -15.52751 -15.28145 -15.04978 -14.94401 -14.53901 -14.45016 -14.30887 -14.01752 -13.67692 -13.40703 -13.30718 -12.96179 -12.73276 -12.68107 -12.60250 -12.50080 -12.30501 -11.93049 -11.74217 -11.48994 -11.26459 -11.23010 -11.13381 -11.05542 -10.97582 -10.56904 -10.53303 -10.32850 -9.92463 -9.54777 -9.26111 -9.19571 -9.12972 -8.76598 -8.65038 -7.92950 -7.79369 -7.28541 -6.35299 -4.45222 1.35163 1.35536 1.57305 1.85556 2.59957 3.13660 3.20048 3.23311 3.41884 3.77170 3.92674 4.16692 4.24698 4.35517 4.71855 4.77084 4.90749 4.95244 5.07419 5.14400 5.22285 5.27975 5.29916 5.30761 5.35499 5.41687 5.49086 5.56070 5.65872 5.68365 5.79819 5.88233 5.94377 6.02696 6.07780 6.12512 6.20227 6.23594 6.27394 6.35326 6.39948 6.61519 6.68098 6.74916 6.84611 6.97733 6.98796 7.04652 7.10992 7.41724 7.46996 7.60940 7.80125 7.88308 8.23420 8.31040 8.66660 9.05469 9.24379 10.68832 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.006366 B = 0.004428 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4397.374404 B = 6321.192707 C = 9391.273015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.092 4.092 4 C -0.111 4.111 5 C -0.146 4.146 6 C -0.071 4.071 7 C -0.056 4.056 8 C -0.238 4.238 9 C 0.594 3.406 10 O -0.573 6.573 11 N -0.589 5.589 12 C 0.218 3.782 13 C -0.544 4.544 14 H 0.066 0.934 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.163 3.837 22 C -0.143 4.143 23 C -0.057 4.057 24 C -0.181 4.181 25 C 0.088 3.912 26 N -0.490 5.490 27 C 0.115 3.885 28 C 0.124 3.876 29 N -0.584 5.584 30 H 0.416 0.584 31 C 0.085 3.915 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.034 0.966 41 H 0.056 0.944 42 H 0.268 0.732 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.137 0.863 46 H 0.129 0.871 47 H 0.149 0.851 48 H 0.158 0.842 49 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -0.522 -11.231 11.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.094 4.094 4 C -0.130 4.130 5 C -0.165 4.165 6 C -0.089 4.089 7 C -0.061 4.061 8 C -0.247 4.247 9 C 0.385 3.615 10 O -0.455 6.455 11 N -0.319 5.319 12 C 0.098 3.902 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.138 4.138 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.039 3.961 22 C -0.147 4.147 23 C -0.084 4.084 24 C -0.201 4.201 25 C -0.069 4.069 26 N -0.198 5.198 27 C -0.043 4.043 28 C -0.007 4.007 29 N -0.185 5.185 30 H 0.253 0.747 31 C -0.020 4.020 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.166 0.834 48 H 0.175 0.825 49 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -0.675 -0.221 -10.905 10.928 hybrid contribution 0.914 -1.053 0.583 1.512 sum 0.240 -1.274 -10.323 10.404 Atomic orbital electron populations 1.21766 0.94899 1.01398 1.02427 1.20433 0.96029 0.92908 1.02424 1.18772 1.04406 0.95923 0.90324 1.20564 1.01186 0.95222 0.96054 1.20813 1.03353 0.94858 0.97494 1.20547 0.98126 0.99908 0.90352 1.18790 1.02157 0.92628 0.92522 1.19917 1.16984 0.96089 0.91750 1.17209 0.80140 0.84296 0.79877 1.90644 1.33815 1.61424 1.59592 1.47976 1.48231 1.12476 1.23179 1.19956 0.89298 0.90781 0.90184 1.21538 0.96657 1.28767 1.11302 0.91610 1.24983 0.94893 0.96262 0.97626 1.69932 1.09011 1.36220 1.37202 0.86584 0.79790 0.79407 0.81992 1.19872 1.21102 1.20004 1.20094 0.96064 0.80376 0.99599 1.21460 0.98309 0.98728 0.96162 1.21655 0.99033 0.93281 0.94394 1.22093 0.95898 1.00707 1.01379 1.22676 0.96080 0.97414 0.90705 1.67698 1.30826 1.08471 1.12826 1.22807 0.88852 0.92930 0.99674 1.23924 0.92640 0.85343 0.98786 1.41768 1.57107 1.15002 1.04621 0.74737 1.18086 1.04081 0.94905 0.84924 0.92588 0.92689 0.92389 0.90950 0.91861 0.86304 0.86362 0.85758 0.94771 0.92703 0.92179 0.88975 0.89643 0.84545 0.85305 0.83367 0.82511 0.76135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.90 37.16 0.37 -1.11 16 2 C -0.08 -0.85 6.07 -27.88 -0.17 -1.02 16 3 C -0.09 -1.26 5.15 -104.47 -0.54 -1.80 16 4 C -0.11 -1.44 9.64 -39.57 -0.38 -1.83 16 5 C -0.15 -2.04 10.03 -39.57 -0.40 -2.44 16 6 C -0.07 -1.20 10.09 -39.37 -0.40 -1.60 16 7 C -0.06 -1.05 6.31 -104.95 -0.66 -1.71 16 8 C -0.24 -4.83 5.85 -103.31 -0.60 -5.44 16 9 C 0.59 12.72 7.61 -12.75 -0.10 12.62 16 10 O -0.57 -12.90 16.56 5.22 0.09 -12.81 16 11 N -0.59 -12.03 2.45 -177.90 -0.44 -12.46 16 12 C 0.22 4.79 4.70 -5.20 -0.02 4.77 16 13 C -0.54 -12.73 7.90 -34.44 -0.27 -13.01 16 14 H 0.07 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.07 1.58 5.36 -17.82 -0.10 1.48 16 16 N -0.89 -21.99 13.29 55.43 0.74 -21.25 16 17 Si 0.90 18.92 29.54 -169.99 -5.02 13.90 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 19 H -0.29 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 21 C 0.16 2.91 5.62 -5.19 -0.03 2.88 16 22 C -0.14 -2.42 5.48 -104.48 -0.57 -2.99 16 23 C -0.06 -0.90 9.86 -39.28 -0.39 -1.28 16 24 C -0.18 -2.47 10.11 -39.44 -0.40 -2.86 16 25 C 0.09 1.25 11.18 -17.55 -0.20 1.06 16 26 N -0.49 -8.20 10.36 -13.25 -0.14 -8.33 16 27 C 0.11 1.94 10.86 -17.55 -0.19 1.75 16 28 C 0.12 2.34 9.50 -16.62 -0.16 2.18 16 29 N -0.58 -9.23 5.99 -10.48 -0.06 -9.30 16 30 H 0.42 5.31 8.96 -40.82 -0.37 4.94 16 31 C 0.09 1.40 6.94 -83.97 -0.58 0.82 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.57 8.14 -51.94 -0.42 0.15 16 35 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 36 H 0.06 0.64 8.12 -51.94 -0.42 0.22 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.12 2.14 8.01 -52.49 -0.42 1.72 16 40 H 0.03 0.80 8.13 -51.93 -0.42 0.38 16 41 H 0.06 1.25 4.10 -51.93 -0.21 1.03 16 42 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 43 H 0.09 1.59 8.02 -51.93 -0.42 1.17 16 44 H 0.09 1.52 7.29 -51.93 -0.38 1.14 16 45 H 0.14 2.14 8.05 -52.49 -0.42 1.72 16 46 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 48 H 0.16 2.60 8.06 -52.48 -0.42 2.17 16 49 H 0.22 4.54 4.41 -52.48 -0.23 4.31 16 LS Contribution 411.64 15.07 6.20 6.20 Total: -1.00 -28.47 411.64 -11.05 -39.52 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.64 Total: 14.05 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -5.79 Total: -9.51 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.10 Total: -51.35 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -28.47 -11.05 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.720 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds