Wall clock time and date at job start Tue Mar 31 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46902 * 2 1 4 4 C 1.37807 * 120.03854 * 265.02197 * 3 2 1 5 5 C 1.38708 * 120.63502 * 179.97438 * 4 3 2 6 6 C 1.37797 * 120.30220 * 0.02562 * 5 4 3 7 7 C 1.39240 * 119.67039 * 359.65231 * 6 5 4 8 8 C 1.47442 * 134.01074 * 179.55169 * 7 6 5 9 9 C 1.46911 * 126.76748 * 0.83340 * 8 7 6 10 10 O 1.21670 * 120.00267 * 330.54513 * 9 8 7 11 11 N 1.34779 * 119.99994 * 150.54606 * 9 8 7 12 12 C 1.46499 * 120.00234 * 6.74724 * 11 9 8 13 13 C 1.50695 * 109.47254 * 97.64756 * 12 11 9 14 14 H 1.08006 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99889 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00131 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47408 * 59.99415 * 17 15 13 19 19 H 1.48499 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47017 * 299.99907 * 17 15 13 21 21 C 1.46499 * 119.99845 * 186.74717 * 11 9 8 22 22 C 1.50701 * 109.47401 * 89.99977 * 21 11 9 23 23 C 1.38677 * 120.42060 * 269.72651 * 22 21 11 24 24 C 1.38626 * 118.42040 * 179.78365 * 23 22 21 25 25 C 1.38230 * 119.15934 * 0.50136 * 24 23 22 26 26 N 1.31849 * 120.76698 * 359.73567 * 25 24 23 27 27 C 1.31891 * 121.72250 * 359.97438 * 26 25 24 28 28 C 1.36373 * 106.46308 * 180.56524 * 8 7 6 29 29 N 1.35468 * 109.77691 * 0.26737 * 28 8 7 30 30 H 0.97003 * 124.78083 * 179.97438 * 29 28 8 31 31 C 1.37961 * 110.43266 * 359.97438 * 29 28 8 32 32 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46662 * 299.99588 * 1 2 3 34 34 H 1.08989 * 109.47380 * 59.99556 * 1 2 3 35 35 H 1.09005 * 109.46662 * 240.00411 * 2 1 3 36 36 H 1.08989 * 109.47380 * 120.00444 * 2 1 3 37 37 H 1.07999 * 119.68333 * 0.02562 * 4 3 2 38 38 H 1.07997 * 119.85119 * 180.02562 * 5 4 3 39 39 H 1.07999 * 120.16424 * 179.97438 * 6 5 4 40 40 H 1.08997 * 109.46990 * 217.65335 * 12 11 9 41 41 H 1.09000 * 109.46737 * 337.65098 * 12 11 9 42 42 H 0.97001 * 119.99679 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.46790 * 210.00011 * 21 11 9 44 44 H 1.08996 * 109.47097 * 330.00031 * 21 11 9 45 45 H 1.07998 * 120.78524 * 0.02562 * 23 22 21 46 46 H 1.08000 * 120.41734 * 180.21705 * 24 23 22 47 47 H 1.07996 * 119.61505 * 179.75060 * 25 24 23 48 48 H 1.08005 * 119.61226 * 180.02562 * 27 26 25 49 49 H 1.08005 * 125.10555 * 180.24410 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3599 2.0367 -1.1885 5 6 2.8228 3.3442 -1.2029 6 6 2.9619 4.0455 -0.0250 7 6 2.6283 3.4378 1.1826 8 6 2.6585 3.8727 2.5911 9 6 3.0760 5.1874 3.0967 10 8 3.9074 5.8365 2.4902 11 7 2.5379 5.6745 4.2324 12 6 1.6502 4.8354 5.0410 13 6 2.4339 4.2171 6.1699 14 1 3.4879 4.4284 6.2748 15 6 1.8055 3.3817 7.0689 16 7 0.5222 3.1239 6.9409 17 14 2.7769 2.6158 8.4687 18 1 3.3515 3.6898 9.3181 19 1 1.8770 1.7652 9.2883 20 1 3.8743 1.7841 7.9126 21 6 2.8409 7.0431 4.6581 22 6 1.8257 7.9887 4.0697 23 6 2.0493 8.5796 2.8352 24 6 1.0857 9.4393 2.3310 25 6 -0.0530 9.6854 3.0750 26 7 -0.2300 9.1094 4.2478 27 6 0.6626 8.2819 4.7558 28 6 2.2169 2.8160 3.3314 29 7 1.9248 1.7749 2.5154 30 1 1.5934 0.9136 2.8143 31 6 2.1650 2.1121 1.1994 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5138 -0.8898 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8898 37 1 2.2543 1.4965 -2.1177 38 1 3.0754 3.8146 -2.1416 39 1 3.3230 5.0633 -0.0388 40 1 0.8452 5.4464 5.4494 41 1 1.2278 4.0473 4.4177 42 1 0.0801 2.5364 7.5736 43 1 2.8043 7.1017 5.7460 44 1 3.8372 7.3189 4.3127 45 1 2.9508 8.3718 2.2781 46 1 1.2251 9.9143 1.3712 47 1 -0.8066 10.3570 2.6911 48 1 0.4827 7.8287 5.7195 49 1 2.1157 2.8101 4.4067 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069416406.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:44 Heat of formation + Delta-G solvation = 45.063876 kcal Electronic energy + Delta-G solvation = -32573.799357 eV Core-core repulsion = 28465.533421 eV Total energy + Delta-G solvation = -4108.265936 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.50238 -41.24276 -40.08391 -38.15268 -36.85537 -35.19656 -34.86956 -33.63638 -32.70079 -31.63303 -30.25129 -29.66078 -29.27342 -27.38665 -25.13425 -24.87417 -24.43150 -23.72871 -22.74664 -22.68403 -22.04594 -19.58910 -18.76427 -18.56479 -17.94191 -17.80863 -17.31863 -16.93554 -16.65204 -16.49997 -16.29081 -16.00432 -15.71133 -15.51706 -15.24412 -14.84530 -14.72061 -14.47832 -14.30206 -14.22808 -14.05971 -13.98311 -13.84603 -13.56138 -13.21534 -12.93345 -12.83586 -12.79030 -12.59957 -12.49671 -12.40677 -12.24656 -12.03568 -11.82546 -11.72150 -11.64025 -10.95807 -10.72853 -10.62775 -10.47124 -10.40039 -9.96781 -9.47644 -9.17017 -8.59821 -8.21211 -6.37007 0.09337 0.12238 0.32363 0.65445 1.14310 1.43069 1.46484 1.52514 2.11598 2.28923 2.34615 2.55226 2.95766 2.98284 3.07412 3.53873 3.72750 3.79486 3.88983 3.93431 4.02556 4.06879 4.09517 4.12063 4.24687 4.35517 4.41695 4.49878 4.54744 4.64347 4.68146 4.72248 4.76999 4.83450 4.87141 4.87845 4.92587 5.05669 5.12590 5.18252 5.19818 5.24229 5.38010 5.38492 5.61290 5.63083 5.66146 5.72367 5.74260 5.77238 5.84684 6.02913 6.19630 6.57190 6.58030 6.81750 7.00320 7.31010 7.43862 8.82103 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.006366 B = 0.004428 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4397.374404 B = 6321.192707 C = 9391.273015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.088 4.088 4 C -0.105 4.105 5 C -0.132 4.132 6 C -0.100 4.100 7 C -0.088 4.088 8 C -0.269 4.269 9 C 0.587 3.413 10 O -0.593 6.593 11 N -0.590 5.590 12 C 0.233 3.767 13 C -0.547 4.547 14 H 0.055 0.945 15 C 0.034 3.966 16 N -0.910 5.910 17 Si 0.949 3.051 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.163 3.837 22 C -0.154 4.154 23 C -0.067 4.067 24 C -0.169 4.169 25 C 0.089 3.911 26 N -0.509 5.509 27 C 0.101 3.899 28 C 0.123 3.877 29 N -0.570 5.570 30 H 0.429 0.571 31 C 0.076 3.924 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.160 0.840 38 H 0.149 0.851 39 H 0.109 0.891 40 H 0.015 0.985 41 H 0.051 0.949 42 H 0.270 0.730 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.166 0.834 47 H 0.187 0.813 48 H 0.150 0.850 49 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.616 -1.707 -13.812 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.091 4.091 4 C -0.124 4.124 5 C -0.151 4.151 6 C -0.119 4.119 7 C -0.092 4.092 8 C -0.279 4.279 9 C 0.379 3.621 10 O -0.476 6.476 11 N -0.318 5.318 12 C 0.113 3.887 13 C -0.585 4.585 14 H 0.073 0.927 15 C -0.168 4.168 16 N -0.548 5.548 17 Si 0.775 3.225 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.197 1.197 21 C 0.040 3.960 22 C -0.158 4.158 23 C -0.094 4.094 24 C -0.188 4.188 25 C -0.068 4.068 26 N -0.218 5.218 27 C -0.055 4.055 28 C -0.010 4.010 29 N -0.172 5.172 30 H 0.269 0.731 31 C -0.029 4.029 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.085 0.915 37 H 0.177 0.823 38 H 0.167 0.833 39 H 0.127 0.873 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.150 0.850 46 H 0.184 0.816 47 H 0.204 0.796 48 H 0.167 0.833 49 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.170 -1.421 -13.482 13.607 hybrid contribution 1.043 -0.661 1.225 1.740 sum -0.126 -2.082 -12.257 12.434 Atomic orbital electron populations 1.21749 0.94388 1.02487 1.01640 1.20522 0.96301 0.90826 1.03944 1.19251 1.03052 0.97406 0.89369 1.21070 0.99251 0.94798 0.97290 1.21195 1.01313 0.95189 0.97420 1.20610 1.00144 0.99905 0.91196 1.19032 1.03878 0.94097 0.92231 1.20054 1.18569 0.95949 0.93378 1.17501 0.79937 0.84856 0.79807 1.90601 1.34726 1.62190 1.60130 1.47979 1.47743 1.13227 1.22889 1.19654 0.88839 0.90342 0.89863 1.21575 0.96139 1.28952 1.11834 0.92676 1.25516 0.95509 0.96456 0.99272 1.70010 1.10051 1.36770 1.37938 0.85737 0.78662 0.78547 0.79549 1.20074 1.20717 1.19709 1.20131 0.96503 0.79691 0.99677 1.21291 0.98166 0.99250 0.97047 1.21754 0.99712 0.93955 0.93966 1.22461 0.94625 0.99262 1.02438 1.23342 0.96936 0.96892 0.89626 1.67713 1.30901 1.08909 1.14310 1.22710 0.89257 0.93759 0.99803 1.23476 0.93188 0.86195 0.98134 1.41625 1.56354 1.14829 1.04380 0.73139 1.18361 1.04412 0.94473 0.85638 0.90599 0.94551 0.92126 0.88350 0.91489 0.82258 0.83311 0.87289 0.96707 0.93186 0.92076 0.89026 0.89869 0.84968 0.81599 0.79589 0.83313 0.77912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.90 71.98 0.71 -1.76 16 2 C -0.08 -1.39 6.07 29.85 0.18 -1.21 16 3 C -0.09 -2.20 5.15 -19.77 -0.10 -2.31 16 4 C -0.11 -2.34 9.64 22.28 0.21 -2.13 16 5 C -0.13 -3.39 10.03 22.28 0.22 -3.17 16 6 C -0.10 -3.42 10.09 22.41 0.23 -3.19 16 7 C -0.09 -3.37 6.31 -20.08 -0.13 -3.50 16 8 C -0.27 -11.54 5.85 -19.02 -0.11 -11.65 16 9 C 0.59 26.70 7.61 86.51 0.66 27.36 16 10 O -0.59 -28.23 16.56 -4.25 -0.07 -28.30 16 11 N -0.59 -25.67 2.45 -834.97 -2.04 -27.71 16 12 C 0.23 10.92 4.70 85.63 0.40 11.32 16 13 C -0.55 -26.70 7.90 25.60 0.20 -26.50 16 14 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 15 C 0.03 1.67 5.36 84.65 0.45 2.13 16 16 N -0.91 -46.19 13.29 21.45 0.28 -45.91 16 17 Si 0.95 39.32 29.54 68.60 2.03 41.35 16 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 C 0.16 6.26 5.62 85.63 0.48 6.74 16 22 C -0.15 -5.45 5.48 -19.77 -0.11 -5.56 16 23 C -0.07 -2.14 9.86 22.47 0.22 -1.92 16 24 C -0.17 -4.31 10.11 22.36 0.23 -4.09 16 25 C 0.09 2.37 11.18 84.69 0.95 3.32 16 26 N -0.51 -17.03 10.36 -195.84 -2.03 -19.06 16 27 C 0.10 3.59 10.86 84.67 0.92 4.51 16 28 C 0.12 4.88 9.50 83.70 0.79 5.68 16 29 N -0.57 -18.26 5.99 -187.08 -1.12 -19.38 16 30 H 0.43 10.90 8.96 -92.71 -0.83 10.07 16 31 C 0.08 2.47 6.94 38.91 0.27 2.74 16 32 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.29 8.05 -2.38 -0.02 1.27 16 36 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 37 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 39 H 0.11 3.94 8.01 -2.91 -0.02 3.92 16 40 H 0.01 0.75 8.13 -2.39 -0.02 0.73 16 41 H 0.05 2.42 4.10 -2.39 -0.01 2.41 16 42 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 43 H 0.09 3.42 8.02 -2.39 -0.02 3.40 16 44 H 0.08 3.17 7.29 -2.39 -0.02 3.15 16 45 H 0.13 4.29 8.05 -2.91 -0.02 4.26 16 46 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 47 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 48 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 49 H 0.20 8.85 4.41 -2.91 -0.01 8.83 16 Total: -1.00 -64.25 411.64 3.89 -60.36 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: 0.16 Total: 41.85 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.69 Total: -3.20 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -4.91 Total: -112.06 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.07 Total: -28.30 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -64.25 3.89 -60.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069416406.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.424 kcal (2) G-P(sol) polarization free energy of solvation -64.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds