Wall clock time and date at job start Tue Mar 31 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00018 * 2 1 4 4 H 1.48495 * 109.47157 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47039 * 299.99535 * 3 2 1 6 6 H 1.48498 * 109.47360 * 59.99498 * 3 2 1 7 7 C 1.37876 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99548 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00497 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47425 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.47064 * 180.02562 * 10 9 7 12 12 C 1.35970 * 116.99513 * 180.02562 * 11 10 9 13 13 C 1.38791 * 120.50310 * 0.20633 * 12 11 10 14 14 C 1.38778 * 118.45258 * 180.26765 * 13 12 11 15 15 C 1.38100 * 119.35761 * 359.47995 * 14 13 12 16 16 N 1.31953 * 120.95683 * 0.30124 * 15 14 13 17 17 C 1.32297 * 121.68585 * 359.97347 * 16 15 14 18 18 N 1.39472 * 119.72666 * 179.97438 * 17 16 15 19 19 C 1.34779 * 119.99845 * 0.02562 * 18 17 16 20 20 O 1.21507 * 120.00084 * 359.97438 * 19 18 17 21 21 C 1.48227 * 119.99919 * 180.02562 * 19 18 17 22 22 C 1.40300 * 119.24319 * 180.02562 * 21 19 18 23 23 C 1.36491 * 119.81574 * 179.97438 * 22 21 19 24 24 C 1.40763 * 118.25069 * 359.97438 * 23 22 21 25 25 C 1.40411 * 121.28883 * 180.02562 * 24 23 22 26 26 C 1.36140 * 119.65717 * 180.02562 * 25 24 23 27 27 C 1.39428 * 120.91095 * 359.91518 * 26 25 24 28 28 C 1.35993 * 121.08774 * 0.07027 * 27 26 25 29 29 C 1.40825 * 119.73146 * 359.97105 * 28 27 26 30 30 N 1.31894 * 119.24165 * 359.72883 * 21 19 18 31 31 H 0.96991 * 119.99841 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47754 * 59.99452 * 9 7 2 33 33 H 1.09001 * 109.47132 * 299.99548 * 9 7 2 34 34 H 1.08992 * 109.47089 * 59.99858 * 10 9 7 35 35 H 1.08995 * 109.46560 * 299.99630 * 10 9 7 36 36 H 1.08006 * 120.77836 * 0.04945 * 13 12 11 37 37 H 1.08002 * 120.32574 * 179.76043 * 14 13 12 38 38 H 1.07996 * 119.52225 * 180.27910 * 15 14 13 39 39 H 0.97003 * 120.00007 * 180.02562 * 18 17 16 40 40 H 1.07994 * 120.09005 * 359.97410 * 22 21 19 41 41 H 1.07997 * 120.87790 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.17061 * 359.97438 * 25 24 23 43 43 H 1.07997 * 119.54350 * 179.97438 * 26 25 24 44 44 H 1.08008 * 119.45585 * 180.02562 * 27 26 25 45 45 H 1.08000 * 120.13671 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5308 -4.8997 -0.0001 12 6 2.2714 -6.0400 0.0004 13 6 3.6580 -5.9795 0.0057 14 6 4.3718 -7.1696 0.0003 15 6 3.6878 -8.3693 0.0007 16 7 2.3686 -8.3985 0.0003 17 6 1.6489 -7.2884 0.0000 18 7 0.2564 -7.3669 -0.0010 19 6 -0.3507 -8.5703 -0.0011 20 8 0.3152 -9.5867 -0.0007 21 6 -1.8306 -8.6537 -0.0027 22 6 -2.4459 -9.9146 -0.0021 23 6 -3.8078 -10.0051 -0.0031 24 6 -4.5548 -8.8120 -0.0040 25 6 -5.9588 -8.8307 -0.0045 26 6 -6.6482 -7.6567 -0.0059 27 6 -5.9793 -6.4334 -0.0051 28 6 -4.6205 -6.3760 -0.0044 29 6 -3.8711 -7.5683 -0.0037 30 7 -2.5387 -7.5410 0.0014 31 1 -0.4849 0.8400 -0.0004 32 1 0.6247 -2.5572 -0.8896 33 1 0.6242 -2.5567 0.8903 34 1 2.8720 -3.6044 0.8904 35 1 2.8719 -3.6043 -0.8895 36 1 4.1697 -5.0283 0.0104 37 1 5.4517 -7.1578 0.0003 38 1 4.2406 -9.2971 0.0011 39 1 -0.2751 -6.5555 -0.0016 40 1 -1.8437 -10.8110 -0.0010 41 1 -4.2994 -10.9667 -0.0031 42 1 -6.4891 -9.7716 -0.0045 43 1 -7.7280 -7.6732 -0.0066 44 1 -6.5496 -5.5162 -0.0058 45 1 -4.1182 -5.4199 -0.0042 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069559022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:02 Heat of formation + Delta-G solvation = 30.455366 kcal Electronic energy + Delta-G solvation = -30428.836238 eV Core-core repulsion = 26184.103735 eV Total energy + Delta-G solvation = -4244.732503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33560 -40.70264 -39.20704 -37.78389 -37.06075 -34.94403 -33.80524 -33.44468 -31.70139 -31.10018 -30.53983 -30.23008 -29.00870 -25.73604 -25.35319 -24.12301 -23.37627 -22.74113 -22.38289 -21.25590 -20.49710 -18.85764 -18.13785 -17.95917 -17.54483 -17.11990 -16.23713 -16.09932 -15.84187 -15.32055 -15.27370 -15.09916 -14.74751 -14.65082 -14.54420 -14.37214 -14.15517 -13.91165 -13.52650 -13.42982 -13.37673 -12.82732 -12.39268 -12.00988 -11.99970 -11.94110 -11.88061 -11.80677 -11.02685 -10.99823 -10.89708 -10.72382 -10.65810 -10.58811 -10.02447 -9.89723 -9.74585 -9.37365 -9.21666 -9.08086 -9.07938 -8.58517 -8.50013 -7.64288 -6.15453 -4.20170 -0.09273 0.38964 1.21411 1.46299 1.67745 2.27519 2.78486 3.09658 3.23171 3.30303 3.33352 3.55609 3.74013 3.84790 4.05578 4.22579 4.34479 4.36202 4.49681 4.52255 4.70694 4.82918 4.85392 4.96333 5.04274 5.11157 5.15929 5.21378 5.28151 5.47109 5.48777 5.61184 5.71769 5.76137 5.88096 5.93125 6.03063 6.07399 6.11513 6.18546 6.19771 6.35967 6.50020 6.57339 6.63061 7.21112 7.37230 7.47123 7.56845 7.66664 7.87721 8.02640 8.17233 8.31456 8.85268 9.44520 10.95974 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.006923 B = 0.002799 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4043.296688 B =10000.075018 C =14022.924995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.313 6.313 12 C 0.072 3.928 13 C -0.149 4.149 14 C -0.158 4.158 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.325 3.675 18 N -0.631 5.631 19 C 0.562 3.438 20 O -0.470 6.470 21 C 0.117 3.883 22 C -0.123 4.123 23 C -0.063 4.063 24 C -0.086 4.086 25 C -0.106 4.106 26 C -0.104 4.104 27 C -0.106 4.106 28 C -0.079 4.079 29 C 0.124 3.876 30 N -0.437 5.437 31 H 0.263 0.737 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.434 0.566 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.414 -19.620 -0.014 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.226 6.226 12 C 0.020 3.980 13 C -0.175 4.175 14 C -0.179 4.179 15 C -0.082 4.082 16 N -0.160 5.160 17 C 0.093 3.907 18 N -0.279 5.279 19 C 0.346 3.654 20 O -0.339 6.339 21 C -0.037 4.037 22 C -0.144 4.144 23 C -0.089 4.089 24 C -0.089 4.089 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.098 4.098 29 C 0.001 3.999 30 N -0.149 5.149 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.274 0.726 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.152 0.848 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.432 -20.149 -0.007 21.842 hybrid contribution 0.427 1.556 -0.002 1.614 sum -8.005 -18.593 -0.009 20.243 Atomic orbital electron populations 1.69980 1.06071 1.26900 1.49630 1.24980 0.94911 0.99379 0.94855 0.86439 0.79989 0.83264 0.77749 1.19646 1.20820 1.20824 1.20982 0.93074 0.90130 1.52323 0.92314 1.19129 0.94130 0.88857 0.98977 1.23406 0.97262 0.80334 0.99817 1.86137 1.36165 1.12883 1.87383 1.19590 0.91133 0.87117 1.00114 1.21615 0.92155 1.00421 1.03322 1.21904 1.01208 0.92514 1.02256 1.22406 0.88720 0.97923 0.99191 1.67607 1.07979 1.26883 1.13490 1.17774 0.84550 0.87128 1.01286 1.43226 1.03808 1.10631 1.70274 1.18018 0.85916 0.83708 0.77733 1.90870 1.64126 1.34045 1.44831 1.21268 0.93735 0.89864 0.98792 1.21709 0.95326 0.98488 0.98846 1.21445 0.93466 0.97977 0.96018 1.18994 0.95054 0.93927 1.00882 1.20977 0.92060 0.99068 1.00343 1.21038 1.00512 0.92339 0.98344 1.20989 0.94236 0.98493 0.98862 1.21041 0.93637 0.97423 0.97661 1.18863 0.88759 0.93017 0.99282 1.67870 1.07248 1.30239 1.09498 0.92737 0.95295 0.95289 0.92919 0.92923 0.83646 0.84723 0.82527 0.72553 0.83050 0.83596 0.85045 0.85313 0.84823 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.21 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.33 4.70 37.16 0.17 1.50 16 11 O -0.31 -6.05 9.38 -19.65 -0.18 -6.24 16 12 C 0.07 1.25 6.72 -38.91 -0.26 0.99 16 13 C -0.15 -2.21 9.14 -39.18 -0.36 -2.56 16 14 C -0.16 -1.98 10.10 -39.43 -0.40 -2.38 16 15 C 0.07 1.02 11.17 -17.55 -0.20 0.82 16 16 N -0.44 -7.58 7.87 -12.24 -0.10 -7.68 16 17 C 0.33 5.69 7.44 -154.51 -1.15 4.54 16 18 N -0.63 -10.54 5.37 -12.04 -0.06 -10.61 16 19 C 0.56 9.07 7.78 -12.15 -0.09 8.97 16 20 O -0.47 -8.38 14.53 5.36 0.08 -8.30 16 21 C 0.12 1.64 6.75 -82.96 -0.56 1.08 16 22 C -0.12 -1.37 9.54 -39.44 -0.38 -1.74 16 23 C -0.06 -0.57 9.88 -39.26 -0.39 -0.96 16 24 C -0.09 -0.89 5.75 -106.71 -0.61 -1.50 16 25 C -0.11 -0.82 9.77 -39.52 -0.39 -1.20 16 26 C -0.10 -0.76 9.96 -39.89 -0.40 -1.15 16 27 C -0.11 -0.90 9.94 -39.94 -0.40 -1.29 16 28 C -0.08 -0.87 9.99 -39.41 -0.39 -1.27 16 29 C 0.12 1.56 6.61 -84.85 -0.56 1.00 16 30 N -0.44 -6.23 9.47 -7.54 -0.07 -6.30 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.05 1.01 7.71 -51.93 -0.40 0.61 16 36 H 0.15 1.99 6.44 -52.48 -0.34 1.65 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.43 7.12 7.35 -40.82 -0.30 6.82 16 40 H 0.15 1.50 7.60 -52.49 -0.40 1.10 16 41 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 391.43 15.07 5.90 5.90 Total: -1.00 -33.29 391.43 -10.82 -44.12 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.18 Total: 5.85 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -6.92 Total: -7.58 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.50 Total: -49.54 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.11 Total: -14.54 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.29 -10.82 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069559022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.572 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds