Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 120.00115 * 2 1 4 4 C 1.52999 * 109.47251 * 89.99882 * 3 2 1 5 5 N 1.46507 * 109.46855 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99854 * 179.97438 * 5 4 3 7 7 O 1.21588 * 120.00132 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00035 * 180.02562 * 6 5 4 9 9 C 1.39245 * 119.99997 * 185.19043 * 8 6 5 10 10 C 1.39481 * 119.83111 * 324.01545 * 9 8 6 11 11 C 1.36378 * 120.16864 * 180.29893 * 10 9 8 12 12 C 1.40869 * 119.82458 * 359.48611 * 11 10 9 13 13 C 1.41159 * 120.15790 * 180.25150 * 12 11 10 14 14 H 1.08004 * 119.99801 * 205.03563 * 13 12 11 15 15 C 1.39892 * 120.00151 * 25.03972 * 13 12 11 16 16 N 1.30873 * 120.00281 * 17.75049 * 15 13 12 17 17 Si 1.86808 * 119.99782 * 197.75574 * 15 13 12 18 18 H 1.48500 * 109.47012 * 94.97725 * 17 15 13 19 19 H 1.48496 * 109.47081 * 214.98118 * 17 15 13 20 20 H 1.48498 * 109.46939 * 334.97680 * 17 15 13 21 21 C 1.40867 * 119.67318 * 0.51521 * 12 11 10 22 22 C 1.36365 * 119.82975 * 359.73258 * 21 12 11 23 23 C 1.34771 * 119.99910 * 179.97438 * 2 1 3 24 24 O 1.21514 * 120.00233 * 179.97438 * 23 2 1 25 25 O 1.34641 * 120.00196 * 0.02562 * 23 2 1 26 26 C 1.45195 * 117.00394 * 179.97438 * 25 23 2 27 27 C 1.53008 * 109.47176 * 60.00032 * 26 25 23 28 28 C 1.53006 * 109.47162 * 179.97438 * 26 25 23 29 29 C 1.52994 * 109.47346 * 299.99914 * 26 25 23 30 30 H 1.08998 * 109.46822 * 89.99888 * 1 2 3 31 31 H 1.08991 * 109.47427 * 210.00593 * 1 2 3 32 32 H 1.09004 * 109.46585 * 330.00570 * 1 2 3 33 33 H 1.08998 * 109.46875 * 329.99376 * 3 2 1 34 34 H 1.09005 * 109.46759 * 209.99981 * 3 2 1 35 35 H 1.08995 * 109.46784 * 60.00343 * 4 3 2 36 36 H 1.08992 * 109.47159 * 299.99431 * 4 3 2 37 37 H 0.97001 * 119.99751 * 0.02562 * 5 4 3 38 38 H 0.96997 * 119.99991 * 5.17578 * 8 6 5 39 39 H 1.08004 * 119.91631 * 0.03225 * 10 9 8 40 40 H 1.08001 * 120.08185 * 179.70403 * 11 10 9 41 41 H 0.96996 * 120.00321 * 180.02562 * 16 15 13 42 42 H 1.07997 * 120.08257 * 179.71651 * 21 12 11 43 43 H 1.08004 * 119.91664 * 179.97438 * 22 21 12 44 44 H 1.09003 * 109.46648 * 60.00071 * 27 26 25 45 45 H 1.08993 * 109.47237 * 180.02562 * 27 26 25 46 46 H 1.08998 * 109.46594 * 300.00183 * 27 26 25 47 47 H 1.09004 * 109.46654 * 60.00392 * 28 26 25 48 48 H 1.09001 * 109.46580 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.47179 * 300.00016 * 28 26 25 50 50 H 1.09008 * 109.47108 * 59.99975 * 29 26 25 51 51 H 1.09001 * 109.47851 * 179.97438 * 29 26 25 52 52 H 1.09004 * 109.47391 * 300.00173 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1856 2.9789 1.4424 6 6 3.5222 3.5627 2.6095 7 8 3.2179 3.0365 3.6625 8 7 4.1961 4.7298 2.6095 9 6 4.6384 5.2785 3.8104 10 6 3.8597 5.1496 4.9605 11 6 4.2833 5.6895 6.1390 12 6 5.5158 6.3694 6.1953 13 6 5.9636 6.9264 7.4126 14 1 6.6529 7.7578 7.4048 15 6 5.5146 6.4014 8.6291 16 7 4.9751 5.2097 8.6682 17 14 5.6848 7.4016 10.1976 18 1 4.4212 8.1381 10.4546 19 1 5.9680 6.4918 11.3365 20 1 6.8007 8.3700 10.0485 21 6 6.2966 6.4955 5.0295 22 6 5.8574 5.9547 3.8573 23 6 2.1388 -1.1672 0.0005 24 8 3.3540 -1.1672 0.0001 25 8 1.4657 -2.3332 0.0005 26 6 2.2564 -3.5509 0.0005 27 6 3.1391 -3.5859 1.2498 28 6 1.3243 -4.7643 0.0012 29 6 3.1390 -3.5859 -1.2487 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.6085 2.0283 -0.5139 34 1 3.1500 1.1383 -0.5139 35 1 3.0416 0.9508 1.9562 36 1 1.5002 1.8409 1.9562 37 1 3.4281 3.3988 0.6023 38 1 4.3733 5.1875 1.7728 39 1 2.9169 4.6246 4.9166 40 1 3.6771 5.5930 7.0276 41 1 4.6635 4.8458 9.5116 42 1 7.2403 7.0193 5.0641 43 1 6.4547 6.0509 2.9625 44 1 2.5102 -3.5610 2.1398 45 1 3.7330 -4.4998 1.2496 46 1 3.8030 -2.7215 1.2498 47 1 0.6952 -4.7396 -0.8887 48 1 1.9180 -5.6784 0.0007 49 1 0.6958 -4.7392 0.8914 50 1 3.8031 -2.7215 -1.2487 51 1 3.7330 -4.4999 -1.2485 52 1 2.5102 -3.5610 -2.1387 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069563149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -81.304206 kcal Electronic energy + Delta-G solvation = -32052.386590 eV Core-core repulsion = 27631.332003 eV Total energy + Delta-G solvation = -4421.054587 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.12530 -39.83781 -38.22929 -37.35703 -36.05796 -34.82995 -34.30345 -33.92708 -32.85994 -29.94005 -29.37343 -28.57816 -27.74793 -27.65903 -26.95942 -25.01848 -23.76757 -21.73142 -21.39972 -21.03278 -20.03544 -19.60909 -18.24965 -17.84990 -17.25747 -17.04883 -16.83211 -16.33152 -15.66792 -15.51428 -15.15985 -14.91377 -14.67673 -14.44555 -14.08818 -13.93664 -13.81144 -13.68270 -13.61984 -12.96427 -12.84825 -12.70563 -12.63199 -12.53752 -12.31351 -12.20937 -12.18556 -12.00566 -11.80259 -11.72711 -11.61131 -11.59063 -11.36635 -11.09661 -10.87962 -10.66096 -10.45563 -10.28723 -9.95869 -9.82845 -9.46849 -9.21356 -9.14345 -8.89027 -8.61389 -7.44756 -6.93911 -6.67432 -4.22713 1.74227 2.53530 2.74272 3.05163 3.11550 3.13787 3.15420 3.22194 3.56336 3.77687 3.98257 4.38967 4.43629 4.57818 4.60159 4.63896 4.70265 4.70948 4.81616 5.06557 5.13784 5.16194 5.20989 5.24064 5.36329 5.38741 5.46099 5.55903 5.64891 5.68790 5.75229 5.77690 5.96081 6.02037 6.10533 6.16152 6.21283 6.45867 6.59946 6.87702 6.91395 6.97608 7.11900 7.17651 7.36144 7.40840 7.69169 7.91837 8.03481 8.07523 8.13047 8.33642 8.55345 8.70505 8.95252 8.99423 9.18612 10.25590 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.001616 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.821830 B =17319.830308 C =18086.294554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.597 5.597 3 C 0.123 3.877 4 C 0.125 3.875 5 N -0.751 5.751 6 C 0.695 3.305 7 O -0.573 6.573 8 N -0.666 5.666 9 C 0.010 3.990 10 C -0.085 4.085 11 C -0.157 4.157 12 C 0.105 3.895 13 C -0.461 4.461 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.789 5.789 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.216 4.216 22 C -0.106 4.106 23 C 0.652 3.348 24 O -0.560 6.560 25 O -0.361 6.361 26 C 0.135 3.865 27 C -0.185 4.185 28 C -0.140 4.140 29 C -0.183 4.183 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.392 0.608 38 H 0.390 0.610 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.280 0.720 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.070 0.930 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 -14.566 -20.698 27.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.338 5.338 3 C 0.000 4.000 4 C -0.001 4.001 5 N -0.409 5.409 6 C 0.396 3.604 7 O -0.449 6.449 8 N -0.313 5.313 9 C -0.082 4.082 10 C -0.105 4.105 11 C -0.177 4.177 12 C 0.102 3.898 13 C -0.491 4.491 14 H 0.096 0.904 15 C -0.144 4.144 16 N -0.414 5.414 17 Si 0.732 3.268 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.236 4.236 22 C -0.126 4.126 23 C 0.407 3.593 24 O -0.449 6.449 25 O -0.276 6.276 26 C 0.098 3.902 27 C -0.242 4.242 28 C -0.197 4.197 29 C -0.240 4.240 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.225 0.775 38 H 0.223 0.777 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.080 0.920 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.089 0.911 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.116 -15.374 -19.547 26.847 hybrid contribution 0.309 0.643 -0.049 0.715 sum -9.807 -14.731 -19.596 26.404 Atomic orbital electron populations 1.21831 0.78075 1.03955 1.02199 1.46465 1.07406 1.03152 1.76735 1.21580 0.98407 0.83115 0.96898 1.21414 0.96959 0.85449 0.96258 1.44879 1.63434 1.25156 1.07420 1.15979 0.79790 0.80930 0.83742 1.90942 1.59007 1.65267 1.29716 1.42041 1.58849 1.21379 1.08983 1.16988 0.96989 1.09030 0.85228 1.20575 0.98717 0.98923 0.92334 1.20992 0.97112 1.03177 0.96410 1.17670 0.90367 0.89631 0.92135 1.19540 1.24404 1.15042 0.90087 0.90426 1.25931 0.93092 0.94191 1.01164 1.69872 1.29549 1.13463 1.28525 0.86312 0.79651 0.80387 0.80416 1.19384 1.20354 1.18607 1.20520 1.00232 1.09359 0.93464 1.20037 0.93625 1.01705 0.97263 1.18009 0.83989 0.81249 0.76099 1.90934 1.12164 1.86714 1.55075 1.86291 1.41010 1.13745 1.86554 1.22105 0.90896 0.80495 0.96658 1.22528 1.00710 1.04651 0.96338 1.21858 0.99570 0.94952 1.03327 1.22511 1.00603 1.04609 0.96267 0.92308 0.90260 0.90487 0.89143 0.88740 0.91239 0.91569 0.77492 0.77692 0.87499 0.86367 0.90857 0.88699 0.89302 0.92008 0.91073 0.89276 0.91551 0.90099 0.91399 0.89377 0.91088 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 10.44 59.85 0.63 1.13 16 2 N -0.60 -5.47 2.87 -187.41 -0.54 -6.01 16 3 C 0.12 1.04 5.52 -4.04 -0.02 1.02 16 4 C 0.13 1.52 6.00 -4.04 -0.02 1.49 16 5 N -0.75 -9.64 5.56 -65.23 -0.36 -10.01 16 6 C 0.70 12.94 8.40 -86.93 -0.73 12.21 16 7 O -0.57 -13.60 13.78 5.29 0.07 -13.53 16 8 N -0.67 -12.07 5.31 -14.10 -0.07 -12.15 16 9 C 0.01 0.23 6.30 -83.57 -0.53 -0.29 16 10 C -0.09 -2.20 8.61 -39.79 -0.34 -2.54 16 11 C -0.16 -4.32 8.63 -39.26 -0.34 -4.66 16 12 C 0.10 2.87 5.57 -106.80 -0.59 2.28 16 13 C -0.46 -12.49 9.03 -37.85 -0.34 -12.83 16 14 H 0.08 2.00 7.91 -52.48 -0.41 1.59 16 15 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 16 N -0.79 -21.34 10.98 55.54 0.61 -20.73 16 17 Si 0.91 19.10 29.60 -169.99 -5.03 14.07 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 C -0.22 -5.35 9.74 -39.26 -0.38 -5.73 16 22 C -0.11 -2.38 9.90 -39.79 -0.39 -2.77 16 23 C 0.65 7.49 7.70 54.05 0.42 7.90 16 24 O -0.56 -7.78 11.46 -19.28 -0.22 -8.00 16 25 O -0.36 -3.69 8.71 -40.33 -0.35 -4.04 16 26 C 0.14 1.18 1.13 -90.62 -0.10 1.08 16 27 C -0.19 -1.76 8.37 37.16 0.31 -1.45 16 28 C -0.14 -0.84 8.85 37.16 0.33 -0.51 16 29 C -0.18 -1.52 8.37 37.15 0.31 -1.21 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.51 7.37 -51.93 -0.38 0.12 16 32 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.09 0.87 7.42 -51.93 -0.39 0.48 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.39 3.51 8.49 -40.82 -0.35 3.17 16 38 H 0.39 5.35 8.84 -40.82 -0.36 4.99 16 39 H 0.11 2.79 6.24 -52.48 -0.33 2.46 16 40 H 0.12 3.37 6.19 -52.49 -0.32 3.04 16 41 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 42 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.95 5.88 -51.92 -0.31 0.64 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 423.49 15.07 6.38 6.38 Total: -1.00 -34.89 423.49 -9.61 -44.50 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -8.20 Total: 12.56 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.90 Total: -3.04 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.37 Total: -48.90 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.50 Total: -25.57 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -34.89 -9.61 -44.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069563149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.804 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds